ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart32a07 |
|---|---|
| Clone Library Name | barley_pub |
>GI1L3_ARATH (Q940G6) Probable gibberellin receptor GID1L3 (EC 3.-.-.-)| (GID1-like protein 3) Length = 344 Score = 100 bits (249), Expect = 2e-21 Identities = 54/123 (43%), Positives = 71/123 (57%) Frame = -1 Query: 509 FGGEERTEAEQRLEGVAPVVNMRRSDWAWRAFLPEGADRNHPAAHVTGEAGPEPELAESF 330 FGG ERTE+E+RL+G V +R DW WRAFLPEG DR HPA G E SF Sbjct: 219 FGGTERTESEKRLDGKY-FVTVRDRDWYWRAFLPEGEDREHPACSPFGPRSKSLE-GLSF 276 Query: 329 PPAMVAVGGLDPLQDWQRRYGAMLRRKGKAVNVLEFPDAIHAFYCFPELPDSGRLVEEMR 150 P ++V V GLD +QDWQ +Y L++ G+ V +L A FY P +++E+ Sbjct: 277 PKSLVVVAGLDLIQDWQLKYAEGLKKAGQEVKLLYLEQATIGFYLLPNNNHFHTVMDEIA 336 Query: 149 AFI 141 AF+ Sbjct: 337 AFV 339
>GI1L1_ARATH (Q9MAA7) Probable gibberellin receptor GID1L1 (EC 3.-.-.-)| (GID1-like protein 1) Length = 345 Score = 95.9 bits (237), Expect = 6e-20 Identities = 50/123 (40%), Positives = 70/123 (56%) Frame = -1 Query: 509 FGGEERTEAEQRLEGVAPVVNMRRSDWAWRAFLPEGADRNHPAAHVTGEAGPEPELAESF 330 FGG ERTE+E+ L+G V +R DW W+AFLPEG DR HPA + G E SF Sbjct: 221 FGGNERTESEKSLDGKY-FVTVRDRDWYWKAFLPEGEDREHPACNPFSPRGKSLE-GVSF 278 Query: 329 PPAMVAVGGLDPLQDWQRRYGAMLRRKGKAVNVLEFPDAIHAFYCFPELPDSGRLVEEMR 150 P ++V V GLD ++DWQ Y L++ G+ V ++ A FY P +++E+ Sbjct: 279 PKSLVVVAGLDLIRDWQLAYAEGLKKAGQEVKLMHLEKATVGFYLLPNNNHFHNVMDEIS 338 Query: 149 AFI 141 AF+ Sbjct: 339 AFV 341
>GI1L2_ARATH (Q9LYC1) Probable gibberellin receptor GID1L2 (EC 3.-.-.-)| (GID1-like protein 2) Length = 358 Score = 95.1 bits (235), Expect = 1e-19 Identities = 51/123 (41%), Positives = 72/123 (58%) Frame = -1 Query: 509 FGGEERTEAEQRLEGVAPVVNMRRSDWAWRAFLPEGADRNHPAAHVTGEAGPEPELAESF 330 FGG+ERT++E+ L+G V ++ DW WRA+LPEG DR+HPA + G G + +F Sbjct: 221 FGGQERTQSEKTLDGKY-FVTIQDRDWYWRAYLPEGEDRDHPACNPFGPRGQSLK-GVNF 278 Query: 329 PPAMVAVGGLDPLQDWQRRYGAMLRRKGKAVNVLEFPDAIHAFYCFPELPDSGRLVEEMR 150 P ++V V GLD +QDWQ Y L++ G VN+L A FY P L+EE+ Sbjct: 279 PKSLVVVAGLDLVQDWQLAYVDGLKKTGLEVNLLYLKQATIGFYFLPNNDHFHCLMEELN 338 Query: 149 AFI 141 F+ Sbjct: 339 KFV 341
>GID1_ORYSA (Q6L545) Gibberellin receptor GID1 (EC 3.-.-.-)| (Gibberellin-insensitive dwarf protein 1) (Protein GIBBERELLIN INSENSITIVE DWARF1) Length = 354 Score = 82.4 bits (202), Expect = 6e-16 Identities = 48/126 (38%), Positives = 67/126 (53%) Frame = -1 Query: 509 FGGEERTEAEQRLEGVAPVVNMRRSDWAWRAFLPEGADRNHPAAHVTGEAGPEPELAESF 330 FGG ERTE+E+RL+G V ++ DW W+A+LPE ADR+HPA + G G F Sbjct: 228 FGGTERTESERRLDGKY-FVTLQDRDWYWKAYLPEDADRDHPACNPFGPNGRRLG-GLPF 285 Query: 329 PPAMVAVGGLDPLQDWQRRYGAMLRRKGKAVNVLEFPDAIHAFYCFPELPDSGRLVEEMR 150 +++ V GLD D Q Y LR G V V++ +A FY P ++EE+ Sbjct: 286 AKSLIIVSGLDLTCDRQLAYADALREDGHHVKVVQCENATVGFYLLPNTVHYHEVMEEIS 345 Query: 149 AFIGTN 132 F+ N Sbjct: 346 DFLNAN 351
>BAH_STRHY (Q01109) Acetyl-hydrolase (EC 3.1.1.-)| Length = 299 Score = 38.9 bits (89), Expect = 0.008 Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 1/91 (1%) Frame = -1 Query: 404 GADRNHPAAHVTGEAGPEPELAESFPPAMVAVGGLDPLQDWQRRYGAMLRRKGKAVNVLE 225 G D HP A P PP ++ VG + L D R + G V E Sbjct: 208 GTDPRHPLA------SPAHGDLTGLPPLLIQVGSEEVLHDDARALEQAALKAGTPVTFEE 261 Query: 224 FPDAIHAFYCF-PELPDSGRLVEEMRAFIGT 135 +P+ H ++ + P LP+ R +E AF+ T Sbjct: 262 WPEMFHVWHWYHPVLPEGRRAIEVAGAFLRT 292
>TRAD1_ECOLI (P09130) Protein traD| Length = 717 Score = 32.3 bits (72), Expect = 0.77 Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 10/101 (9%) Frame = -1 Query: 503 GEERTEAEQRLEGVAPVVNMRRSDWAWRAFLPEGADRNHPAAHVTGE--AGPEPELAESF 330 GE+ T+AEQ + V+P +N ++SD + N PA + E PE E+ + Sbjct: 613 GEDVTQAEQPQQPVSPAINDKKSD----------SGVNVPAGGIEQELKMKPEEEMEQQL 662 Query: 329 PPAMVAVG---GLDPLQDWQRR-----YGAMLRRKGKAVNV 231 PP + G + + WQ+ M RR+ +NV Sbjct: 663 PPGISESGEVVDMAAYEAWQQENHPDIQQQMQRREEVNINV 703
>RPOB_STAPU (Q32RW5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1068 Score = 31.2 bits (69), Expect = 1.7 Identities = 16/44 (36%), Positives = 25/44 (56%) Frame = +3 Query: 117 VMSGRVGPDERPHLLHEPAGVGELREAVEGVDGVRELQHIDRLP 248 V+ G++ P E PHLL P G+L +A+ GV + + +LP Sbjct: 737 VLVGKLAPLEAPHLLRSPE--GKLLQAIFGVQAITTRESCLKLP 778
>BCHY_RHOCA (P26178) Chlorophyllide reductase 52.5 kDa chain (EC 1.18.1.-)| (Chlorin reductase) Length = 497 Score = 30.4 bits (67), Expect = 2.9 Identities = 30/106 (28%), Positives = 41/106 (38%), Gaps = 2/106 (1%) Frame = -1 Query: 509 FGGEERTEAEQRLEGVAPVVNMRRSDWAWRAFLPEGADRNHPAAHVTGEAGPEPELA--E 336 FG EA+ L G A + R+ A P + P + GE P + Sbjct: 162 FGVPTHAEAKDVLSG-AMLAYARQEVMAGPVPAPISGRSDRPTVTLLGEMFPADPMVIGA 220 Query: 335 SFPPAMVAVGGLDPLQDWQRRYGAMLRRKGKAVNVLEFPDAIHAFY 198 P +AVG P++DW+ Y A+ K V AIH FY Sbjct: 221 MLAPMGLAVGPTVPMRDWRELYAAL---DSKVV------AAIHPFY 257
>SHBG_HUMAN (P04278) Sex hormone-binding globulin precursor (SHBG) (Sex| steroid-binding protein) (SBP) (Testis-specific androgen-binding protein) (ABP) (Testosterone-estrogen-binding globulin) (Testosterone-estradiol-binding globulin) (TeBG) Length = 402 Score = 30.4 bits (67), Expect = 2.9 Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 18/71 (25%) Frame = -1 Query: 440 RSDWAWRAFLPEGADRNHPAAHVTGEAGPEPELAESF------------------PPAMV 315 R WA R LP + + PA H++ G EP +F P ++ Sbjct: 25 RQGWALRPVLPTQSAHDPPAVHLSNGPGQEPIAVMTFDLTKITKTSSSFEVRTWDPEGVI 84 Query: 314 AVGGLDPLQDW 282 G +P DW Sbjct: 85 FYGDTNPKDDW 95
>PRP28_YEAST (P23394) Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 (EC| 3.6.1.-) (Helicase CA8) Length = 588 Score = 30.0 bits (66), Expect = 3.8 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 9/79 (11%) Frame = -1 Query: 488 EAEQRLEGVAPVVNMRRSDWAWRAFLPE-GADRNHPAAHVTGEAGPEPE------LAESF 330 E+E L G P+V+ R D W+ P+ A+ ++ H T ++ E L E + Sbjct: 99 ESEDTLSGYDPIVSTRAIDLLWKGKTPKNAAESSYMGKHWTEKSLHEMNERDWRILKEDY 158 Query: 329 PPAMVAVGGL--DPLQDWQ 279 A+V GG +PL++W+ Sbjct: 159 --AIVTKGGTVENPLRNWE 175
>LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor| Length = 3695 Score = 29.6 bits (65), Expect = 5.0 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Frame = +3 Query: 81 LARITQIFSSIGVMSGRVGPDERPHLLHEPAGVGELREAV-EGVDGVRELQHID 239 LAR+ + SS+ + + R L AG+ +LREA+ VD RE Q ++ Sbjct: 2349 LARVQEQLSSLWEENQALATQTRDRLAQHEAGLMDLREALNRAVDATREAQELN 2402
>CBLB_XENTR (Q6DFR2) E3 ubiquitin-protein ligase CBL-B (EC 6.3.2.-) (Signal| transduction protein CBL-B) (SH3-binding protein CBL-B) Length = 982 Score = 29.3 bits (64), Expect = 6.5 Identities = 12/19 (63%), Positives = 14/19 (73%), Gaps = 3/19 (15%) Frame = +3 Query: 417 RPPRPVG---APHVHHRRH 464 RPP+PV AP +HHRRH Sbjct: 904 RPPKPVPRRTAPEIHHRRH 922
>Y1014_TREPA (O83978) Hypothetical protein TP1014| Length = 644 Score = 28.9 bits (63), Expect = 8.5 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = -1 Query: 341 AESFPPAMVAVGGLDPLQDWQRRYGAMLRRKGKAV 237 AE P A A G ++W +R G +L+++GK V Sbjct: 598 AEEHPRARPAAGKAQRWREWYQRAGQLLQQQGKTV 632
>LRCH4_HUMAN (O75427) Leucine-rich repeats and calponin homology| domain-containing protein 4 (Leucine-rich neuronal protein) Length = 683 Score = 28.9 bits (63), Expect = 8.5 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 1/109 (0%) Frame = -1 Query: 410 PEGADRNHPAAHVTGEAGPEPELAESFPPAMVAVGGLD-PLQDWQRRYGAMLRRKGKAVN 234 P+ + AA G P P E P A A PL QR + R ++ + Sbjct: 458 PKSSASQAGAAAGQGAPAPAPASQEPLPIAGPATAPAPRPLGSIQRPNSFLFRSSSQSGS 517 Query: 233 VLEFPDAIHAFYCFPELPDSGRLVEEMRAFIGTNAPTHHPDA*EDLRDA 87 PD++ +P++PD L+ ++R + + P EDL +A Sbjct: 518 GPSSPDSVLRPRRYPQVPDEKDLMTQLRQVLESRLQRPLP---EDLAEA 563
>AVR2A_RAT (P38444) Activin receptor type 2A precursor (EC 2.7.11.30) (Activin| receptor type IIA) (ACTR-IIA) Length = 513 Score = 28.9 bits (63), Expect = 8.5 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = -2 Query: 307 AGWTRCRTGSGGTAPCCGGRGRRSMCW 227 A W R RT G PC G + +R C+ Sbjct: 35 ANWERDRTNQTGVEPCYGDKDKRRHCF 61
>AVR2A_MOUSE (P27038) Activin receptor type 2A precursor (EC 2.7.11.30) (Activin| receptor type IIA) (ACTR-IIA) Length = 513 Score = 28.9 bits (63), Expect = 8.5 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = -2 Query: 307 AGWTRCRTGSGGTAPCCGGRGRRSMCW 227 A W R RT G PC G + +R C+ Sbjct: 35 ANWERDRTNQTGVEPCYGDKDKRRHCF 61
>LIPS_SPETR (Q9R101) Hormone-sensitive lipase (EC 3.1.1.79) (HSL)| Length = 763 Score = 28.9 bits (63), Expect = 8.5 Identities = 16/64 (25%), Positives = 25/64 (39%) Frame = -1 Query: 344 LAESFPPAMVAVGGLDPLQDWQRRYGAMLRRKGKAVNVLEFPDAIHAFYCFPELPDSGRL 165 + ++ PP + LDP+ D + LR G+ V + D H F L R Sbjct: 677 MLKTLPPVHIVACALDPMLDDSXMFARRLRALGQPVTLRVVEDLPHGFLSLASLCRETRQ 736 Query: 164 VEEM 153 E+ Sbjct: 737 AAEL 740 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,987,094 Number of Sequences: 219361 Number of extensions: 1019557 Number of successful extensions: 3704 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 3539 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3694 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3754426130 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
