>ARFF_ARATH (Q9ZTX8) Auxin response factor 6|
          Length = 933

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
 Frame = +3

Query: 72  HEGPKNILFISQQHPQCGVLVRADSTAS----FPQGHSHHHAASVD 197
           HEG K +L     H   G LV      S    FPQGHS   AAS +
Sbjct: 13  HEGEKRVLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTN 58

>COQ3_RAT (Q63159) Hexaprenyldihydroxybenzoate methyltransferase,|
           mitochondrial precursor (EC 2.1.1.114)
           (Dihydroxyhexaprenylbenzoate methyltransferase)
           (3,4-dihydroxy-5-hexaprenylbenzoate methyltransferase)
           (DHHB methyltransferase) (DHHB-MT) (DHHB-MTase)
          Length = 345

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
 Frame = -1

Query: 412 PFEFSTERSMDLDDYF----------TYIKSWSA-YQTAKDNGVELLDEDTVRAFADAWG 266
           P+EFS  R+M L  Y           TY  SW   Y T++   V+  +  T +A A +W 
Sbjct: 51  PWEFSGHRTMWLRSYRITFSCLTRLKTYRSSWKKLYSTSQT--VDSKEVKTFQALAHSWW 108

Query: 265 DDRGEVKTVRYPIFLRIGKVR 203
           D++G+   +     LR+  +R
Sbjct: 109 DEQGKFAPLHSMNDLRVPFIR 129

>Y1242_SYNY3 (P42349) Hypothetical methyltransferase sll1242 (EC 2.1.1.-) (ORF|
           N)
          Length = 536

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -1

Query: 427 EDHTGPFEFSTERSMDL-DDYFTYIKSWSAYQTAKDNGVELLDEDTV 290
           E+H  PF F+TE S+DL DD          Y  A   G+E  DE+++
Sbjct: 244 EEHQYPFRFNTEASVDLADDQELMDLMVECYFDAVFLGIETPDEESL 290

>NCAP_PIRYV (P26037) Nucleocapsid protein (Nucleoprotein)|
          Length = 427

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
 Frame = -1

Query: 409 FEFSTERSMDLDDYFT-----YIKSWSAYQTAKDNGV--ELLDEDTVRAFAD--AWGDDR 257
           F ++T RS DL   F      YIK   A   A DN    E  +  T R   +  AW DD 
Sbjct: 335 FAYATGRSSDLAQRFVLHNKEYIK---AAPDASDNSEREESKEAPTTRDVVEWLAWWDDI 391

Query: 256 GEVKTVRYPIFLR 218
           G+V+T    +F R
Sbjct: 392 GQVRTRDMEVFAR 404

>RAD5_CRYNE (Q5KPG8) DNA repair protein RAD5 (EC 3.6.1.-)|
          Length = 1198

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 102 SQQHPQCGVLVRADSTASFPQGHSHHHAASVDSGLTLPILR 224
           +  HPQ G +V      S  Q HSHH ++S     + P++R
Sbjct: 93  ASSHPQ-GTIVAPRRKRSLQQAHSHHSSSSSSPVPSAPVIR 132

>OPGH_PSEAE (Q9HUA6) Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-)|
          Length = 861

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
 Frame = -1

Query: 412 PFEFSTERSMDLDDYFTYIKSWSAYQTAKDNGVELLDEDTVRAFADAWGDDRGE----VK 245
           P E+ T R +   D +TY   W A    KD  ++   +  + A A A G  R      ++
Sbjct: 722 PEEYDTPRELRATDEYTYENRWHA---LKDGFLKAAVDPLLNALACAMGTARHNRAQAIE 778

Query: 244 TVRYPIFLRIGKV---RPESTDAA 182
           TVR     RIGK     PE  D A
Sbjct: 779 TVRGE---RIGKAIDKGPEQLDGA 799


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,778,766
Number of Sequences: 219361
Number of extensions: 1265681
Number of successful extensions: 3971
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3968
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3638905326
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)