Clone Name | rbart32a02 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_190132.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2151 Score = 252 bits (127), Expect = 1e-63 Identities = 247/287 (86%) Strand = Plus / Minus Query: 230 tttcctttgcgtggactggcacactttctgcatatgaatttttcagggacttcttcaaaa 289 |||||| |||||||||| |||||||| ||||| ||||| || |||||||| || |||||| Sbjct: 2021 tttcctctgcgtggactagcacacttcctgcagatgaacttctcagggacatcatcaaaa 1962 Query: 290 tcactgatccctgagcatcttgtgtgctgccacactccacacgcatcacacgccatcatc 349 ||||| |||||||| || || ||||| ||||| |||||||| ||||||| || | |||| Sbjct: 1961 tcactaatccctgaacacctggtgtgttgccaaactccacaaacatcacatgcaagcatc 1902 Query: 350 ctctcaccgtcgtcgtccttggcaccacaggagcagtccaccgtccagttctccaagccc 409 ||||| || || ||||||||||| ||||||| |||||| ||||||||||||||||| ||| Sbjct: 1901 ctctcgccatcatcgtccttggctccacaggtgcagtcgaccgtccagttctccaacccc 1842 Query: 410 ctctccatcctgaactgcacaattctcctgttatccccagtgcaccgtcctctcacccta 469 || ||||||||||| ||||||||||| | ||||||||||||||||| |||||| ||||| Sbjct: 1841 ctttccatcctgaattgcacaattcttcggttatccccagtgcaccttcctcttaccctc 1782 Query: 470 acaagctggctcgagtcaagcacgtgcttcacagggcttgtgtcact 516 || |||||||| ||| ||||||| |||||||| || |||||||||| Sbjct: 1781 acgagctggcttgagccaagcacatgcttcacgagggttgtgtcact 1735 Score = 95.6 bits (48), Expect = 1e-16 Identities = 69/76 (90%) Strand = Plus / Minus Query: 107 ccaacagttgctaggcgcccaattttgcccgcaccgccaacagaagatcctatctcatcc 166 ||||||||||| | |||||||| |||||| |||||||||||||| ||||||||||||||| Sbjct: 2147 ccaacagttgccatgcgcccaaatttgcctgcaccgccaacagatgatcctatctcatcc 2088 Query: 167 ttgcatctcccggcag 182 ||||| ||||| |||| Sbjct: 2087 ttgcacctccctgcag 2072
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 252 bits (127), Expect = 1e-63 Identities = 247/287 (86%) Strand = Plus / Minus Query: 230 tttcctttgcgtggactggcacactttctgcatatgaatttttcagggacttcttcaaaa 289 |||||| |||||||||| |||||||| ||||| ||||| || |||||||| || |||||| Sbjct: 38077945 tttcctctgcgtggactagcacacttcctgcagatgaacttctcagggacatcatcaaaa 38077886 Query: 290 tcactgatccctgagcatcttgtgtgctgccacactccacacgcatcacacgccatcatc 349 ||||| |||||||| || || ||||| ||||| |||||||| ||||||| || | |||| Sbjct: 38077885 tcactaatccctgaacacctggtgtgttgccaaactccacaaacatcacatgcaagcatc 38077826 Query: 350 ctctcaccgtcgtcgtccttggcaccacaggagcagtccaccgtccagttctccaagccc 409 ||||| || || ||||||||||| ||||||| |||||| ||||||||||||||||| ||| Sbjct: 38077825 ctctcgccatcatcgtccttggctccacaggtgcagtcgaccgtccagttctccaacccc 38077766 Query: 410 ctctccatcctgaactgcacaattctcctgttatccccagtgcaccgtcctctcacccta 469 || ||||||||||| ||||||||||| | ||||||||||||||||| |||||| ||||| Sbjct: 38077765 ctttccatcctgaattgcacaattcttcggttatccccagtgcaccttcctcttaccctc 38077706 Query: 470 acaagctggctcgagtcaagcacgtgcttcacagggcttgtgtcact 516 || |||||||| ||| ||||||| |||||||| || |||||||||| Sbjct: 38077705 acgagctggcttgagccaagcacatgcttcacgagggttgtgtcact 38077659 Score = 145 bits (73), Expect = 2e-31 Identities = 104/113 (92%), Gaps = 1/113 (0%) Strand = Plus / Minus Query: 70 ctcagtatttacatttcactacattatgtacagtcacccaacagttgctaggcgcccaat 129 ||||||||||||||||||| |||||||||||||||| ||||||||||| | |||||||| Sbjct: 38078107 ctcagtatttacatttcac-acattatgtacagtcatccaacagttgccatgcgcccaaa 38078049 Query: 130 tttgcccgcaccgccaacagaagatcctatctcatccttgcatctcccggcag 182 |||||| |||||||||||||| |||||||||||||||||||| ||||| |||| Sbjct: 38078048 tttgcctgcaccgccaacagatgatcctatctcatccttgcacctccctgcag 38077996
>dbj|AP003261.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0471B04 Length = 138025 Score = 252 bits (127), Expect = 1e-63 Identities = 247/287 (86%) Strand = Plus / Minus Query: 230 tttcctttgcgtggactggcacactttctgcatatgaatttttcagggacttcttcaaaa 289 |||||| |||||||||| |||||||| ||||| ||||| || |||||||| || |||||| Sbjct: 45979 tttcctctgcgtggactagcacacttcctgcagatgaacttctcagggacatcatcaaaa 45920 Query: 290 tcactgatccctgagcatcttgtgtgctgccacactccacacgcatcacacgccatcatc 349 ||||| |||||||| || || ||||| ||||| |||||||| ||||||| || | |||| Sbjct: 45919 tcactaatccctgaacacctggtgtgttgccaaactccacaaacatcacatgcaagcatc 45860 Query: 350 ctctcaccgtcgtcgtccttggcaccacaggagcagtccaccgtccagttctccaagccc 409 ||||| || || ||||||||||| ||||||| |||||| ||||||||||||||||| ||| Sbjct: 45859 ctctcgccatcatcgtccttggctccacaggtgcagtcgaccgtccagttctccaacccc 45800 Query: 410 ctctccatcctgaactgcacaattctcctgttatccccagtgcaccgtcctctcacccta 469 || ||||||||||| ||||||||||| | ||||||||||||||||| |||||| ||||| Sbjct: 45799 ctttccatcctgaattgcacaattcttcggttatccccagtgcaccttcctcttaccctc 45740 Query: 470 acaagctggctcgagtcaagcacgtgcttcacagggcttgtgtcact 516 || |||||||| ||| ||||||| |||||||| || |||||||||| Sbjct: 45739 acgagctggcttgagccaagcacatgcttcacgagggttgtgtcact 45693 Score = 145 bits (73), Expect = 2e-31 Identities = 104/113 (92%), Gaps = 1/113 (0%) Strand = Plus / Minus Query: 70 ctcagtatttacatttcactacattatgtacagtcacccaacagttgctaggcgcccaat 129 ||||||||||||||||||| |||||||||||||||| ||||||||||| | |||||||| Sbjct: 46141 ctcagtatttacatttcac-acattatgtacagtcatccaacagttgccatgcgcccaaa 46083 Query: 130 tttgcccgcaccgccaacagaagatcctatctcatccttgcatctcccggcag 182 |||||| |||||||||||||| |||||||||||||||||||| ||||| |||| Sbjct: 46082 tttgcctgcaccgccaacagatgatcctatctcatccttgcacctccctgcag 46030
>dbj|AK101067.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033023G11, full insert sequence Length = 2381 Score = 252 bits (127), Expect = 1e-63 Identities = 247/287 (86%) Strand = Plus / Minus Query: 230 tttcctttgcgtggactggcacactttctgcatatgaatttttcagggacttcttcaaaa 289 |||||| |||||||||| |||||||| ||||| ||||| || |||||||| || |||||| Sbjct: 2111 tttcctctgcgtggactagcacacttcctgcagatgaacttctcagggacatcatcaaaa 2052 Query: 290 tcactgatccctgagcatcttgtgtgctgccacactccacacgcatcacacgccatcatc 349 ||||| |||||||| || || ||||| ||||| |||||||| ||||||| || | |||| Sbjct: 2051 tcactaatccctgaacacctggtgtgttgccaaactccacaaacatcacatgcaagcatc 1992 Query: 350 ctctcaccgtcgtcgtccttggcaccacaggagcagtccaccgtccagttctccaagccc 409 ||||| || || ||||||||||| ||||||| |||||| ||||||||||||||||| ||| Sbjct: 1991 ctctcgccatcatcgtccttggctccacaggtgcagtcgaccgtccagttctccaacccc 1932 Query: 410 ctctccatcctgaactgcacaattctcctgttatccccagtgcaccgtcctctcacccta 469 || ||||||||||| ||||||||||| | ||||||||||||||||| |||||| ||||| Sbjct: 1931 ctttccatcctgaattgcacaattcttcggttatccccagtgcaccttcctcttaccctc 1872 Query: 470 acaagctggctcgagtcaagcacgtgcttcacagggcttgtgtcact 516 || |||||||| ||| ||||||| |||||||| || |||||||||| Sbjct: 1871 acgagctggcttgagccaagcacatgcttcacgagggttgtgtcact 1825 Score = 145 bits (73), Expect = 2e-31 Identities = 104/113 (92%), Gaps = 1/113 (0%) Strand = Plus / Minus Query: 70 ctcagtatttacatttcactacattatgtacagtcacccaacagttgctaggcgcccaat 129 ||||||||||||||||||| |||||||||||||||| ||||||||||| | |||||||| Sbjct: 2273 ctcagtatttacatttcac-acattatgtacagtcatccaacagttgccatgcgcccaaa 2215 Query: 130 tttgcccgcaccgccaacagaagatcctatctcatccttgcatctcccggcag 182 |||||| |||||||||||||| |||||||||||||||||||| ||||| |||| Sbjct: 2214 tttgcctgcaccgccaacagatgatcctatctcatccttgcacctccctgcag 2162
>dbj|AK069864.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023037P13, full insert sequence Length = 3515 Score = 252 bits (127), Expect = 1e-63 Identities = 247/287 (86%) Strand = Plus / Plus Query: 230 tttcctttgcgtggactggcacactttctgcatatgaatttttcagggacttcttcaaaa 289 |||||| |||||||||| |||||||| ||||| ||||| || |||||||| || |||||| Sbjct: 1123 tttcctctgcgtggactagcacacttcctgcagatgaacttctcagggacatcatcaaaa 1182 Query: 290 tcactgatccctgagcatcttgtgtgctgccacactccacacgcatcacacgccatcatc 349 ||||| |||||||| || || ||||| ||||| |||||||| ||||||| || | |||| Sbjct: 1183 tcactaatccctgaacacctggtgtgttgccaaactccacaaacatcacatgcaagcatc 1242 Query: 350 ctctcaccgtcgtcgtccttggcaccacaggagcagtccaccgtccagttctccaagccc 409 ||||| || || ||||||||||| ||||||| |||||| ||||||||||||||||| ||| Sbjct: 1243 ctctcgccatcatcgtccttggctccacaggtgcagtcgaccgtccagttctccaacccc 1302 Query: 410 ctctccatcctgaactgcacaattctcctgttatccccagtgcaccgtcctctcacccta 469 || ||||||||||| ||||||||||| | ||||||||||||||||| |||||| ||||| Sbjct: 1303 ctttccatcctgaattgcacaattcttcggttatccccagtgcaccttcctcttaccctc 1362 Query: 470 acaagctggctcgagtcaagcacgtgcttcacagggcttgtgtcact 516 || |||||||| ||| ||||||| |||||||| || |||||||||| Sbjct: 1363 acgagctggcttgagccaagcacatgcttcacgagggttgtgtcact 1409 Score = 145 bits (73), Expect = 2e-31 Identities = 104/113 (92%), Gaps = 1/113 (0%) Strand = Plus / Plus Query: 70 ctcagtatttacatttcactacattatgtacagtcacccaacagttgctaggcgcccaat 129 ||||||||||||||||||| |||||||||||||||| ||||||||||| | |||||||| Sbjct: 961 ctcagtatttacatttcac-acattatgtacagtcatccaacagttgccatgcgcccaaa 1019 Query: 130 tttgcccgcaccgccaacagaagatcctatctcatccttgcatctcccggcag 182 |||||| |||||||||||||| |||||||||||||||||||| ||||| |||| Sbjct: 1020 tttgcctgcaccgccaacagatgatcctatctcatccttgcacctccctgcag 1072
>dbj|AK064177.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-104-A12, full insert sequence Length = 1936 Score = 252 bits (127), Expect = 1e-63 Identities = 247/287 (86%) Strand = Plus / Minus Query: 230 tttcctttgcgtggactggcacactttctgcatatgaatttttcagggacttcttcaaaa 289 |||||| |||||||||| |||||||| ||||| ||||| || |||||||| || |||||| Sbjct: 1142 tttcctctgcgtggactagcacacttcctgcagatgaacttctcagggacatcatcaaaa 1083 Query: 290 tcactgatccctgagcatcttgtgtgctgccacactccacacgcatcacacgccatcatc 349 ||||| |||||||| || || ||||| ||||| |||||||| ||||||| || | |||| Sbjct: 1082 tcactaatccctgaacacctggtgtgttgccaaactccacaaacatcacatgcaagcatc 1023 Query: 350 ctctcaccgtcgtcgtccttggcaccacaggagcagtccaccgtccagttctccaagccc 409 ||||| || || ||||||||||| ||||||| |||||| ||||||||||||||||| ||| Sbjct: 1022 ctctcgccatcatcgtccttggctccacaggtgcagtcgaccgtccagttctccaacccc 963 Query: 410 ctctccatcctgaactgcacaattctcctgttatccccagtgcaccgtcctctcacccta 469 || ||||||||||| ||||||||||| | ||||||||||||||||| |||||| ||||| Sbjct: 962 ctttccatcctgaattgcacaattcttcggttatccccagtgcaccttcctcttaccctc 903 Query: 470 acaagctggctcgagtcaagcacgtgcttcacagggcttgtgtcact 516 || |||||||| ||| ||||||| |||||||| || |||||||||| Sbjct: 902 acgagctggcttgagccaagcacatgcttcacgagggttgtgtcact 856 Score = 145 bits (73), Expect = 2e-31 Identities = 104/113 (92%), Gaps = 1/113 (0%) Strand = Plus / Minus Query: 70 ctcagtatttacatttcactacattatgtacagtcacccaacagttgctaggcgcccaat 129 ||||||||||||||||||| |||||||||||||||| ||||||||||| | |||||||| Sbjct: 1304 ctcagtatttacatttcac-acattatgtacagtcatccaacagttgccatgcgcccaaa 1246 Query: 130 tttgcccgcaccgccaacagaagatcctatctcatccttgcatctcccggcag 182 |||||| |||||||||||||| |||||||||||||||||||| ||||| |||| Sbjct: 1245 tttgcctgcaccgccaacagatgatcctatctcatccttgcacctccctgcag 1193
>dbj|AK058582.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-F10, full insert sequence Length = 1412 Score = 252 bits (127), Expect = 1e-63 Identities = 247/287 (86%) Strand = Plus / Minus Query: 230 tttcctttgcgtggactggcacactttctgcatatgaatttttcagggacttcttcaaaa 289 |||||| |||||||||| |||||||| ||||| ||||| || |||||||| || |||||| Sbjct: 1153 tttcctctgcgtggactagcacacttcctgcagatgaacttctcagggacatcatcaaaa 1094 Query: 290 tcactgatccctgagcatcttgtgtgctgccacactccacacgcatcacacgccatcatc 349 ||||| |||||||| || || ||||| ||||| |||||||| ||||||| || | |||| Sbjct: 1093 tcactaatccctgaacacctggtgtgttgccaaactccacaaacatcacatgcaagcatc 1034 Query: 350 ctctcaccgtcgtcgtccttggcaccacaggagcagtccaccgtccagttctccaagccc 409 ||||| || || ||||||||||| ||||||| |||||| ||||||||||||||||| ||| Sbjct: 1033 ctctcgccatcatcgtccttggctccacaggtgcagtcgaccgtccagttctccaacccc 974 Query: 410 ctctccatcctgaactgcacaattctcctgttatccccagtgcaccgtcctctcacccta 469 || ||||||||||| ||||||||||| | ||||||||||||||||| |||||| ||||| Sbjct: 973 ctttccatcctgaattgcacaattcttcggttatccccagtgcaccttcctcttaccctc 914 Query: 470 acaagctggctcgagtcaagcacgtgcttcacagggcttgtgtcact 516 || |||||||| ||| ||||||| |||||||| || |||||||||| Sbjct: 913 acgagctggcttgagccaagcacatgcttcacgagggttgtgtcact 867 Score = 137 bits (69), Expect = 4e-29 Identities = 103/113 (91%), Gaps = 1/113 (0%) Strand = Plus / Minus Query: 70 ctcagtatttacatttcactacattatgtacagtcacccaacagttgctaggcgcccaat 129 ||||||||||||||||||| |||||||||||||||| ||||||||| | | |||||||| Sbjct: 1315 ctcagtatttacatttcac-acattatgtacagtcatccaacagttaccatgcgcccaaa 1257 Query: 130 tttgcccgcaccgccaacagaagatcctatctcatccttgcatctcccggcag 182 |||||| |||||||||||||| |||||||||||||||||||| ||||| |||| Sbjct: 1256 tttgcctgcaccgccaacagatgatcctatctcatccttgcacctccctgcag 1204
>gb|AY105762.1| Zea mays PCO112365 mRNA sequence Length = 460 Score = 141 bits (71), Expect = 3e-30 Identities = 151/178 (84%) Strand = Plus / Minus Query: 236 ttgcgtggactggcacactttctgcatatgaatttttcagggacttcttcaaaatcactg 295 ||||||||||| |||||||||||||| ||||| |||||||||||||| | ||||||||| Sbjct: 178 ttgcgtggactagcacactttctgcagatgaaattttcagggacttcctnaaaatcactt 119 Query: 296 atccctgagcatcttgtgtgctgccacactccacacgcatcacacgccatcatcctctca 355 ||||| ||||| || || |||||||| |||||||| ||||| || | ||||| || Sbjct: 118 atcccagagcacctggtatgctgccagactccacatatgtcacaagctagcatccgttcc 59 Query: 356 ccgtcgtcgtccttggcaccacaggagcagtccaccgtccagttctccaagcccctct 413 || || || |||||||| ||||| |||||||||||||||||||||||||| ||||||| Sbjct: 58 ccatcatcatccttggccccacatgagcagtccaccgtccagttctccaaacccctct 1 Score = 79.8 bits (40), Expect = 8e-12 Identities = 91/108 (84%) Strand = Plus / Minus Query: 70 ctcagtatttacatttcactacattatgtacagtcacccaacagttgctaggcgcccaat 129 |||| ||||||| ||||||||||||||||||||||| ||||| ||||| | ||||||| Sbjct: 347 ctcactatttacgtttcactacattatgtacagtcatccaactgttgccatgcgcccata 288 Query: 130 tttgcccgcaccgccaacagaagatcctatctcatccttgcatctccc 177 ||||| || || ||||| || | ||| |||||||||||||| ||||| Sbjct: 287 cttgcctgctccaccaactgatgctccaatctcatccttgcacctccc 240
>gb|AC146524.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0055H15, complete sequence Length = 28312 Score = 44.1 bits (22), Expect = 0.46 Identities = 58/70 (82%) Strand = Plus / Plus Query: 350 ctctcaccgtcgtcgtccttggcaccacaggagcagtccaccgtccagttctccaagccc 409 ||||||||||| |||||| | || ||||||||||| | || ||||| || |||| ||| Sbjct: 16744 ctctcaccgtcatcgtccgttgctccacaggagcatttaactgtccatttgtccacaccc 16803 Query: 410 ctctccatcc 419 |||||||||| Sbjct: 16804 ctctccatcc 16813
>gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0097K08 map C827S, complete sequence Length = 137870 Score = 44.1 bits (22), Expect = 0.46 Identities = 58/70 (82%) Strand = Plus / Minus Query: 350 ctctcaccgtcgtcgtccttggcaccacaggagcagtccaccgtccagttctccaagccc 409 ||||||||||| |||||| | || ||||||||||| | || ||||| || |||| ||| Sbjct: 134898 ctctcaccgtcatcgtccgttgctccacaggagcatttaactgtccatttgtccacaccc 134839 Query: 410 ctctccatcc 419 |||||||||| Sbjct: 134838 ctctccatcc 134829
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.46 Identities = 58/70 (82%) Strand = Plus / Plus Query: 350 ctctcaccgtcgtcgtccttggcaccacaggagcagtccaccgtccagttctccaagccc 409 ||||||||||| |||||| | || ||||||||||| | || ||||| || |||| ||| Sbjct: 7047657 ctctcaccgtcatcgtccgttgctccacaggagcatttaactgtccatttgtccacaccc 7047716 Query: 410 ctctccatcc 419 |||||||||| Sbjct: 7047717 ctctccatcc 7047726
>dbj|AK105440.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-H10, full insert sequence Length = 2323 Score = 44.1 bits (22), Expect = 0.46 Identities = 58/70 (82%) Strand = Plus / Minus Query: 350 ctctcaccgtcgtcgtccttggcaccacaggagcagtccaccgtccagttctccaagccc 409 ||||||||||| |||||| | || ||||||||||| | || ||||| || |||| ||| Sbjct: 1964 ctctcaccgtcatcgtccgttgctccacaggagcatttaactgtccatttgtccacaccc 1905 Query: 410 ctctccatcc 419 |||||||||| Sbjct: 1904 ctctccatcc 1895
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.46 Identities = 58/70 (82%) Strand = Plus / Plus Query: 350 ctctcaccgtcgtcgtccttggcaccacaggagcagtccaccgtccagttctccaagccc 409 ||||||||||| |||||| | || ||||||||||| | || ||||| || |||| ||| Sbjct: 7113628 ctctcaccgtcatcgtccgttgctccacaggagcatttaactgtccatttgtccacaccc 7113687 Query: 410 ctctccatcc 419 |||||||||| Sbjct: 7113688 ctctccatcc 7113697
>gb|AE016827.1| Mannheimia succiniciproducens MBEL55E, complete genome Length = 2314078 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 131 ttgcccgcaccgccaacagaa 151 ||||||||||||||||||||| Sbjct: 1951865 ttgcccgcaccgccaacagaa 1951885
>ref|XM_364333.1| Magnaporthe grisea 70-15 hypothetical protein (MG09178.4) partial mRNA Length = 1134 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 406 gcccctctccatcctgaactgcaca 430 |||||||||||| |||||||||||| Sbjct: 342 gcccctctccatgctgaactgcaca 318
>gb|AC107369.9| Mus musculus chromosome 15, clone RP23-368M2, complete sequence Length = 216082 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 gaagattccattaaccacttg 32 ||||||||||||||||||||| Sbjct: 68085 gaagattccattaaccacttg 68065
>emb|AL139123.15| Human DNA sequence from clone RP11-500G10 on chromosome 10 Contains three novel genes, a peptidylprolyl isomerase A (cyclophilin A) (PPIA) pseudogene, a meningioma expressed antigen 6 (MGEA6) pseudogene, a novel protein similar thioredoxin-like 2 (TXNL2) and four CpG islands, complete sequence Length = 209527 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 369 tggcaccacaggagcagtccaccgt 393 ||||||||||||||||| ||||||| Sbjct: 162962 tggcaccacaggagcagcccaccgt 162986
>gb|AC133283.13| Mus musculus chromosome 15, clone RP24-435N1, complete sequence Length = 154352 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 12 gaagattccattaaccacttg 32 ||||||||||||||||||||| Sbjct: 30618 gaagattccattaaccacttg 30638
>emb|CR962122.2| Medicago truncatula chromosome 5 clone mte1-46l20, COMPLETE SEQUENCE Length = 150486 Score = 42.1 bits (21), Expect = 1.8 Identities = 45/53 (84%) Strand = Plus / Plus Query: 305 catcttgtgtgctgccacactccacacgcatcacacgccatcatcctctcacc 357 |||||||| |||||||||||| |||| |||||| |||| ||| |||||||| Sbjct: 27729 catcttgtatgctgccacacttcacaaatatcacaagccaccattctctcacc 27781
>gb|AC133933.4| Mus musculus BAC clone RP24-333C16 from chromosome 18, complete sequence Length = 219699 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 tctgcatatgaatttttcag 275 |||||||||||||||||||| Sbjct: 174972 tctgcatatgaatttttcag 174953
>gb|AC125077.4| Mus musculus BAC clone RP23-473K6 from chromosome 6, complete sequence Length = 184783 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 tttctgcatatgaatttttc 273 |||||||||||||||||||| Sbjct: 127210 tttctgcatatgaatttttc 127191
>emb|AL513490.7| Human DNA sequence from clone CTD-2063G10 on chromosome X, complete sequence Length = 14674 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 catatgaatttttcagggac 279 |||||||||||||||||||| Sbjct: 3345 catatgaatttttcagggac 3364
>emb|AL158812.10| Human DNA sequence from clone RP11-157E11 on chromosome 13, complete sequence Length = 173538 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 ctggcacactttctgcatat 264 |||||||||||||||||||| Sbjct: 96772 ctggcacactttctgcatat 96791
>emb|AL157759.16| Human DNA sequence from clone RP11-107L16 on chromosome 13, complete sequence Length = 83552 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 catatgaatttttcagggac 279 |||||||||||||||||||| Sbjct: 53524 catatgaatttttcagggac 53505
>gb|AC068295.15| Homo sapiens 3 BAC RP11-44H4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 170867 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 catatgaatttttcagggac 279 |||||||||||||||||||| Sbjct: 22409 catatgaatttttcagggac 22390
>emb|AL033525.10|HS1108H3 Human DNA sequence from clone RP5-1108H3 on chromosome 1p35.1-36.31 Contains ESTs, STSs, GSSs and an ata repeat polymorphism, complete sequence Length = 164901 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 catatgaatttttcagggac 279 |||||||||||||||||||| Sbjct: 122756 catatgaatttttcagggac 122775
>gb|AC163342.2| Mus musculus BAC clone RP24-115M13 from chromosome 9, complete sequence Length = 204620 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 tgtgtgctgccacactccac 329 |||||||||||||||||||| Sbjct: 179180 tgtgtgctgccacactccac 179161
>gb|AC104628.6| Drosophila melanogaster X BAC RP98-18C18 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 187772 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 245 ctggcacactttctgcatatgaat 268 |||||||||||||||| ||||||| Sbjct: 89282 ctggcacactttctgcgtatgaat 89305
>gb|AC010034.7| Drosophila melanogaster 3L BAC RP98-4A21 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 154234 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 385 gtccaccgtccagttctcca 404 |||||||||||||||||||| Sbjct: 95719 gtccaccgtccagttctcca 95738
>ref|NM_143808.2| Drosophila melanogaster CG5707-RA (CG5707), mRNA Length = 1494 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 385 gtccaccgtccagttctcca 404 |||||||||||||||||||| Sbjct: 1165 gtccaccgtccagttctcca 1146
>gb|AY058274.1| Drosophila melanogaster GH02816 full length cDNA Length = 1482 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 385 gtccaccgtccagttctcca 404 |||||||||||||||||||| Sbjct: 1143 gtccaccgtccagttctcca 1124
>gb|AC026188.6| Homo sapiens chromosome 3 clone RP11-319I18 map 3p, complete sequence Length = 177721 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 catatgaatttttcagggac 279 |||||||||||||||||||| Sbjct: 98912 catatgaatttttcagggac 98931
>gb|AC154703.2| Mus musculus BAC clone RP24-349H1 from chromosome 14, complete sequence Length = 154588 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 attccattaaccacttgaag 35 |||||||||||||||||||| Sbjct: 21961 attccattaaccacttgaag 21980
>gb|AY935574.1| Trypanosoma brucei variant surface glycoprotein MITat 1.8 (MITat 1.8) mRNA, complete cds Length = 1558 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 acttcttcaaaatcactgat 297 |||||||||||||||||||| Sbjct: 1129 acttcttcaaaatcactgat 1148
>gb|AE003474.4| Drosophila melanogaster chromosome 3L, section 8 of 83 of the complete sequence Length = 312072 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 385 gtccaccgtccagttctcca 404 |||||||||||||||||||| Sbjct: 36610 gtccaccgtccagttctcca 36629
>gb|AE003437.3| Drosophila melanogaster chromosome X, section 21 of 74 of the complete sequence Length = 305376 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 245 ctggcacactttctgcatatgaat 268 |||||||||||||||| ||||||| Sbjct: 201278 ctggcacactttctgcgtatgaat 201301
>dbj|AP000860.4| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-3I4, complete sequence Length = 103857 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 caagcccctctccatcctga 422 |||||||||||||||||||| Sbjct: 103530 caagcccctctccatcctga 103549
>dbj|AP002993.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-456I15, complete sequences Length = 154839 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 caagcccctctccatcctga 422 |||||||||||||||||||| Sbjct: 59113 caagcccctctccatcctga 59132 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,324,896 Number of Sequences: 3902068 Number of extensions: 4324896 Number of successful extensions: 77252 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77126 Number of HSP's gapped (non-prelim): 120 length of query: 526 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 503 effective length of database: 17,143,297,704 effective search space: 8623078745112 effective search space used: 8623078745112 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)