ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart32a06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 111 2e-21
2gb|AC083942.8| Genomic sequence for Oryza sativa, Nipponbare str... 111 2e-21
3gb|AY224461.1| Oryza sativa (japonica cultivar-group) isolate 23... 111 2e-21
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 111 2e-21
5dbj|AK070052.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 2e-21
6gb|AY596524.1| Saccharum officinarum clone SCCCLR1079D12, comple... 92 2e-15
7gb|AY107443.1| Zea mays PCO116581 mRNA sequence 58 3e-05
8emb|AJ243174.2|PFL243174 Pseudomonas fluorescens fumC (partial),... 46 0.11
9emb|BX927168.11| Human DNA sequence from clone DAMA-367I24 on ch... 44 0.45
10ref|XM_393424.2| PREDICTED: Apis mellifera similar to ENSANGP000... 44 0.45
11gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequ... 44 0.45
12gb|AC093047.1| Drosophila melanogaster, chromosome 2L, region 38... 42 1.8
13gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chr... 42 1.8
14gb|AE003667.3| Drosophila melanogaster chromosome 2L, section 76... 42 1.8
15gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. F... 42 1.8
16gb|AC004759.1|AC004759 Drosophila melanogaster DNA sequence (P1s... 42 1.8
17ref|XM_527070.1| PREDICTED: Pan troglodytes similar to PGC-1-rel... 40 7.1
18ref|XM_359451.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 7.1
19gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 40 7.1
20gb|AY663415.1| Homo sapiens voucher Coriell Cell Repository DNA ... 40 7.1
21gb|AY663414.1| Homo sapiens voucher Coriell Cell Repository DNA ... 40 7.1
22gb|AY663413.1| Homo sapiens voucher Coriell Cell Repository DNA ... 40 7.1
23gb|AY663412.1| Homo sapiens voucher Coriell Cell Repository DNA ... 40 7.1
24gb|AY663411.1| Homo sapiens voucher Coriell Cell Repository DNA ... 40 7.1
25gb|AY663410.1| Homo sapiens voucher Coriell Cell Repository DNA ... 40 7.1
26gb|AY663409.1| Homo sapiens voucher Coriell Cell Repository DNA ... 40 7.1
27gb|AY663408.1| Homo sapiens voucher Coriell Cell Repository DNA ... 40 7.1
28gb|AY663407.1| Homo sapiens voucher Coriell Cell Repository DNA ... 40 7.1
29gb|AY663406.1| Homo sapiens voucher Coriell Cell Repository DNA ... 40 7.1
30gb|AY663405.1| Homo sapiens voucher Coriell Cell Repository DNA ... 40 7.1
31gb|AY663404.1| Homo sapiens voucher Coriell Cell Repository DNA ... 40 7.1
32gb|AY663403.1| Gorilla gorilla voucher Coriell Cell Repository D... 40 7.1
33gb|AY663401.1| Pan troglodytes voucher Coriell Cell Repository D... 40 7.1
34gb|AY663400.1| Homo sapiens voucher Coriell Cell Repository DNA ... 40 7.1
35gb|AY663399.1| Homo sapiens voucher Coriell Cell Repository DNA ... 40 7.1
36gb|AY663398.1| Homo sapiens voucher Coriell Cell Repository DNA ... 40 7.1
37gb|AY663397.1| Homo sapiens voucher Coriell Cell Repository DNA ... 40 7.1
38gb|AY663396.1| Homo sapiens voucher Coriell Cell Repository DNA ... 40 7.1
39gb|AY663395.1| Homo sapiens voucher Coriell Cell Repository DNA ... 40 7.1
40gb|AY663394.1| Homo sapiens voucher Coriell Cell Repository DNA ... 40 7.1
41gb|AY663393.1| Homo sapiens voucher Coriell Cell Repository DNA ... 40 7.1
42ref|XM_755583.1| Ustilago maydis 521 hypothetical protein (UM045... 40 7.1
43ref|XM_389049.1| Gibberella zeae PH-1 chromosome 2 hypothetical ... 40 7.1
44gb|AC111008.6| Mus musculus BAC clone RP23-415J21 from chromosom... 40 7.1
45emb|AL731683.12| Human DNA sequence from clone XXbac-254C11 on c... 40 7.1
46emb|Z84489.1|HS93N13 Human DNA sequence from clone RP1-93N13 on ... 40 7.1
47emb|BX248406.4| Human DNA sequence from clone DASS-390M22 on chr... 40 7.1
48emb|AL935026.4| Human DNA sequence from clone DAQB-109B10 on chr... 40 7.1
49emb|AL662789.11| Human DNA sequence from clone XXbac-254F23 on c... 40 7.1
50ref|XM_786947.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 7.1
51gb|AC159194.3| Mus musculus BAC clone RP23-469D18 from chromosom... 40 7.1
52emb|AL031863.1|DMCEG0003 Drosophila melanogaster cosmid EG0003 40 7.1
53emb|CR753846.4| Human DNA sequence from clone DADB-249P12 on chr... 40 7.1
54emb|CR933859.5| Human DNA sequence from clone DAMC-134I7 on chro... 40 7.1
55emb|AL663031.15| Mouse DNA sequence from clone RP23-29H5 on chro... 40 7.1
56emb|CR753901.9| Human DNA sequence from clone DADB-166N19 on chr... 40 7.1
57gb|AC010049.7| Drosophila melanogaster 3L BAC RPCI98-3O18 (Roswe... 40 7.1
58dbj|AK097297.1| Homo sapiens cDNA FLJ39978 fis, clone SPLEN2029380 40 7.1
59ref|NM_168912.1| Drosophila melanogaster CG7597-RB, transcript v... 40 7.1
60ref|NM_141068.2| Drosophila melanogaster CG7597-RA, transcript v... 40 7.1
61ref|NM_137319.2| Drosophila melanogaster CG6426-RA (CG6426), mRNA 40 7.1
62gb|AC010701.3| Drosophila melanogaster 3L BAC RP98-26P10 (Roswel... 40 7.1
63gb|AY071664.1| Drosophila melanogaster RH01665 full length cDNA 40 7.1
64gb|AY069806.1| Drosophila melanogaster SD04681 full length cDNA 40 7.1
65ref|XM_945818.1| PREDICTED: Homo sapiens similar to HLA class II... 40 7.1
66ref|XM_942240.1| PREDICTED: Homo sapiens similar to HLA class II... 40 7.1
67gb|AC099030.1| Drosophila melanogaster, chromosome 2R, region 53... 40 7.1
68gb|AC099021.1| Drosophila melanogaster, chromosome 2R, region 53... 40 7.1
69gb|AC148700.1| Macaca mulatta Major Histocompatibility Complex B... 40 7.1
70gb|AC148661.1| Macaca mulatta Major Histocompatibility Complex B... 40 7.1
71dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.1
72gb|AC022100.7| Homo sapiens chromosome 5 clone CTB-66A9, complet... 40 7.1
73gb|AC069145.5|AC069145 Oryza sativa chromosome 10 BAC OSJNBb0094... 40 7.1
74gb|AE003805.3| Drosophila melanogaster chromosome 2R, section 45... 40 7.1
75gb|AE003594.3| Drosophila melanogaster chromosome 3L, section 75... 40 7.1
76gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 7.1
77gb|AC004641.1|AC004641 Drosophila melanogaster DNA sequence (P1s... 40 7.1
78gb|U92032.1|HSU92032 Homo sapiens P1 clone 797a11 containing MHC... 40 7.1
79gb|U46195.1|PAU46195 Pichia angusta Per10p (PER10) gene, complet... 40 7.1 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  111 bits (56), Expect = 2e-21
 Identities = 174/212 (82%), Gaps = 6/212 (2%)
 Strand = Plus / Plus

                                                                           
Query: 236     tcagcggaagccgccgtcggcccaatatgacccgccggcggttccattctgattgctccc 295
               ||||||||||||||| || | |||||| || || |||| |||||| ||||||||||||||
Sbjct: 9428074 tcagcggaagccgccttccgtccaataggagccaccggtggttccgttctgattgctccc 9428133

                                                                           
Query: 296     gctcttgttggcagggctgtgatggctgtaactatcaaaaccgtcatctttcgcatcgtc 355
                  |||| |||  | ||||||||   ||||||||||||||  |||||| ||| |||| ||
Sbjct: 9428134 ---cttgctgggggtgctgtgat---tgtaactatcaaaattgtcatccttcccatcatc 9428187

                                                                           
Query: 356     ccagccggcccacgagtcgctgccctgacttgtcttggcaggctcttccttcttgtcttg 415
               |||||||||||| ||||| ||||  || | |   || |||||||| ||||||||| || |
Sbjct: 9428188 ccagccggcccaggagtcactgctttggcgttctttcgcaggctcatccttcttgactgg 9428247

                                               
Query: 416     gtcatcccaatcatcccaagaattggaattgt 447
                ||||||||||||||||| |||||||||||||
Sbjct: 9428248 ctcatcccaatcatcccaggaattggaattgt 9428279
to top
>gb|AC083942.8| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0002D01, from chromosome 3, complete sequence
          Length = 187589

 Score =  111 bits (56), Expect = 2e-21
 Identities = 174/212 (82%), Gaps = 6/212 (2%)
 Strand = Plus / Plus

                                                                          
Query: 236    tcagcggaagccgccgtcggcccaatatgacccgccggcggttccattctgattgctccc 295
              ||||||||||||||| || | |||||| || || |||| |||||| ||||||||||||||
Sbjct: 125474 tcagcggaagccgccttccgtccaataggagccaccggtggttccgttctgattgctccc 125533

                                                                          
Query: 296    gctcttgttggcagggctgtgatggctgtaactatcaaaaccgtcatctttcgcatcgtc 355
                 |||| |||  | ||||||||   ||||||||||||||  |||||| ||| |||| ||
Sbjct: 125534 ---cttgctgggggtgctgtgat---tgtaactatcaaaattgtcatccttcccatcatc 125587

                                                                          
Query: 356    ccagccggcccacgagtcgctgccctgacttgtcttggcaggctcttccttcttgtcttg 415
              |||||||||||| ||||| ||||  || | |   || |||||||| ||||||||| || |
Sbjct: 125588 ccagccggcccaggagtcactgctttggcgttctttcgcaggctcatccttcttgactgg 125647

                                              
Query: 416    gtcatcccaatcatcccaagaattggaattgt 447
               ||||||||||||||||| |||||||||||||
Sbjct: 125648 ctcatcccaatcatcccaggaattggaattgt 125679
to top
>gb|AY224461.1| Oryza sativa (japonica cultivar-group) isolate 23497 ADP
           ribosylation GTPase-like protein mRNA, partial cds
          Length = 927

 Score =  111 bits (56), Expect = 2e-21
 Identities = 174/212 (82%), Gaps = 6/212 (2%)
 Strand = Plus / Minus

                                                                       
Query: 236 tcagcggaagccgccgtcggcccaatatgacccgccggcggttccattctgattgctccc 295
           ||||||||||||||| || | |||||| || || |||| |||||| ||||||||||||||
Sbjct: 927 tcagcggaagccgccttccgtccaataggagccaccggtggttccgttctgattgctccc 868

                                                                       
Query: 296 gctcttgttggcagggctgtgatggctgtaactatcaaaaccgtcatctttcgcatcgtc 355
              |||| |||  | ||||||||   ||||||||||||||  |||||| ||| |||| ||
Sbjct: 867 ---cttgctgggggtgctgtgat---tgtaactatcaaaattgtcatccttcccatcatc 814

                                                                       
Query: 356 ccagccggcccacgagtcgctgccctgacttgtcttggcaggctcttccttcttgtcttg 415
           |||||||||||| ||||| ||||  || | |   || |||||||| ||||||||| || |
Sbjct: 813 ccagccggcccaggagtcactgctttggcgttctttcgcaggctcatccttcttgactgg 754

                                           
Query: 416 gtcatcccaatcatcccaagaattggaattgt 447
            ||||||||||||||||| |||||||||||||
Sbjct: 753 ctcatcccaatcatcccaggaattggaattgt 722
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  111 bits (56), Expect = 2e-21
 Identities = 174/212 (82%), Gaps = 6/212 (2%)
 Strand = Plus / Plus

                                                                           
Query: 236     tcagcggaagccgccgtcggcccaatatgacccgccggcggttccattctgattgctccc 295
               ||||||||||||||| || | |||||| || || |||| |||||| ||||||||||||||
Sbjct: 9426195 tcagcggaagccgccttccgtccaataggagccaccggtggttccgttctgattgctccc 9426254

                                                                           
Query: 296     gctcttgttggcagggctgtgatggctgtaactatcaaaaccgtcatctttcgcatcgtc 355
                  |||| |||  | ||||||||   ||||||||||||||  |||||| ||| |||| ||
Sbjct: 9426255 ---cttgctgggggtgctgtgat---tgtaactatcaaaattgtcatccttcccatcatc 9426308

                                                                           
Query: 356     ccagccggcccacgagtcgctgccctgacttgtcttggcaggctcttccttcttgtcttg 415
               |||||||||||| ||||| ||||  || | |   || |||||||| ||||||||| || |
Sbjct: 9426309 ccagccggcccaggagtcactgctttggcgttctttcgcaggctcatccttcttgactgg 9426368

                                               
Query: 416     gtcatcccaatcatcccaagaattggaattgt 447
                ||||||||||||||||| |||||||||||||
Sbjct: 9426369 ctcatcccaatcatcccaggaattggaattgt 9426400
to top
>dbj|AK070052.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023040P09, full
            insert sequence
          Length = 1888

 Score =  111 bits (56), Expect = 2e-21
 Identities = 174/212 (82%), Gaps = 6/212 (2%)
 Strand = Plus / Minus

                                                                        
Query: 236  tcagcggaagccgccgtcggcccaatatgacccgccggcggttccattctgattgctccc 295
            ||||||||||||||| || | |||||| || || |||| |||||| ||||||||||||||
Sbjct: 1378 tcagcggaagccgccttccgtccaataggagccaccggtggttccgttctgattgctccc 1319

                                                                        
Query: 296  gctcttgttggcagggctgtgatggctgtaactatcaaaaccgtcatctttcgcatcgtc 355
               |||| |||  | ||||||||   ||||||||||||||  |||||| ||| |||| ||
Sbjct: 1318 ---cttgctgggggtgctgtgat---tgtaactatcaaaattgtcatccttcccatcatc 1265

                                                                        
Query: 356  ccagccggcccacgagtcgctgccctgacttgtcttggcaggctcttccttcttgtcttg 415
            |||||||||||| ||||| ||||  || | |   || |||||||| ||||||||| || |
Sbjct: 1264 ccagccggcccaggagtcactgctttggcgttctttcgcaggctcatccttcttgactgg 1205

                                            
Query: 416  gtcatcccaatcatcccaagaattggaattgt 447
             ||||||||||||||||| |||||||||||||
Sbjct: 1204 ctcatcccaatcatcccaggaattggaattgt 1173
to top
>gb|AY596524.1| Saccharum officinarum clone SCCCLR1079D12, complete sequence
          Length = 1757

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 109/130 (83%)
 Strand = Plus / Minus

                                                                        
Query: 327  ctatcaaaaccgtcatctttcgcatcgtcccagccggcccacgagtcgctgccctgactt 386
            ||||||||||| ||||| ||| |||| |||||||| ||||| ||||| |||| |||    
Sbjct: 1361 ctatcaaaaccatcatccttcccatcatcccagccagcccaggagtcactgctctggtgc 1302

                                                                        
Query: 387  gtcttggcaggctcttccttcttgtcttggtcatcccaatcatcccaagaattggaattg 446
            |  || |||||||| |||||||||  ||||||||||||||| ||||||||| ||||||||
Sbjct: 1301 ggttttgcaggctcatccttcttgcattggtcatcccaatcgtcccaagaactggaattg 1242

                      
Query: 447  tggttcttcg 456
            | ||||||||
Sbjct: 1241 ttgttcttcg 1232
to top
>gb|AY107443.1| Zea mays PCO116581 mRNA sequence
          Length = 832

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 98/121 (80%)
 Strand = Plus / Minus

                                                                       
Query: 327 ctatcaaaaccgtcatctttcgcatcgtcccagccggcccacgagtcgctgccctgactt 386
           ||||||||||| ||||| ||| |||| |||||||| ||||| ||||| |||| |||    
Sbjct: 491 ctatcaaaaccatcatccttcccatcatcccagccagcccaggagtcactgctctggtgc 432

                                                                       
Query: 387 gtcttggcaggctcttccttcttgtcttggtcatcccaatcatcccaagaattggaattg 446
           |  || |||||||| || |||||| || |||| ||||| || ||||||||| ||||||||
Sbjct: 431 ggtttcgcaggctcatctttcttgcctgggtcgtcccagtcgtcccaagaactggaattg 372

            
Query: 447 t 447
           |
Sbjct: 371 t 371
to top
>emb|AJ243174.2|PFL243174 Pseudomonas fluorescens fumC (partial), ORF1, bolA, ORF3, ORF4, and
            abcX (partial) genes
          Length = 3997

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 483  ccgttgctgttgccattgctggt 505
            |||||||||||||||||||||||
Sbjct: 3345 ccgttgctgttgccattgctggt 3367
to top
>emb|BX927168.11| Human DNA sequence from clone DAMA-367I24 on chromosome 6, complete
             sequence
          Length = 109326

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 390   ttggcaggctcttccttcttgt 411
             ||||||||||||||||||||||
Sbjct: 18439 ttggcaggctcttccttcttgt 18418
to top
>ref|XM_393424.2| PREDICTED: Apis mellifera similar to ENSANGP00000020223
           (LOC409932), mRNA
          Length = 2406

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 477 ttccagccgttgctgttgccattgct 502
           |||||||||||||||||||| |||||
Sbjct: 218 ttccagccgttgctgttgccgttgct 193
to top
>gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequence
          Length = 2906179

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 33     gctggatggcagtttcaaatga 54
              ||||||||||||||||||||||
Sbjct: 435389 gctggatggcagtttcaaatga 435410
to top
>gb|AC093047.1| Drosophila melanogaster, chromosome 2L, region 38D-38E, BAC clone
             BACR31P14, complete sequence
          Length = 156806

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 485   gttgctgttgccattgctggt 505
             |||||||||||||||||||||
Sbjct: 97664 gttgctgttgccattgctggt 97684
to top
>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete
               sequence
          Length = 4332241

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 388     tcttggcaggctcttccttct 408
               |||||||||||||||||||||
Sbjct: 4054332 tcttggcaggctcttccttct 4054312
to top
>gb|AE003667.3| Drosophila melanogaster chromosome 2L, section 76 of 83 of the complete
              sequence
          Length = 257666

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 485    gttgctgttgccattgctggt 505
              |||||||||||||||||||||
Sbjct: 215686 gttgctgttgccattgctggt 215706
to top
>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome
               I, complete sequence
          Length = 4277185

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 388     tcttggcaggctcttccttct 408
               |||||||||||||||||||||
Sbjct: 3992914 tcttggcaggctcttccttct 3992894
to top
>gb|AC004759.1|AC004759 Drosophila melanogaster DNA sequence (P1s DS04217 (D56) and DS00582
              (D85)), complete sequence
          Length = 142799

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 485    gttgctgttgccattgctggt 505
              |||||||||||||||||||||
Sbjct: 121269 gttgctgttgccattgctggt 121249
to top
>ref|XM_527070.1| PREDICTED: Pan troglodytes similar to PGC-1-related estrogen
           receptor alpha coactivator (LOC471692), mRNA
          Length = 4485

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 357 cagccggcccacgagtcgct 376
           ||||||||||||||||||||
Sbjct: 36  cagccggcccacgagtcgct 55
to top
>ref|XM_359451.1| Magnaporthe grisea 70-15 hypothetical protein (MG05326.4) partial
           mRNA
          Length = 1512

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 482 gccgttgctgttgccattgctggt 505
           |||||||| |||||||||||||||
Sbjct: 189 gccgttgccgttgccattgctggt 166
to top
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 483     ccgttgctgttgccattgctggtc 506
               |||||||||||||| |||||||||
Sbjct: 1902160 ccgttgctgttgccgttgctggtc 1902183
to top
>gb|AY663415.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA03715 MHC
             class II antigen (HLA-DQB1) gene, MHC class II antigen
             (HLA-DQA1) gene, HLA-DQA1-DQA1*0103 allele, and MHC class
             II antigen (HLA-DRB1) gene, complete cds
          Length = 100761

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 390   ttggcaggctcttccttctt 409
             ||||||||||||||||||||
Sbjct: 15741 ttggcaggctcttccttctt 15760
to top
>gb|AY663414.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA03715 MHC
             class II antigen (HLA-DQB1) gene and MHC class II antigen
             (HLA-DQA1) gene, HLA-DQA1-DQA1*0103 allele, complete cds;
             and MHC class II antigen (HLA-DRB1) gene, partial cds
          Length = 118048

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 390   ttggcaggctcttccttctt 409
             ||||||||||||||||||||
Sbjct: 40235 ttggcaggctcttccttctt 40254
to top
>gb|AY663413.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA14663 MHC
             class II antigen (HLA-DQB1) gene, MHC class II antigen
             (HLA-DQA1) gene, HLA-DQA1-DQA1*010201 allele, and MHC
             class II antigen (HLA-DRB1) gene, complete cds
          Length = 117527

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 390   ttggcaggctcttccttctt 409
             ||||||||||||||||||||
Sbjct: 31729 ttggcaggctcttccttctt 31748
to top
>gb|AY663412.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA00576 MHC
             class II antigen (HLA-DQB1) gene, MHC class II antigen
             (HLA-DQA1) gene, HLA-DQA1-DQA1*0505 allele, and MHC class
             II antigen (HLA-DRB1) gene, HLA-DRB1-DRB1*110101 allele,
             complete cds
          Length = 108785

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 390   ttggcaggctcttccttctt 409
             ||||||||||||||||||||
Sbjct: 11201 ttggcaggctcttccttctt 11220
to top
>gb|AY663411.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA14663 MHC
             class II antigen (HLA-DQB1) gene, HLA-DQB1-DQB1*0602
             allele, MHC class II antigen (HLA-DQA1) gene,
             HLA-DQA1-DQA1*010201 allele, and MHC class II antigen
             (HLA-DRB1) gene, complete cds
          Length = 99966

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 390   ttggcaggctcttccttctt 409
             ||||||||||||||||||||
Sbjct: 11248 ttggcaggctcttccttctt 11267
to top
>gb|AY663410.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA00576 MHC
             class II antigen (HLA-DQB1) gene, HLA-DQB1-DQB1*030302
             allele and MHC class II antigen (HLA-DQA1) gene,
             HLA-DQA1-DQA1*0302 allele, complete cds; and MHC class II
             antigen (HLA-DRB1) gene, partial cds
          Length = 105171

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 390   ttggcaggctcttccttctt 409
             ||||||||||||||||||||
Sbjct: 32421 ttggcaggctcttccttctt 32440
to top
>gb|AY663409.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA04535 MHC
             class II antigen (HLA-DQB1) gene and MHC class II antigen
             (HLA-DQA1) gene, HLA-DQA1-DQA1*0505 allele, complete cds;
             and MHC class II antigen (HLA-DRB1) gene, partial cds
          Length = 77506

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 390   ttggcaggctcttccttctt 409
             ||||||||||||||||||||
Sbjct: 11649 ttggcaggctcttccttctt 11668
to top
>gb|AY663408.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA04535 MHC
            class II antigen (HLA-DQB1) gene, MHC class II antigen
            (HLA-DQA1) gene, HLA-DQA1-DQA1*010401 allele, and MHC
            class II antigen (HLA-DRB1) gene, HLA-DRB1-DRB1*140501
            allele, complete cds
          Length = 100515

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 390  ttggcaggctcttccttctt 409
            ||||||||||||||||||||
Sbjct: 9909 ttggcaggctcttccttctt 9928
to top
>gb|AY663407.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA10923 MHC
             class II antigen (HLA-DQB1) gene, HLA-DQB1-DQB1*020101
             allele, MHC class II antigen (HLA-DQA1) gene,
             HLA-DQA1-DQA1*050101 allele, and MHC class II antigen
             (HLA-DRB1) gene, HLA-DRB1-DRB1*030101 allele, complete cds
          Length = 106318

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 390   ttggcaggctcttccttctt 409
             ||||||||||||||||||||
Sbjct: 21802 ttggcaggctcttccttctt 21821
to top
>gb|AY663406.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA10923 MHC
             class II antigen (HLA-DQB1) gene, HLA-DQB1-DQB1*0602
             allele, MHC class II antigen (HLA-DQA1) gene,
             HLA-DQA1-DQA1*010201 allele, and MHC class II antigen
             (HLA-DRB1) gene, HLA-DRB1-DRB1*150101 allele, complete cds
          Length = 103395

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 390   ttggcaggctcttccttctt 409
             ||||||||||||||||||||
Sbjct: 22221 ttggcaggctcttccttctt 22240
to top
>gb|AY663405.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA10540 MHC
             class II antigen (HLA-DQB1) gene, MHC class II antigen
             (HLA-DQA1) gene, HLA-DQA1-DQA1*010401 allele, and MHC
             class II antigen (HLA-DRB1) gene, complete cds
          Length = 116082

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 390   ttggcaggctcttccttctt 409
             ||||||||||||||||||||
Sbjct: 12238 ttggcaggctcttccttctt 12257
to top
>gb|AY663404.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA10540 MHC
             class II antigen (HLA-DQB1) gene, HLA-DQB1-DQB1*030302
             allele and MHC class II antigen (HLA-DQA1) gene,
             HLA-DQA1-DQA1*0302 allele, complete cds; and MHC class II
             antigen (HLA-DRB1) gene, partial cds
          Length = 109441

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 390   ttggcaggctcttccttctt 409
             ||||||||||||||||||||
Sbjct: 37715 ttggcaggctcttccttctt 37734
to top
>gb|AY663403.1| Gorilla gorilla voucher Coriell Cell Repository DNA sample NG05251 MHC
             class II antigen (HLA-DQB1) and MHC class II antigen
             (HLA-DQA1) genes, complete cds
          Length = 70727

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 390   ttggcaggctcttccttctt 409
             ||||||||||||||||||||
Sbjct: 35343 ttggcaggctcttccttctt 35362
to top
>gb|AY663401.1| Pan troglodytes voucher Coriell Cell Repository DNA sample NS03646 MHC
             class II antigen (HLA-DQB1), MHC class II antigen
             (HLA-DQA1), and MHC class II antigen (HLA-DRB1) genes,
             complete cds
          Length = 111437

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 390   ttggcaggctcttccttctt 409
             ||||||||||||||||||||
Sbjct: 16759 ttggcaggctcttccttctt 16778
to top
>gb|AY663400.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA01018 MHC
             class II antigen (HLA-DQB1) gene, HLA-DQB1-DQB1*050101
             allele, MHC class II antigen (HLA-DQA1) gene,
             HLA-DQA1-DQA1*010102 allele, and MHC class II antigen
             (HLA-DRB1) gene, complete cds
          Length = 143390

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 390   ttggcaggctcttccttctt 409
             ||||||||||||||||||||
Sbjct: 42169 ttggcaggctcttccttctt 42188
to top
>gb|AY663399.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA01018 MHC
             class II antigen (HLA-DQB1) gene, HLA-DQB1-DQB1*020101
             allele, MHC class II antigen (HLA-DQA1) gene,
             HLA-DQA1-DQA1*050101 allele, and MHC class II antigen
             (HLA-DRB1) gene, HLA-DRB1-DRB1*030101 allele, complete cds
          Length = 105464

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 390   ttggcaggctcttccttctt 409
             ||||||||||||||||||||
Sbjct: 15117 ttggcaggctcttccttctt 15136
to top
>gb|AY663398.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA01960 MHC
             class II antigen (HLA-DQB1) gene, HLA-DQB1-DQB1*030201
             allele and MHC class II antigen (HLA-DQA1) gene,
             HLA-DQA1-DQA1*030101 allele, complete cds
          Length = 73220

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 390   ttggcaggctcttccttctt 409
             ||||||||||||||||||||
Sbjct: 17743 ttggcaggctcttccttctt 17762
to top
>gb|AY663397.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA01960 MHC
             class II antigen (HLA-DQB1), MHC class II antigen
             (HLA-DQA1), and MHC class II antigen (HLA-DRB1) genes,
             complete cds
          Length = 94591

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 390   ttggcaggctcttccttctt 409
             ||||||||||||||||||||
Sbjct: 11403 ttggcaggctcttccttctt 11422
to top
>gb|AY663396.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA14660 MHC
             class II antigen (HLA-DQB1) gene, HLA-DQB1-DQB1*050101
             allele and MHC class II antigen (HLA-DQA1) gene, complete
             cds; and MHC class II antigen (HLA-DRB1) gene, partial cds
          Length = 100091

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 390   ttggcaggctcttccttctt 409
             ||||||||||||||||||||
Sbjct: 21881 ttggcaggctcttccttctt 21900
to top
>gb|AY663395.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA14660 MHC
             class II antigen (HLA-DQB1) gene, HLA-DQB1-DQB1*0602
             allele, MHC class II antigen (HLA-DQA1) gene,
             HLA-DQA1-DQA1*010201 allele, and MHC class II antigen
             (HLA-DRB1) gene, complete cds
          Length = 104996

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 390   ttggcaggctcttccttctt 409
             ||||||||||||||||||||
Sbjct: 11107 ttggcaggctcttccttctt 11126
to top
>gb|AY663394.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA14661 MHC
             class II antigen (HLA-DQB1) gene, MHC class II antigen
             (HLA-DQA1) gene, HLA-DQA1-DQA1*0505 allele, and MHC class
             II antigen (HLA-DRB1) gene, HLA-DRB1-DRB1*110401 allele,
             complete cds
          Length = 127159

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 390   ttggcaggctcttccttctt 409
             ||||||||||||||||||||
Sbjct: 30665 ttggcaggctcttccttctt 30684
to top
>gb|AY663393.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA14661 MHC
             class II antigen (HLA-DQB1) gene and MHC class II antigen
             (HLA-DQA1) gene, HLA-DQA1-DQA1*0303 allele, complete cds;
             and MHC class II antigen (HLA-DRB1) gene, partial cds
          Length = 78546

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 390   ttggcaggctcttccttctt 409
             ||||||||||||||||||||
Sbjct: 11649 ttggcaggctcttccttctt 11668
to top
>ref|XM_755583.1| Ustilago maydis 521 hypothetical protein (UM04529.1) partial mRNA
          Length = 5004

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 412 cttggtcatcccaatcatcc 431
           ||||||||||||||||||||
Sbjct: 244 cttggtcatcccaatcatcc 225
to top
>ref|XM_389049.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG08873.1)
            partial mRNA
          Length = 1737

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 482  gccgttgctgttgccattgc 501
            ||||||||||||||||||||
Sbjct: 1329 gccgttgctgttgccattgc 1310
to top
>gb|AC111008.6| Mus musculus BAC clone RP23-415J21 from chromosome 7, complete sequence
          Length = 193593

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 144    tatcctgaaataataaccaccacc 167
              ||||||||||||||| ||||||||
Sbjct: 111113 tatcctgaaataatacccaccacc 111136
to top
>emb|AL731683.12| Human DNA sequence from clone XXbac-254C11 on chromosome 6, complete
             sequence
          Length = 83878

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 390   ttggcaggctcttccttctt 409
             ||||||||||||||||||||
Sbjct: 16707 ttggcaggctcttccttctt 16688
to top
>emb|Z84489.1|HS93N13 Human DNA sequence from clone RP1-93N13 on chromosome 6p21 Contains
            the HLA-DRB1*03011 and HLA-DQA1*05011 genes for major
            histocompatibility complex class II DR beta 1 and DQ
            alpha 1, a CpG island, ESTs, STSs and GSSs, complete
            sequence
          Length = 86896

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 390  ttggcaggctcttccttctt 409
            ||||||||||||||||||||
Sbjct: 1599 ttggcaggctcttccttctt 1618
to top
>emb|BX248406.4| Human DNA sequence from clone DASS-390M22 on chromosome 6, complete
             sequence
          Length = 124787

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 390   ttggcaggctcttccttctt 409
             ||||||||||||||||||||
Sbjct: 35070 ttggcaggctcttccttctt 35051
to top
>emb|AL935026.4| Human DNA sequence from clone DAQB-109B10 on chromosome 6 Contains the
             HLA-DQA1 gene for the major histocompatibility complex,
             class II, DQ alpha 1 protein, the HLA-DQB1 gene for major
             histocompatibility complex, class II, DQ beta 1 protein
             and one CpG island, complete sequence
          Length = 39179

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 390   ttggcaggctcttccttctt 409
             ||||||||||||||||||||
Sbjct: 19384 ttggcaggctcttccttctt 19365
to top
>emb|AL662789.11| Human DNA sequence from clone XXbac-254F23 on chromosome 6 contains the
             5' end of the HLA-DRB1 gene for major histocompatibility
             complex, class II, DR beta 1, the HLA-DQA1 gene for major
             histocompatibility complex, class II, DQ alpha 1, the
             HLA-DQB1 gene for major histocompatibility complex, class
             II, DQ beta 1, a cytochrome C oxidase polypeptide III
             pseudogene, a major histocompatibility complex, class II,
             beta polypeptide pseudogene and two CpG islands, complete
             sequence
          Length = 147557

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 390   ttggcaggctcttccttctt 409
             ||||||||||||||||||||
Sbjct: 70316 ttggcaggctcttccttctt 70297
to top
>ref|XM_786947.1| PREDICTED: Strongylocentrotus purpuratus similar to High mobility
            group protein 2 (HMG-2) (LOC587204), mRNA
          Length = 2882

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 182  tttctggcatataacaattc 201
            ||||||||||||||||||||
Sbjct: 2478 tttctggcatataacaattc 2459
to top
>gb|AC159194.3| Mus musculus BAC clone RP23-469D18 from chromosome 7, complete sequence
          Length = 213870

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 144    tatcctgaaataataaccaccacc 167
              ||||||||||||||| ||||||||
Sbjct: 167969 tatcctgaaataatacccaccacc 167992
to top
>emb|AL031863.1|DMCEG0003 Drosophila melanogaster cosmid EG0003
          Length = 37688

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 245  gccgccgtcggcccaatatg 264
            ||||||||||||||||||||
Sbjct: 8490 gccgccgtcggcccaatatg 8509
to top
>emb|CR753846.4| Human DNA sequence from clone DADB-249P12 on chromosome 6, complete
             sequence
          Length = 128049

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 390   ttggcaggctcttccttctt 409
             ||||||||||||||||||||
Sbjct: 20503 ttggcaggctcttccttctt 20484
to top
>emb|CR933859.5| Human DNA sequence from clone DAMC-134I7 on chromosome 6, complete
             sequence
          Length = 83682

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 390   ttggcaggctcttccttctt 409
             ||||||||||||||||||||
Sbjct: 30511 ttggcaggctcttccttctt 30492
to top
>emb|AL663031.15| Mouse DNA sequence from clone RP23-29H5 on chromosome 11 Contains the 3'
              end of the Sox30 gene for SRY-box containing gene 30, a
              large ribosomal protein (Rplp1) P1 pseudogene, a novel
              gene, the Adam19 gene for a disintegrin and
              metalloproteinase domain 19 (meltrin beta), the 3' end of a
              novel gene and a CpG island, complete sequence
          Length = 181021

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 394    caggctcttccttcttgtct 413
              ||||||||||||||||||||
Sbjct: 156727 caggctcttccttcttgtct 156708
to top
>emb|CR753901.9| Human DNA sequence from clone DADB-166N19 on chromosome 6, complete
             sequence
          Length = 110625

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 390   ttggcaggctcttccttctt 409
             ||||||||||||||||||||
Sbjct: 49175 ttggcaggctcttccttctt 49156
to top
>gb|AC010049.7| Drosophila melanogaster 3L BAC RPCI98-3O18 (Roswell Park Cancer Institute
              Drosophila BAC library) complete sequence
          Length = 168058

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 483    ccgttgctgttgccattgctggtctcct 510
              ||||||||||||| ||||||| ||||||
Sbjct: 157395 ccgttgctgttgctattgctgttctcct 157368
to top
>dbj|AK097297.1| Homo sapiens cDNA FLJ39978 fis, clone SPLEN2029380
          Length = 2291

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 390  ttggcaggctcttccttctt 409
            ||||||||||||||||||||
Sbjct: 1087 ttggcaggctcttccttctt 1106
to top
>ref|NM_168912.1| Drosophila melanogaster CG7597-RB, transcript variant B (CG7597),
            mRNA
          Length = 5051

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 483  ccgttgctgttgccattgctggtctcct 510
            ||||||||||||| ||||||| ||||||
Sbjct: 2429 ccgttgctgttgctattgctgttctcct 2402
to top
>ref|NM_141068.2| Drosophila melanogaster CG7597-RA, transcript variant A (CG7597),
            mRNA
          Length = 4773

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 483  ccgttgctgttgccattgctggtctcct 510
            ||||||||||||| ||||||| ||||||
Sbjct: 2151 ccgttgctgttgctattgctgttctcct 2124
to top
>ref|NM_137319.2| Drosophila melanogaster CG6426-RA (CG6426), mRNA
          Length = 726

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 245 gccgccgtcggcccaatatg 264
           ||||||||||||||||||||
Sbjct: 342 gccgccgtcggcccaatatg 323
to top
>gb|AC010701.3| Drosophila melanogaster 3L BAC RP98-26P10 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 174920

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 483    ccgttgctgttgccattgctggtctcct 510
              ||||||||||||| ||||||| ||||||
Sbjct: 150787 ccgttgctgttgctattgctgttctcct 150814
to top
>gb|AY071664.1| Drosophila melanogaster RH01665 full length cDNA
          Length = 735

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 245 gccgccgtcggcccaatatg 264
           ||||||||||||||||||||
Sbjct: 341 gccgccgtcggcccaatatg 322
to top
>gb|AY069806.1| Drosophila melanogaster SD04681 full length cDNA
          Length = 4197

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 483  ccgttgctgttgccattgctggtctcct 510
            ||||||||||||| ||||||| ||||||
Sbjct: 2087 ccgttgctgttgctattgctgttctcct 2060
to top
>ref|XM_945818.1| PREDICTED: Homo sapiens similar to HLA class II histocompatibility
            antigen, DQ(W1.1) beta chain precursor (DQB1*0501),
            transcript variant 2 (LOC650557), mRNA
          Length = 5741

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 390  ttggcaggctcttccttctt 409
            ||||||||||||||||||||
Sbjct: 3168 ttggcaggctcttccttctt 3187
to top
>ref|XM_942240.1| PREDICTED: Homo sapiens similar to HLA class II histocompatibility
            antigen, DQ(W1.1) beta chain precursor (DQB1*0501),
            transcript variant 1 (LOC650557), mRNA
          Length = 6217

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 390  ttggcaggctcttccttctt 409
            ||||||||||||||||||||
Sbjct: 3644 ttggcaggctcttccttctt 3663
to top
>gb|AC099030.1| Drosophila melanogaster, chromosome 2R, region 53F-54X, BAC clone
             BACR09M08, complete sequence
          Length = 179283

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 245   gccgccgtcggcccaatatg 264
             ||||||||||||||||||||
Sbjct: 20576 gccgccgtcggcccaatatg 20557
to top
>gb|AC099021.1| Drosophila melanogaster, chromosome 2R, region 53E-54X, BAC clone
              BACR03E17, complete sequence
          Length = 160338

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 245    gccgccgtcggcccaatatg 264
              ||||||||||||||||||||
Sbjct: 125225 gccgccgtcggcccaatatg 125206
to top
>gb|AC148700.1| Macaca mulatta Major Histocompatibility Complex BAC MMU281E18, complete
              sequence
          Length = 188725

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 390    ttggcaggctcttccttctt 409
              ||||||||||||||||||||
Sbjct: 110129 ttggcaggctcttccttctt 110148
to top
>gb|AC148661.1| Macaca mulatta Major Histocompatibility Complex BAC MMU007H18, complete
              sequence
          Length = 215614

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 390    ttggcaggctcttccttctt 409
              ||||||||||||||||||||
Sbjct: 156986 ttggcaggctcttccttctt 156967
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 482      gccgttgctgttgccattgc 501
                ||||||||||||||||||||
Sbjct: 17042054 gccgttgctgttgccattgc 17042073
to top
>gb|AC022100.7| Homo sapiens chromosome 5 clone CTB-66A9, complete sequence
          Length = 149603

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 357   cagccggcccacgagtcgct 376
             ||||||||||||||||||||
Sbjct: 30670 cagccggcccacgagtcgct 30651
to top
>gb|AC069145.5|AC069145 Oryza sativa chromosome 10 BAC OSJNBb0094K03 genomic sequence, complete
             sequence
          Length = 135216

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 482   gccgttgctgttgccattgc 501
             ||||||||||||||||||||
Sbjct: 82546 gccgttgctgttgccattgc 82565
to top
>gb|AE003805.3| Drosophila melanogaster chromosome 2R, section 45 of 73 of the complete
              sequence
          Length = 272948

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 245    gccgccgtcggcccaatatg 264
              ||||||||||||||||||||
Sbjct: 139073 gccgccgtcggcccaatatg 139054
to top
>gb|AE003594.3| Drosophila melanogaster chromosome 3L, section 75 of 83 of the complete
              sequence
          Length = 314904

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 483    ccgttgctgttgccattgctggtctcct 510
              ||||||||||||| ||||||| ||||||
Sbjct: 253997 ccgttgctgttgctattgctgttctcct 253970
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 482      gccgttgctgttgccattgc 501
                ||||||||||||||||||||
Sbjct: 17051094 gccgttgctgttgccattgc 17051113
to top
>gb|AC004641.1|AC004641 Drosophila melanogaster DNA sequence (P1s DS07321 (D175), DS05993
             (D241), and DS06306 (D173)), complete sequence
          Length = 154985

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 245   gccgccgtcggcccaatatg 264
             ||||||||||||||||||||
Sbjct: 85221 gccgccgtcggcccaatatg 85240
to top
>gb|U92032.1|HSU92032 Homo sapiens P1 clone 797a11 containing MHC class II DQ-beta (HLA-DQB)
             and MHC class II DC-alpha (HLA-DCA) genes, complete cds
          Length = 86217

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 390   ttggcaggctcttccttctt 409
             ||||||||||||||||||||
Sbjct: 50094 ttggcaggctcttccttctt 50113
to top
>gb|U46195.1|PAU46195 Pichia angusta Per10p (PER10) gene, complete cds, and tRNA-Asn
           gene, complete sequence
          Length = 3201

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 475 aattccagccgttgctgttgccat 498
           |||||| |||||||||||||||||
Sbjct: 857 aattcctgccgttgctgttgccat 834


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,266,367
Number of Sequences: 3902068
Number of extensions: 4266367
Number of successful extensions: 76054
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75787
Number of HSP's gapped (non-prelim): 267
length of query: 522
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 499
effective length of database: 17,143,297,704
effective search space: 8554505554296
effective search space used: 8554505554296
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top