ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart32a06 |
|---|---|
| Clone Library Name | barley_pub |
>SYS_TROWT (Q83FJ7) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)| (SerRS) Length = 417 Score = 34.3 bits (77), Expect = 0.21 Identities = 18/51 (35%), Positives = 27/51 (52%) Frame = +3 Query: 18 RHFLIAGWQFQMRLGHMNMPLDITIVDNLQKKTKLFYSPTLRYPEIITTTG 170 R + + GW ++ L MN+ LD+ + L L +PTL PEI+ TG Sbjct: 159 RFYFLKGWGARLELAVMNLALDLALKSGL----TLLITPTLVKPEIMLGTG 205
>SYS_TROW8 (Q83HA1) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)| (SerRS) Length = 417 Score = 34.3 bits (77), Expect = 0.21 Identities = 18/51 (35%), Positives = 27/51 (52%) Frame = +3 Query: 18 RHFLIAGWQFQMRLGHMNMPLDITIVDNLQKKTKLFYSPTLRYPEIITTTG 170 R + + GW ++ L MN+ LD+ + L L +PTL PEI+ TG Sbjct: 159 RFYFLKGWGARLELAVMNLALDLALKSGL----TLLITPTLVKPEIMLGTG 205
>SWI1_YEAST (P09547) Transcription regulatory protein SWI1 (SWI/SNF complex| component SWI1) (Transcription regulatory protein ADR6) (Regulatory protein GAM3) Length = 1314 Score = 33.1 bits (74), Expect = 0.48 Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 2/83 (2%) Frame = -3 Query: 505 TSNGNSNGWNSPQDGSAKNHXXXXXXXXXXXXXXXEPAKTSQGSDSWAGWDDAK--DDGF 332 T+N N+N N+P + + N+ + G D + + D K D Sbjct: 27 TNNNNTNNNNNPANNTNNNNSTGHSSNTNNNTNNNNTNTGASGVDDFQNFFDPKPFDQNL 86 Query: 331 DSYSHHSPANKSGSNQNGTAGGS 263 DS +++S +N + +N + T S Sbjct: 87 DSNNNNSNSNNNDNNNSNTVASS 109
>ABCA2_HUMAN (Q9BZC7) ATP-binding cassette sub-family A member 2 (ATP-binding| cassette transporter 2) (ATP-binding cassette 2) Length = 2436 Score = 32.7 bits (73), Expect = 0.62 Identities = 26/87 (29%), Positives = 31/87 (35%) Frame = +1 Query: 262 MTRRRFHSDCSRSCWQGCDGCNYQNRHLSHRPSRPTSRCPDLSWQALPSCLGHPNHPKNW 441 + R F S C S QG N+ S PS + PD QA L P+ W Sbjct: 1567 LAARFFDSMCLESFTQGLPLSNFVPPPPSPAPS-DSPASPDEDLQAWNVSLPPTAGPEMW 1625 Query: 442 NCGSSLIRLAENSSRCCCHCWSPAHTC 522 SL RL RC C +C Sbjct: 1626 TSAPSLPRLVREPVRCTCSAQGTGFSC 1652
>ABCA2_RAT (Q9ESR9) ATP-binding cassette sub-family A member 2 (ATP-binding| cassette transporter 2) (ATP-binding cassette 2) Length = 2434 Score = 32.3 bits (72), Expect = 0.81 Identities = 29/91 (31%), Positives = 35/91 (38%), Gaps = 4/91 (4%) Frame = +1 Query: 262 MTRRRFHSDCSRSCWQGCDGCNYQNRHLSHRPS-RPTSRCPD--LSWQ-ALPSCLGHPNH 429 + R F S C S QG N+ S PS P S D L+W +LP G Sbjct: 1566 LAARFFDSMCLESFTQGLPLSNFVPPPPSPAPSDSPLSPDEDSLLAWNTSLPPTAG---- 1621 Query: 430 PKNWNCGSSLIRLAENSSRCCCHCWSPAHTC 522 P+ W SL RL RC C +C Sbjct: 1622 PETWTWAPSLPRLVHEPVRCTCSAQGTGFSC 1652
>ABCA2_MOUSE (P41234) ATP-binding cassette sub-family A member 2 (ATP-binding| cassette transporter 2) (ATP-binding cassette 2) Length = 2434 Score = 32.3 bits (72), Expect = 0.81 Identities = 25/87 (28%), Positives = 30/87 (34%) Frame = +1 Query: 262 MTRRRFHSDCSRSCWQGCDGCNYQNRHLSHRPSRPTSRCPDLSWQALPSCLGHPNHPKNW 441 + R F S C S QG N+ S PS + S QA L P+ W Sbjct: 1566 LAARFFDSMCLESFTQGLPLSNFVPPPPSPAPSDSPVSPDEDSLQAWNMSLPPTAGPETW 1625 Query: 442 NCGSSLIRLAENSSRCCCHCWSPAHTC 522 SL RL RC C +C Sbjct: 1626 TSAPSLPRLVHEPVRCTCSAQGTGFSC 1652
>COAT_EPMV (P20123) Coat protein (Virion protein)| Length = 188 Score = 30.8 bits (68), Expect = 2.4 Identities = 20/66 (30%), Positives = 33/66 (50%) Frame = -1 Query: 396 LPRQVRAATRGPAGTMRKMTVLIVTAITALPTRAGAIRMEPPAGHIGPTAASADACLFVR 217 LP Q +A T G T ++++ AIT L + +R+ A I PTAA+ L V Sbjct: 34 LPFQFQATTFGATETAAQISLASANAITKLASLYRHVRLTQCAATITPTAAAIANPLTVN 93 Query: 216 AIYFAE 199 ++ ++ Sbjct: 94 IVWVSD 99
>ATKA_DEIRA (Q9RZN7) Potassium-transporting ATPase A chain (EC 3.6.3.12)| (Potassium-translocating ATPase A chain) (ATP phosphohydrolase [potassium-transporting] A chain) (Potassium-binding and translocating subunit A) Length = 568 Score = 30.8 bits (68), Expect = 2.4 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 2/90 (2%) Frame = -1 Query: 522 AGMSRRPAMATATAGILRKTDQRRTTIPILGMIGMTKTRRKSLPRQVRAATRGPA--GTM 349 AG+S T G+ + T +P+L + GM +R+ +P A G + Sbjct: 475 AGLSANTFFYNLTIGLSMLMGRYLTLLPMLAVAGMLAAKRR-VPAGSGTLPTDTALFGAL 533 Query: 348 RKMTVLIVTAITALPTRAGAIRMEPPAGHI 259 +LIV A+T LP A+ + P A H+ Sbjct: 534 TVFVILIVGALTFLP----ALTLGPVADHL 559
>HBP1A_WHEAT (P23922) Transcription factor HBP-1a (Histone-specific| transcription factor HBP1) Length = 349 Score = 30.4 bits (67), Expect = 3.1 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 2/82 (2%) Frame = -3 Query: 502 SNGNSN--GWNSPQDGSAKNHXXXXXXXXXXXXXXXEPAKTSQGSDSWAGWDDAKDDGFD 329 +NGN G G+A+ + + + GSDS + DA D Sbjct: 107 TNGNLEPAGAQGAAPGAAETNGKNEPGKTSGPSANGVTSNSESGSDSESEGSDANSQN-D 165 Query: 328 SYSHHSPANKSGSNQNGTAGGS 263 S+S + N++GS QNG + S Sbjct: 166 SHSKENDVNENGSAQNGVSHSS 187
>RTOA_DICDI (P54681) Protein rtoA (Ratio-A)| Length = 400 Score = 30.0 bits (66), Expect = 4.0 Identities = 17/78 (21%), Positives = 34/78 (43%) Frame = -3 Query: 508 ETSNGNSNGWNSPQDGSAKNHXXXXXXXXXXXXXXXEPAKTSQGSDSWAGWDDAKDDGFD 329 E+S+G+SN + GS+ N ++ GS+S +G ++ + Sbjct: 208 ESSSGSSNSGSESSSGSS-NSGSESSSGSSNSGSESSSGSSNSGSESSSGSSNSGSESSS 266 Query: 328 SYSHHSPANKSGSNQNGT 275 S+ + SGS+ +G+ Sbjct: 267 GSSNSGSESSSGSSNSGS 284 Score = 30.0 bits (66), Expect = 4.0 Identities = 16/86 (18%), Positives = 35/86 (40%) Frame = -3 Query: 502 SNGNSNGWNSPQDGSAKNHXXXXXXXXXXXXXXXEPAKTSQGSDSWAGWDDAKDDGFDSY 323 S G++ NS + S ++ ++ GS+S +G ++ + Sbjct: 176 SQGSTGSSNSGSESSGSSNSGSESSGSSNSGSESSSGSSNSGSESSSGSSNSGSESSSGS 235 Query: 322 SHHSPANKSGSNQNGTAGGSYWADGG 245 S+ + SGS+ +G+ S ++ G Sbjct: 236 SNSGSESSSGSSNSGSESSSGSSNSG 261 Score = 29.6 bits (65), Expect = 5.3 Identities = 18/86 (20%), Positives = 36/86 (41%) Frame = -3 Query: 502 SNGNSNGWNSPQDGSAKNHXXXXXXXXXXXXXXXEPAKTSQGSDSWAGWDDAKDDGFDSY 323 S+G+SN + GS+ N ++ GS+S +G ++ + Sbjct: 199 SSGSSNSGSESSSGSS-NSGSESSSGSSNSGSESSSGSSNSGSESSSGSSNSGSESSSGS 257 Query: 322 SHHSPANKSGSNQNGTAGGSYWADGG 245 S+ + SGS+ +G+ S ++ G Sbjct: 258 SNSGSESSSGSSNSGSESSSGSSNSG 283
>SSPO_BOVIN (P98167) SCO-spondin (Fragment)| Length = 867 Score = 30.0 bits (66), Expect = 4.0 Identities = 32/110 (29%), Positives = 39/110 (35%), Gaps = 17/110 (15%) Frame = +1 Query: 232 SISGSRRRPNMTR--------RRFHSDCSRSCWQGCDGCNYQNRHLSHR--------PSR 363 S+ S R PN R R H R + C+GC R HR P R Sbjct: 208 SVQWSFRSPNNPRPAGRGHQCRGLHRKARRCQTEPCEGCEQDGR--VHRVGERWRAGPCR 265 Query: 364 PTSRCPDLSWQALPSC-LGHPNHPKNWNCGSSLIRLAENSSRCCCHCWSP 510 D S + P C LG + P++W L E CCHC P Sbjct: 266 VCQCLHDGSARCSPYCPLG--SCPQDWV-------LVEGVGESCCHCVPP 306
>LDLR_CRIGR (P35950) Low-density lipoprotein receptor precursor (LDL receptor)| Length = 854 Score = 29.6 bits (65), Expect = 5.3 Identities = 13/38 (34%), Positives = 20/38 (52%) Frame = +1 Query: 376 CPDLSWQALPSCLGHPNHPKNWNCGSSLIRLAENSSRC 489 CPD S ++ +C+ K ++CG + R NS RC Sbjct: 52 CPDGSDESSETCMSVTCQSKEFSCGGRVSRCIPNSWRC 89
>C71BY_ARATH (Q9LIP3) Cytochrome P450 71B37 (EC 1.14.-.-)| Length = 500 Score = 29.6 bits (65), Expect = 5.3 Identities = 15/34 (44%), Positives = 20/34 (58%) Frame = +3 Query: 180 LFWHITILQSIWLSQRDKHQRKPPSAQYDPPAVP 281 LF +L ++ L +R +HQRKPPS PP P Sbjct: 10 LFLSCLLLAALRLKKRRQHQRKPPS----PPGFP 39
>IF4B_YEAST (P34167) Eukaryotic translation initiation factor 4B (eIF-4B)| Length = 436 Score = 29.3 bits (64), Expect = 6.9 Identities = 18/63 (28%), Positives = 26/63 (41%) Frame = +1 Query: 211 YGSHKETSISGSRRRPNMTRRRFHSDCSRSCWQGCDGCNYQNRHLSHRPSRPTSRCPDLS 390 + + + ++ GS R P R D W G N+Q+ S RP R PD+ Sbjct: 262 WSAARGSNFQGSSRPPRREREEPDID-----WSAARGSNFQS---SSRPPRREREEPDID 313 Query: 391 WQA 399 W A Sbjct: 314 WSA 316
>BES1_CAEEL (Q21973) Bestrophin-1| Length = 525 Score = 28.9 bits (63), Expect = 9.0 Identities = 17/49 (34%), Positives = 25/49 (51%) Frame = +3 Query: 138 LRYPEIITTTGRSHLFWHITILQSIWLSQRDKHQRKPPSAQYDPPAVPF 284 L YP+++ RS+ F + QS+ L ++ Q PS Y P VPF Sbjct: 237 LAYPQVVFLAVRSYFFMALIARQSVLLDGKEPEQ---PSILY--PTVPF 280
>APOM_HUMAN (O95445) Apolipoprotein M (Apo-M) (ApoM) (Protein G3a)| Length = 188 Score = 28.9 bits (63), Expect = 9.0 Identities = 17/54 (31%), Positives = 24/54 (44%) Frame = +1 Query: 253 RPNMTRRRFHSDCSRSCWQGCDGCNYQNRHLSHRPSRPTSRCPDLSWQALPSCL 414 RP+M F S C G YQ L +R P +C + +++L SCL Sbjct: 116 RPDMKTELFSSSCPGGIMLNETGQGYQRFLLYNRSPHPPEKCVE-EFKSLTSCL 168
>APOM_MOUSE (Q9Z1R3) Apolipoprotein M (Apo-M) (ApoM)| Length = 190 Score = 28.9 bits (63), Expect = 9.0 Identities = 18/54 (33%), Positives = 24/54 (44%) Frame = +1 Query: 253 RPNMTRRRFHSDCSRSCWQGCDGCNYQNRHLSHRPSRPTSRCPDLSWQALPSCL 414 RP+M F S C G YQ L +R P +C + +Q+L SCL Sbjct: 118 RPDMKTDLFSSSCPGGIMLKETGQGYQRFLLYNRSPHPPEKCVE-EFQSLTSCL 170 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,036,575 Number of Sequences: 219361 Number of extensions: 1539003 Number of successful extensions: 4605 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 4389 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4595 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3985467738 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
