ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart32a02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_190132.1| Oryza sativa (japonica cultivar-group), predic... 252 1e-63
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 252 1e-63
3dbj|AP003261.3| Oryza sativa (japonica cultivar-group) genomic D... 252 1e-63
4dbj|AK101067.1| Oryza sativa (japonica cultivar-group) cDNA clon... 252 1e-63
5dbj|AK069864.1| Oryza sativa (japonica cultivar-group) cDNA clon... 252 1e-63
6dbj|AK064177.1| Oryza sativa (japonica cultivar-group) cDNA clon... 252 1e-63
7dbj|AK058582.1| Oryza sativa (japonica cultivar-group) cDNA clon... 252 1e-63
8gb|AY105762.1| Zea mays PCO112365 mRNA sequence 141 3e-30
9gb|AC146524.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.46
10gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.46
11dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.46
12dbj|AK105440.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.46
13gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.46
14gb|AE016827.1| Mannheimia succiniciproducens MBEL55E, complete g... 42 1.8
15ref|XM_364333.1| Magnaporthe grisea 70-15 hypothetical protein (... 42 1.8
16gb|AC107369.9| Mus musculus chromosome 15, clone RP23-368M2, com... 42 1.8
17emb|AL139123.15| Human DNA sequence from clone RP11-500G10 on ch... 42 1.8
18gb|AC133283.13| Mus musculus chromosome 15, clone RP24-435N1, co... 42 1.8
19emb|CR962122.2| Medicago truncatula chromosome 5 clone mte1-46l2... 42 1.8
20gb|AC133933.4| Mus musculus BAC clone RP24-333C16 from chromosom... 40 7.1
21gb|AC125077.4| Mus musculus BAC clone RP23-473K6 from chromosome... 40 7.1
22emb|AL513490.7| Human DNA sequence from clone CTD-2063G10 on chr... 40 7.1
23emb|AL158812.10| Human DNA sequence from clone RP11-157E11 on ch... 40 7.1
24emb|AL157759.16| Human DNA sequence from clone RP11-107L16 on ch... 40 7.1
25gb|AC068295.15| Homo sapiens 3 BAC RP11-44H4 (Roswell Park Cance... 40 7.1
26emb|AL033525.10|HS1108H3 Human DNA sequence from clone RP5-1108H... 40 7.1
27gb|AC163342.2| Mus musculus BAC clone RP24-115M13 from chromosom... 40 7.1
28gb|AC104628.6| Drosophila melanogaster X BAC RP98-18C18 (Roswell... 40 7.1
29gb|AC010034.7| Drosophila melanogaster 3L BAC RP98-4A21 (Roswell... 40 7.1
30ref|NM_143808.2| Drosophila melanogaster CG5707-RA (CG5707), mRNA 40 7.1
31gb|AY058274.1| Drosophila melanogaster GH02816 full length cDNA 40 7.1
32gb|AC026188.6| Homo sapiens chromosome 3 clone RP11-319I18 map 3... 40 7.1
33gb|AC154703.2| Mus musculus BAC clone RP24-349H1 from chromosome... 40 7.1
34gb|AY935574.1| Trypanosoma brucei variant surface glycoprotein M... 40 7.1
35gb|AE003474.4| Drosophila melanogaster chromosome 3L, section 8 ... 40 7.1
36gb|AE003437.3| Drosophila melanogaster chromosome X, section 21 ... 40 7.1
37dbj|AP000860.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 7.1
38dbj|AP002993.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 7.1

>ref|NM_190132.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2151

 Score =  252 bits (127), Expect = 1e-63
 Identities = 247/287 (86%)
 Strand = Plus / Minus

                                                                        
Query: 230  tttcctttgcgtggactggcacactttctgcatatgaatttttcagggacttcttcaaaa 289
            |||||| |||||||||| |||||||| ||||| ||||| || |||||||| || ||||||
Sbjct: 2021 tttcctctgcgtggactagcacacttcctgcagatgaacttctcagggacatcatcaaaa 1962

                                                                        
Query: 290  tcactgatccctgagcatcttgtgtgctgccacactccacacgcatcacacgccatcatc 349
            ||||| |||||||| || || ||||| ||||| ||||||||  ||||||| || | ||||
Sbjct: 1961 tcactaatccctgaacacctggtgtgttgccaaactccacaaacatcacatgcaagcatc 1902

                                                                        
Query: 350  ctctcaccgtcgtcgtccttggcaccacaggagcagtccaccgtccagttctccaagccc 409
            ||||| || || ||||||||||| ||||||| |||||| ||||||||||||||||| |||
Sbjct: 1901 ctctcgccatcatcgtccttggctccacaggtgcagtcgaccgtccagttctccaacccc 1842

                                                                        
Query: 410  ctctccatcctgaactgcacaattctcctgttatccccagtgcaccgtcctctcacccta 469
            || ||||||||||| ||||||||||| | ||||||||||||||||| |||||| ||||| 
Sbjct: 1841 ctttccatcctgaattgcacaattcttcggttatccccagtgcaccttcctcttaccctc 1782

                                                           
Query: 470  acaagctggctcgagtcaagcacgtgcttcacagggcttgtgtcact 516
            || |||||||| ||| ||||||| ||||||||  || ||||||||||
Sbjct: 1781 acgagctggcttgagccaagcacatgcttcacgagggttgtgtcact 1735



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 69/76 (90%)
 Strand = Plus / Minus

                                                                        
Query: 107  ccaacagttgctaggcgcccaattttgcccgcaccgccaacagaagatcctatctcatcc 166
            ||||||||||| | |||||||| |||||| |||||||||||||| |||||||||||||||
Sbjct: 2147 ccaacagttgccatgcgcccaaatttgcctgcaccgccaacagatgatcctatctcatcc 2088

                            
Query: 167  ttgcatctcccggcag 182
            ||||| ||||| ||||
Sbjct: 2087 ttgcacctccctgcag 2072



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  252 bits (127), Expect = 1e-63
 Identities = 247/287 (86%)
 Strand = Plus / Minus

                                                                            
Query: 230      tttcctttgcgtggactggcacactttctgcatatgaatttttcagggacttcttcaaaa 289
                |||||| |||||||||| |||||||| ||||| ||||| || |||||||| || ||||||
Sbjct: 38077945 tttcctctgcgtggactagcacacttcctgcagatgaacttctcagggacatcatcaaaa 38077886

                                                                            
Query: 290      tcactgatccctgagcatcttgtgtgctgccacactccacacgcatcacacgccatcatc 349
                ||||| |||||||| || || ||||| ||||| ||||||||  ||||||| || | ||||
Sbjct: 38077885 tcactaatccctgaacacctggtgtgttgccaaactccacaaacatcacatgcaagcatc 38077826

                                                                            
Query: 350      ctctcaccgtcgtcgtccttggcaccacaggagcagtccaccgtccagttctccaagccc 409
                ||||| || || ||||||||||| ||||||| |||||| ||||||||||||||||| |||
Sbjct: 38077825 ctctcgccatcatcgtccttggctccacaggtgcagtcgaccgtccagttctccaacccc 38077766

                                                                            
Query: 410      ctctccatcctgaactgcacaattctcctgttatccccagtgcaccgtcctctcacccta 469
                || ||||||||||| ||||||||||| | ||||||||||||||||| |||||| ||||| 
Sbjct: 38077765 ctttccatcctgaattgcacaattcttcggttatccccagtgcaccttcctcttaccctc 38077706

                                                               
Query: 470      acaagctggctcgagtcaagcacgtgcttcacagggcttgtgtcact 516
                || |||||||| ||| ||||||| ||||||||  || ||||||||||
Sbjct: 38077705 acgagctggcttgagccaagcacatgcttcacgagggttgtgtcact 38077659



 Score =  145 bits (73), Expect = 2e-31
 Identities = 104/113 (92%), Gaps = 1/113 (0%)
 Strand = Plus / Minus

                                                                            
Query: 70       ctcagtatttacatttcactacattatgtacagtcacccaacagttgctaggcgcccaat 129
                ||||||||||||||||||| |||||||||||||||| ||||||||||| | |||||||| 
Sbjct: 38078107 ctcagtatttacatttcac-acattatgtacagtcatccaacagttgccatgcgcccaaa 38078049

                                                                     
Query: 130      tttgcccgcaccgccaacagaagatcctatctcatccttgcatctcccggcag 182
                |||||| |||||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct: 38078048 tttgcctgcaccgccaacagatgatcctatctcatccttgcacctccctgcag 38077996



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>dbj|AP003261.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0471B04
          Length = 138025

 Score =  252 bits (127), Expect = 1e-63
 Identities = 247/287 (86%)
 Strand = Plus / Minus

                                                                         
Query: 230   tttcctttgcgtggactggcacactttctgcatatgaatttttcagggacttcttcaaaa 289
             |||||| |||||||||| |||||||| ||||| ||||| || |||||||| || ||||||
Sbjct: 45979 tttcctctgcgtggactagcacacttcctgcagatgaacttctcagggacatcatcaaaa 45920

                                                                         
Query: 290   tcactgatccctgagcatcttgtgtgctgccacactccacacgcatcacacgccatcatc 349
             ||||| |||||||| || || ||||| ||||| ||||||||  ||||||| || | ||||
Sbjct: 45919 tcactaatccctgaacacctggtgtgttgccaaactccacaaacatcacatgcaagcatc 45860

                                                                         
Query: 350   ctctcaccgtcgtcgtccttggcaccacaggagcagtccaccgtccagttctccaagccc 409
             ||||| || || ||||||||||| ||||||| |||||| ||||||||||||||||| |||
Sbjct: 45859 ctctcgccatcatcgtccttggctccacaggtgcagtcgaccgtccagttctccaacccc 45800

                                                                         
Query: 410   ctctccatcctgaactgcacaattctcctgttatccccagtgcaccgtcctctcacccta 469
             || ||||||||||| ||||||||||| | ||||||||||||||||| |||||| ||||| 
Sbjct: 45799 ctttccatcctgaattgcacaattcttcggttatccccagtgcaccttcctcttaccctc 45740

                                                            
Query: 470   acaagctggctcgagtcaagcacgtgcttcacagggcttgtgtcact 516
             || |||||||| ||| ||||||| ||||||||  || ||||||||||
Sbjct: 45739 acgagctggcttgagccaagcacatgcttcacgagggttgtgtcact 45693



 Score =  145 bits (73), Expect = 2e-31
 Identities = 104/113 (92%), Gaps = 1/113 (0%)
 Strand = Plus / Minus

                                                                         
Query: 70    ctcagtatttacatttcactacattatgtacagtcacccaacagttgctaggcgcccaat 129
             ||||||||||||||||||| |||||||||||||||| ||||||||||| | |||||||| 
Sbjct: 46141 ctcagtatttacatttcac-acattatgtacagtcatccaacagttgccatgcgcccaaa 46083

                                                                  
Query: 130   tttgcccgcaccgccaacagaagatcctatctcatccttgcatctcccggcag 182
             |||||| |||||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct: 46082 tttgcctgcaccgccaacagatgatcctatctcatccttgcacctccctgcag 46030



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>dbj|AK101067.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033023G11, full
            insert sequence
          Length = 2381

 Score =  252 bits (127), Expect = 1e-63
 Identities = 247/287 (86%)
 Strand = Plus / Minus

                                                                        
Query: 230  tttcctttgcgtggactggcacactttctgcatatgaatttttcagggacttcttcaaaa 289
            |||||| |||||||||| |||||||| ||||| ||||| || |||||||| || ||||||
Sbjct: 2111 tttcctctgcgtggactagcacacttcctgcagatgaacttctcagggacatcatcaaaa 2052

                                                                        
Query: 290  tcactgatccctgagcatcttgtgtgctgccacactccacacgcatcacacgccatcatc 349
            ||||| |||||||| || || ||||| ||||| ||||||||  ||||||| || | ||||
Sbjct: 2051 tcactaatccctgaacacctggtgtgttgccaaactccacaaacatcacatgcaagcatc 1992

                                                                        
Query: 350  ctctcaccgtcgtcgtccttggcaccacaggagcagtccaccgtccagttctccaagccc 409
            ||||| || || ||||||||||| ||||||| |||||| ||||||||||||||||| |||
Sbjct: 1991 ctctcgccatcatcgtccttggctccacaggtgcagtcgaccgtccagttctccaacccc 1932

                                                                        
Query: 410  ctctccatcctgaactgcacaattctcctgttatccccagtgcaccgtcctctcacccta 469
            || ||||||||||| ||||||||||| | ||||||||||||||||| |||||| ||||| 
Sbjct: 1931 ctttccatcctgaattgcacaattcttcggttatccccagtgcaccttcctcttaccctc 1872

                                                           
Query: 470  acaagctggctcgagtcaagcacgtgcttcacagggcttgtgtcact 516
            || |||||||| ||| ||||||| ||||||||  || ||||||||||
Sbjct: 1871 acgagctggcttgagccaagcacatgcttcacgagggttgtgtcact 1825



 Score =  145 bits (73), Expect = 2e-31
 Identities = 104/113 (92%), Gaps = 1/113 (0%)
 Strand = Plus / Minus

                                                                        
Query: 70   ctcagtatttacatttcactacattatgtacagtcacccaacagttgctaggcgcccaat 129
            ||||||||||||||||||| |||||||||||||||| ||||||||||| | |||||||| 
Sbjct: 2273 ctcagtatttacatttcac-acattatgtacagtcatccaacagttgccatgcgcccaaa 2215

                                                                 
Query: 130  tttgcccgcaccgccaacagaagatcctatctcatccttgcatctcccggcag 182
            |||||| |||||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct: 2214 tttgcctgcaccgccaacagatgatcctatctcatccttgcacctccctgcag 2162



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>dbj|AK069864.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023037P13, full
            insert sequence
          Length = 3515

 Score =  252 bits (127), Expect = 1e-63
 Identities = 247/287 (86%)
 Strand = Plus / Plus

                                                                        
Query: 230  tttcctttgcgtggactggcacactttctgcatatgaatttttcagggacttcttcaaaa 289
            |||||| |||||||||| |||||||| ||||| ||||| || |||||||| || ||||||
Sbjct: 1123 tttcctctgcgtggactagcacacttcctgcagatgaacttctcagggacatcatcaaaa 1182

                                                                        
Query: 290  tcactgatccctgagcatcttgtgtgctgccacactccacacgcatcacacgccatcatc 349
            ||||| |||||||| || || ||||| ||||| ||||||||  ||||||| || | ||||
Sbjct: 1183 tcactaatccctgaacacctggtgtgttgccaaactccacaaacatcacatgcaagcatc 1242

                                                                        
Query: 350  ctctcaccgtcgtcgtccttggcaccacaggagcagtccaccgtccagttctccaagccc 409
            ||||| || || ||||||||||| ||||||| |||||| ||||||||||||||||| |||
Sbjct: 1243 ctctcgccatcatcgtccttggctccacaggtgcagtcgaccgtccagttctccaacccc 1302

                                                                        
Query: 410  ctctccatcctgaactgcacaattctcctgttatccccagtgcaccgtcctctcacccta 469
            || ||||||||||| ||||||||||| | ||||||||||||||||| |||||| ||||| 
Sbjct: 1303 ctttccatcctgaattgcacaattcttcggttatccccagtgcaccttcctcttaccctc 1362

                                                           
Query: 470  acaagctggctcgagtcaagcacgtgcttcacagggcttgtgtcact 516
            || |||||||| ||| ||||||| ||||||||  || ||||||||||
Sbjct: 1363 acgagctggcttgagccaagcacatgcttcacgagggttgtgtcact 1409



 Score =  145 bits (73), Expect = 2e-31
 Identities = 104/113 (92%), Gaps = 1/113 (0%)
 Strand = Plus / Plus

                                                                        
Query: 70   ctcagtatttacatttcactacattatgtacagtcacccaacagttgctaggcgcccaat 129
            ||||||||||||||||||| |||||||||||||||| ||||||||||| | |||||||| 
Sbjct: 961  ctcagtatttacatttcac-acattatgtacagtcatccaacagttgccatgcgcccaaa 1019

                                                                 
Query: 130  tttgcccgcaccgccaacagaagatcctatctcatccttgcatctcccggcag 182
            |||||| |||||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct: 1020 tttgcctgcaccgccaacagatgatcctatctcatccttgcacctccctgcag 1072



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>dbj|AK064177.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-104-A12, full
            insert sequence
          Length = 1936

 Score =  252 bits (127), Expect = 1e-63
 Identities = 247/287 (86%)
 Strand = Plus / Minus

                                                                        
Query: 230  tttcctttgcgtggactggcacactttctgcatatgaatttttcagggacttcttcaaaa 289
            |||||| |||||||||| |||||||| ||||| ||||| || |||||||| || ||||||
Sbjct: 1142 tttcctctgcgtggactagcacacttcctgcagatgaacttctcagggacatcatcaaaa 1083

                                                                        
Query: 290  tcactgatccctgagcatcttgtgtgctgccacactccacacgcatcacacgccatcatc 349
            ||||| |||||||| || || ||||| ||||| ||||||||  ||||||| || | ||||
Sbjct: 1082 tcactaatccctgaacacctggtgtgttgccaaactccacaaacatcacatgcaagcatc 1023

                                                                        
Query: 350  ctctcaccgtcgtcgtccttggcaccacaggagcagtccaccgtccagttctccaagccc 409
            ||||| || || ||||||||||| ||||||| |||||| ||||||||||||||||| |||
Sbjct: 1022 ctctcgccatcatcgtccttggctccacaggtgcagtcgaccgtccagttctccaacccc 963

                                                                        
Query: 410  ctctccatcctgaactgcacaattctcctgttatccccagtgcaccgtcctctcacccta 469
            || ||||||||||| ||||||||||| | ||||||||||||||||| |||||| ||||| 
Sbjct: 962  ctttccatcctgaattgcacaattcttcggttatccccagtgcaccttcctcttaccctc 903

                                                           
Query: 470  acaagctggctcgagtcaagcacgtgcttcacagggcttgtgtcact 516
            || |||||||| ||| ||||||| ||||||||  || ||||||||||
Sbjct: 902  acgagctggcttgagccaagcacatgcttcacgagggttgtgtcact 856



 Score =  145 bits (73), Expect = 2e-31
 Identities = 104/113 (92%), Gaps = 1/113 (0%)
 Strand = Plus / Minus

                                                                        
Query: 70   ctcagtatttacatttcactacattatgtacagtcacccaacagttgctaggcgcccaat 129
            ||||||||||||||||||| |||||||||||||||| ||||||||||| | |||||||| 
Sbjct: 1304 ctcagtatttacatttcac-acattatgtacagtcatccaacagttgccatgcgcccaaa 1246

                                                                 
Query: 130  tttgcccgcaccgccaacagaagatcctatctcatccttgcatctcccggcag 182
            |||||| |||||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct: 1245 tttgcctgcaccgccaacagatgatcctatctcatccttgcacctccctgcag 1193



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>dbj|AK058582.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-F10, full
            insert sequence
          Length = 1412

 Score =  252 bits (127), Expect = 1e-63
 Identities = 247/287 (86%)
 Strand = Plus / Minus

                                                                        
Query: 230  tttcctttgcgtggactggcacactttctgcatatgaatttttcagggacttcttcaaaa 289
            |||||| |||||||||| |||||||| ||||| ||||| || |||||||| || ||||||
Sbjct: 1153 tttcctctgcgtggactagcacacttcctgcagatgaacttctcagggacatcatcaaaa 1094

                                                                        
Query: 290  tcactgatccctgagcatcttgtgtgctgccacactccacacgcatcacacgccatcatc 349
            ||||| |||||||| || || ||||| ||||| ||||||||  ||||||| || | ||||
Sbjct: 1093 tcactaatccctgaacacctggtgtgttgccaaactccacaaacatcacatgcaagcatc 1034

                                                                        
Query: 350  ctctcaccgtcgtcgtccttggcaccacaggagcagtccaccgtccagttctccaagccc 409
            ||||| || || ||||||||||| ||||||| |||||| ||||||||||||||||| |||
Sbjct: 1033 ctctcgccatcatcgtccttggctccacaggtgcagtcgaccgtccagttctccaacccc 974

                                                                        
Query: 410  ctctccatcctgaactgcacaattctcctgttatccccagtgcaccgtcctctcacccta 469
            || ||||||||||| ||||||||||| | ||||||||||||||||| |||||| ||||| 
Sbjct: 973  ctttccatcctgaattgcacaattcttcggttatccccagtgcaccttcctcttaccctc 914

                                                           
Query: 470  acaagctggctcgagtcaagcacgtgcttcacagggcttgtgtcact 516
            || |||||||| ||| ||||||| ||||||||  || ||||||||||
Sbjct: 913  acgagctggcttgagccaagcacatgcttcacgagggttgtgtcact 867



 Score =  137 bits (69), Expect = 4e-29
 Identities = 103/113 (91%), Gaps = 1/113 (0%)
 Strand = Plus / Minus

                                                                        
Query: 70   ctcagtatttacatttcactacattatgtacagtcacccaacagttgctaggcgcccaat 129
            ||||||||||||||||||| |||||||||||||||| ||||||||| | | |||||||| 
Sbjct: 1315 ctcagtatttacatttcac-acattatgtacagtcatccaacagttaccatgcgcccaaa 1257

                                                                 
Query: 130  tttgcccgcaccgccaacagaagatcctatctcatccttgcatctcccggcag 182
            |||||| |||||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct: 1256 tttgcctgcaccgccaacagatgatcctatctcatccttgcacctccctgcag 1204



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>gb|AY105762.1| Zea mays PCO112365 mRNA sequence
          Length = 460

 Score =  141 bits (71), Expect = 3e-30
 Identities = 151/178 (84%)
 Strand = Plus / Minus

                                                                       
Query: 236 ttgcgtggactggcacactttctgcatatgaatttttcagggacttcttcaaaatcactg 295
           ||||||||||| |||||||||||||| ||||| |||||||||||||| | ||||||||| 
Sbjct: 178 ttgcgtggactagcacactttctgcagatgaaattttcagggacttcctnaaaatcactt 119

                                                                       
Query: 296 atccctgagcatcttgtgtgctgccacactccacacgcatcacacgccatcatcctctca 355
           ||||| ||||| || || |||||||| ||||||||    ||||| || | |||||  || 
Sbjct: 118 atcccagagcacctggtatgctgccagactccacatatgtcacaagctagcatccgttcc 59

                                                                     
Query: 356 ccgtcgtcgtccttggcaccacaggagcagtccaccgtccagttctccaagcccctct 413
           || || || |||||||| ||||| |||||||||||||||||||||||||| |||||||
Sbjct: 58  ccatcatcatccttggccccacatgagcagtccaccgtccagttctccaaacccctct 1



 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 91/108 (84%)
 Strand = Plus / Minus

                                                                       
Query: 70  ctcagtatttacatttcactacattatgtacagtcacccaacagttgctaggcgcccaat 129
           |||| ||||||| ||||||||||||||||||||||| ||||| ||||| | |||||||  
Sbjct: 347 ctcactatttacgtttcactacattatgtacagtcatccaactgttgccatgcgcccata 288

                                                           
Query: 130 tttgcccgcaccgccaacagaagatcctatctcatccttgcatctccc 177
            ||||| || || ||||| || | ||| |||||||||||||| |||||
Sbjct: 287 cttgcctgctccaccaactgatgctccaatctcatccttgcacctccc 240



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>gb|AC146524.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0055H15, complete sequence
          Length = 28312

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 58/70 (82%)
 Strand = Plus / Plus

                                                                         
Query: 350   ctctcaccgtcgtcgtccttggcaccacaggagcagtccaccgtccagttctccaagccc 409
             ||||||||||| |||||| | || ||||||||||| |  || ||||| || ||||  |||
Sbjct: 16744 ctctcaccgtcatcgtccgttgctccacaggagcatttaactgtccatttgtccacaccc 16803

                       
Query: 410   ctctccatcc 419
             ||||||||||
Sbjct: 16804 ctctccatcc 16813



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>gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0097K08
              map C827S, complete sequence
          Length = 137870

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 58/70 (82%)
 Strand = Plus / Minus

                                                                          
Query: 350    ctctcaccgtcgtcgtccttggcaccacaggagcagtccaccgtccagttctccaagccc 409
              ||||||||||| |||||| | || ||||||||||| |  || ||||| || ||||  |||
Sbjct: 134898 ctctcaccgtcatcgtccgttgctccacaggagcatttaactgtccatttgtccacaccc 134839

                        
Query: 410    ctctccatcc 419
              ||||||||||
Sbjct: 134838 ctctccatcc 134829



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 58/70 (82%)
 Strand = Plus / Plus

                                                                           
Query: 350     ctctcaccgtcgtcgtccttggcaccacaggagcagtccaccgtccagttctccaagccc 409
               ||||||||||| |||||| | || ||||||||||| |  || ||||| || ||||  |||
Sbjct: 7047657 ctctcaccgtcatcgtccgttgctccacaggagcatttaactgtccatttgtccacaccc 7047716

                         
Query: 410     ctctccatcc 419
               ||||||||||
Sbjct: 7047717 ctctccatcc 7047726



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>dbj|AK105440.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-H10, full
            insert sequence
          Length = 2323

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 58/70 (82%)
 Strand = Plus / Minus

                                                                        
Query: 350  ctctcaccgtcgtcgtccttggcaccacaggagcagtccaccgtccagttctccaagccc 409
            ||||||||||| |||||| | || ||||||||||| |  || ||||| || ||||  |||
Sbjct: 1964 ctctcaccgtcatcgtccgttgctccacaggagcatttaactgtccatttgtccacaccc 1905

                      
Query: 410  ctctccatcc 419
            ||||||||||
Sbjct: 1904 ctctccatcc 1895



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 58/70 (82%)
 Strand = Plus / Plus

                                                                           
Query: 350     ctctcaccgtcgtcgtccttggcaccacaggagcagtccaccgtccagttctccaagccc 409
               ||||||||||| |||||| | || ||||||||||| |  || ||||| || ||||  |||
Sbjct: 7113628 ctctcaccgtcatcgtccgttgctccacaggagcatttaactgtccatttgtccacaccc 7113687

                         
Query: 410     ctctccatcc 419
               ||||||||||
Sbjct: 7113688 ctctccatcc 7113697



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>gb|AE016827.1| Mannheimia succiniciproducens MBEL55E, complete genome
          Length = 2314078

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 131     ttgcccgcaccgccaacagaa 151
               |||||||||||||||||||||
Sbjct: 1951865 ttgcccgcaccgccaacagaa 1951885



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>ref|XM_364333.1| Magnaporthe grisea 70-15 hypothetical protein (MG09178.4) partial
           mRNA
          Length = 1134

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 406 gcccctctccatcctgaactgcaca 430
           |||||||||||| ||||||||||||
Sbjct: 342 gcccctctccatgctgaactgcaca 318



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>gb|AC107369.9| Mus musculus chromosome 15, clone RP23-368M2, complete sequence
          Length = 216082

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 12    gaagattccattaaccacttg 32
             |||||||||||||||||||||
Sbjct: 68085 gaagattccattaaccacttg 68065



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>emb|AL139123.15| Human DNA sequence from clone RP11-500G10 on chromosome 10 Contains three
              novel genes, a peptidylprolyl isomerase A (cyclophilin A)
              (PPIA) pseudogene, a meningioma expressed antigen 6 (MGEA6)
              pseudogene, a novel protein similar thioredoxin-like 2
              (TXNL2) and four CpG islands, complete sequence
          Length = 209527

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 369    tggcaccacaggagcagtccaccgt 393
              ||||||||||||||||| |||||||
Sbjct: 162962 tggcaccacaggagcagcccaccgt 162986



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>gb|AC133283.13| Mus musculus chromosome 15, clone RP24-435N1, complete sequence
          Length = 154352

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 12    gaagattccattaaccacttg 32
             |||||||||||||||||||||
Sbjct: 30618 gaagattccattaaccacttg 30638



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>emb|CR962122.2| Medicago truncatula chromosome 5 clone mte1-46l20, COMPLETE SEQUENCE
          Length = 150486

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                  
Query: 305   catcttgtgtgctgccacactccacacgcatcacacgccatcatcctctcacc 357
             |||||||| |||||||||||| ||||   |||||| |||| ||| ||||||||
Sbjct: 27729 catcttgtatgctgccacacttcacaaatatcacaagccaccattctctcacc 27781



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>gb|AC133933.4| Mus musculus BAC clone RP24-333C16 from chromosome 18, complete sequence
          Length = 219699

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 256    tctgcatatgaatttttcag 275
              ||||||||||||||||||||
Sbjct: 174972 tctgcatatgaatttttcag 174953



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>gb|AC125077.4| Mus musculus BAC clone RP23-473K6 from chromosome 6, complete sequence
          Length = 184783

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 254    tttctgcatatgaatttttc 273
              ||||||||||||||||||||
Sbjct: 127210 tttctgcatatgaatttttc 127191



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>emb|AL513490.7| Human DNA sequence from clone CTD-2063G10 on chromosome X, complete
            sequence
          Length = 14674

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 260  catatgaatttttcagggac 279
            ||||||||||||||||||||
Sbjct: 3345 catatgaatttttcagggac 3364



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>emb|AL158812.10| Human DNA sequence from clone RP11-157E11 on chromosome 13, complete
             sequence
          Length = 173538

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 245   ctggcacactttctgcatat 264
             ||||||||||||||||||||
Sbjct: 96772 ctggcacactttctgcatat 96791



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>emb|AL157759.16| Human DNA sequence from clone RP11-107L16 on chromosome 13, complete
             sequence
          Length = 83552

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 260   catatgaatttttcagggac 279
             ||||||||||||||||||||
Sbjct: 53524 catatgaatttttcagggac 53505



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>gb|AC068295.15| Homo sapiens 3 BAC RP11-44H4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 170867

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 260   catatgaatttttcagggac 279
             ||||||||||||||||||||
Sbjct: 22409 catatgaatttttcagggac 22390



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>emb|AL033525.10|HS1108H3 Human DNA sequence from clone RP5-1108H3 on chromosome 1p35.1-36.31
              Contains ESTs, STSs, GSSs and an ata repeat polymorphism,
              complete sequence
          Length = 164901

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 260    catatgaatttttcagggac 279
              ||||||||||||||||||||
Sbjct: 122756 catatgaatttttcagggac 122775



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>gb|AC163342.2| Mus musculus BAC clone RP24-115M13 from chromosome 9, complete sequence
          Length = 204620

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 310    tgtgtgctgccacactccac 329
              ||||||||||||||||||||
Sbjct: 179180 tgtgtgctgccacactccac 179161



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>gb|AC104628.6| Drosophila melanogaster X BAC RP98-18C18 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 187772

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 245   ctggcacactttctgcatatgaat 268
             |||||||||||||||| |||||||
Sbjct: 89282 ctggcacactttctgcgtatgaat 89305



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>gb|AC010034.7| Drosophila melanogaster 3L BAC RP98-4A21 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 154234

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 385   gtccaccgtccagttctcca 404
             ||||||||||||||||||||
Sbjct: 95719 gtccaccgtccagttctcca 95738



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>ref|NM_143808.2| Drosophila melanogaster CG5707-RA (CG5707), mRNA
          Length = 1494

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 385  gtccaccgtccagttctcca 404
            ||||||||||||||||||||
Sbjct: 1165 gtccaccgtccagttctcca 1146



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>gb|AY058274.1| Drosophila melanogaster GH02816 full length cDNA
          Length = 1482

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 385  gtccaccgtccagttctcca 404
            ||||||||||||||||||||
Sbjct: 1143 gtccaccgtccagttctcca 1124



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>gb|AC026188.6| Homo sapiens chromosome 3 clone RP11-319I18 map 3p, complete sequence
          Length = 177721

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 260   catatgaatttttcagggac 279
             ||||||||||||||||||||
Sbjct: 98912 catatgaatttttcagggac 98931



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>gb|AC154703.2| Mus musculus BAC clone RP24-349H1 from chromosome 14, complete sequence
          Length = 154588

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    attccattaaccacttgaag 35
             ||||||||||||||||||||
Sbjct: 21961 attccattaaccacttgaag 21980



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>gb|AY935574.1| Trypanosoma brucei variant surface glycoprotein MITat 1.8 (MITat 1.8)
            mRNA, complete cds
          Length = 1558

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 278  acttcttcaaaatcactgat 297
            ||||||||||||||||||||
Sbjct: 1129 acttcttcaaaatcactgat 1148



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>gb|AE003474.4| Drosophila melanogaster chromosome 3L, section 8 of 83 of the complete
             sequence
          Length = 312072

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 385   gtccaccgtccagttctcca 404
             ||||||||||||||||||||
Sbjct: 36610 gtccaccgtccagttctcca 36629



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>gb|AE003437.3| Drosophila melanogaster chromosome X, section 21 of 74 of the complete
              sequence
          Length = 305376

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 245    ctggcacactttctgcatatgaat 268
              |||||||||||||||| |||||||
Sbjct: 201278 ctggcacactttctgcgtatgaat 201301



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>dbj|AP000860.4| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-3I4, complete
              sequence
          Length = 103857

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 403    caagcccctctccatcctga 422
              ||||||||||||||||||||
Sbjct: 103530 caagcccctctccatcctga 103549



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>dbj|AP002993.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-456I15, complete
             sequences
          Length = 154839

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 403   caagcccctctccatcctga 422
             ||||||||||||||||||||
Sbjct: 59113 caagcccctctccatcctga 59132


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,324,896
Number of Sequences: 3902068
Number of extensions: 4324896
Number of successful extensions: 77252
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77126
Number of HSP's gapped (non-prelim): 120
length of query: 526
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 503
effective length of database: 17,143,297,704
effective search space: 8623078745112
effective search space used: 8623078745112
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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