Clone Name | rbart32a11 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | Y1555_STAHJ (Q4L661) UPF0078 membrane protein SH1555 | 29 | 6.7 | 2 | T2_MOUSE (Q06666) Octapeptide-repeat protein T2 | 29 | 6.7 | 3 | MELPH_MOUSE (Q91V27) Melanophilin (Exophilin-3) (Leaden protein)... | 28 | 8.7 |
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>Y1555_STAHJ (Q4L661) UPF0078 membrane protein SH1555| Length = 202 Score = 28.9 bits (63), Expect = 6.7 Identities = 14/25 (56%), Positives = 19/25 (76%) Frame = -1 Query: 397 LCLARVYIFVLHIFKYVSLSCSLSA 323 L LA ++ VL+IFKYVSLS ++A Sbjct: 130 LILAIIFFGVLYIFKYVSLSSIIAA 154
>T2_MOUSE (Q06666) Octapeptide-repeat protein T2| Length = 185 Score = 28.9 bits (63), Expect = 6.7 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 5/65 (7%) Frame = +3 Query: 51 RVVDRERENKRGEEADRRR-----NGAIYPAPS*RGKHAHGGDDREINSSGSQRARISFG 215 R +R+RE +RG EA+R+R A A RG+ G G +R R Sbjct: 23 REAERQRERQRGREAERQRGRERGREAEREAERQRGRERQRGRGEAERQRGRERGREVER 82 Query: 216 PREGR 230 R GR Sbjct: 83 HRRGR 87
>MELPH_MOUSE (Q91V27) Melanophilin (Exophilin-3) (Leaden protein)| (Synaptotagmin-like protein 2a) (Slac2-a) (Slp homolog lacking C2 domains a) Length = 590 Score = 28.5 bits (62), Expect = 8.7 Identities = 14/29 (48%), Positives = 20/29 (68%) Frame = +1 Query: 85 GKRQTGGGTEPSIQLRASEGNTHTEETIE 171 G+ Q GGG+EPS++ EGN +E+T E Sbjct: 143 GRLQGGGGSEPSLE----EGNGDSEQTDE 167 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,388,411 Number of Sequences: 219361 Number of extensions: 1099648 Number of successful extensions: 2946 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 2837 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2941 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)