ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart32a11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y1555_STAHJ (Q4L661) UPF0078 membrane protein SH1555 29 6.7
2T2_MOUSE (Q06666) Octapeptide-repeat protein T2 29 6.7
3MELPH_MOUSE (Q91V27) Melanophilin (Exophilin-3) (Leaden protein)... 28 8.7

>Y1555_STAHJ (Q4L661) UPF0078 membrane protein SH1555|
          Length = 202

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 14/25 (56%), Positives = 19/25 (76%)
 Frame = -1

Query: 397 LCLARVYIFVLHIFKYVSLSCSLSA 323
           L LA ++  VL+IFKYVSLS  ++A
Sbjct: 130 LILAIIFFGVLYIFKYVSLSSIIAA 154



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>T2_MOUSE (Q06666) Octapeptide-repeat protein T2|
          Length = 185

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
 Frame = +3

Query: 51  RVVDRERENKRGEEADRRR-----NGAIYPAPS*RGKHAHGGDDREINSSGSQRARISFG 215
           R  +R+RE +RG EA+R+R       A   A   RG+    G        G +R R    
Sbjct: 23  REAERQRERQRGREAERQRGRERGREAEREAERQRGRERQRGRGEAERQRGRERGREVER 82

Query: 216 PREGR 230
            R GR
Sbjct: 83  HRRGR 87



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>MELPH_MOUSE (Q91V27) Melanophilin (Exophilin-3) (Leaden protein)|
           (Synaptotagmin-like protein 2a) (Slac2-a) (Slp homolog
           lacking C2 domains a)
          Length = 590

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +1

Query: 85  GKRQTGGGTEPSIQLRASEGNTHTEETIE 171
           G+ Q GGG+EPS++    EGN  +E+T E
Sbjct: 143 GRLQGGGGSEPSLE----EGNGDSEQTDE 167


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,388,411
Number of Sequences: 219361
Number of extensions: 1099648
Number of successful extensions: 2946
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2941
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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