ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart31h12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009604.1| Triticum aestivum clone wre1n.pk0082.c6:fis, full... 394 e-106
2gb|AY011123.1| Dactylis glomerata mitochondrial processing pepti... 186 5e-44
3dbj|AK101856.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 3e-17
4dbj|AK071930.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 3e-17
5gb|AY108609.1| Zea mays PCO088346 mRNA sequence 84 5e-13
6ref|NM_189667.1| Oryza sativa (japonica cultivar-group), predic... 78 3e-11
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
8dbj|AP002743.1| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
9emb|AL049820.23|HSDJ137K2 Human DNA sequence from clone RP1-137K... 46 0.11
10gb|AC102910.13| Mus musculus chromosome 15, clone RP24-280E23, c... 42 1.7
11gb|AC110209.11| Mus musculus chromosome 12, clone RP23-279O18, c... 42 1.7
12ref|XM_758790.1| Theileria parva strain Muguga chromosome 4 hypo... 42 1.7
13gb|AC080073.6| Homo sapiens BAC clone RP11-321C7 from 7, complet... 42 1.7
14emb|AL645617.9| Human DNA sequence from clone RP11-796C22 on chr... 42 1.7
15ref|NM_065960.2| Caenorhabditis elegans T12A2.8 (T12A2.8) mRNA, ... 42 1.7
16gb|AC114763.6| Homo sapiens BAC clone RP11-369K2 from 2, complet... 42 1.7
17emb|CT009504.11| Mouse DNA sequence from clone RP23-149M9 on chr... 42 1.7
18gb|AC131190.3| Mus musculus BAC clone RP24-332E15 from chromosom... 40 6.7
19gb|AC183773.2| Pan troglodytes BAC clone CH251-2N7 from chromoso... 40 6.7
20emb|Z81503.1|CEF14F7 Caenorhabditis elegans Cosmid F14F7, comple... 40 6.7
21gb|AF101305.2| Caenorhabditis elegans cosmid C04F5, complete seq... 40 6.7
22gb|AE014830.1| Plasmodium falciparum 3D7 chromosome 10 section 2... 40 6.7
23emb|AL121908.16|HSDJ719C8 Human DNA sequence from clone RP4-719C... 40 6.7
24emb|CR392344.7| Zebrafish DNA sequence from clone CH211-239D11 i... 40 6.7
25gb|AF498420.1| Pseudomonas aeruginosa serotype 09 putative O-ant... 40 6.7
26gb|AF498400.1| Pseudomonas aeruginosa serotype 01 putative O-ant... 40 6.7
27dbj|AK095305.1| Homo sapiens cDNA FLJ37986 fis, clone CTONG20111... 40 6.7
28gb|AC108161.4| Homo sapiens BAC clone RP11-621K7 from 4, complet... 40 6.7
29gb|AC090479.6| Mus Musculus Chromosome 18 RP23-363E23, complete ... 40 6.7
30gb|AC092361.3| Homo sapiens chromosome 5 clone RP11-356O21, comp... 40 6.7
31emb|BX323090.7| Zebrafish DNA sequence from clone CH211-274B7 in... 40 6.7
32gb|AC074008.5| Homo sapiens BAC clone RP11-582H21 from 2, comple... 40 6.7
33gb|AC138828.2| Homo sapiens chromosome 5 clone RP11-1156J4, comp... 40 6.7
34gb|AF540990.1| Pseudomonas aeruginosa isolate 1-60 O-antigen bio... 40 6.7
35gb|AC073244.13| Homo sapiens 3 BAC RP11-207J1 (Roswell Park Canc... 40 6.7
36gb|AC138854.2| Homo sapiens chromosome 5 clone RP11-1330D14, com... 40 6.7
37gb|AC115894.6| Mus musculus chromosome 18, clone RP24-443A14, co... 40 6.7
38gb|AC111047.10| Mus musculus chromosome 3, clone RP23-176H24, co... 40 6.7
39gb|AC171197.1| Mus musculus BAC clone RP23-216J7 from chromosome... 40 6.7 
>gb|BT009604.1| Triticum aestivum clone wre1n.pk0082.c6:fis, full insert mRNA
            sequence
          Length = 1676

 Score =  394 bits (199), Expect = e-106
 Identities = 261/281 (92%), Gaps = 8/281 (2%)
 Strand = Plus / Minus

                                                                        
Query: 211  taagatcccaaagttgtcccagtgtagaggagttaatgaccaaaattgtatgcatcttat 270
            ||||||||||||||| |||||  |||||||||||||| ||||||||||||||||||||||
Sbjct: 1441 taagatcccaaagttatcccacagtagaggagttaataaccaaaattgtatgcatcttat 1382

                                                                        
Query: 271  ttttcttgtgaaaaatgtgaccacagatgatcttgaagaaaaa---atatgaacagttaa 327
            |||||||||||||||||||||||     | ||||| |||||||   ||||||||||||||
Sbjct: 1381 ttttcttgtgaaaaatgtgacca-----ggtcttggagaaaaataaatatgaacagttaa 1327

                                                                        
Query: 328  cttgttcagaagcctcctcatttcgagctgaacttgccacgcactgtctcataggctggt 387
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1326 cttgttcagaagcctcctcatttcgagctgaacttgccacgcactgtctcgtaggctggt 1267

                                                                        
Query: 388  acgctgagaacgtttccatgagatgccattgtcaatggtgatgagatgatcttcgcagca 447
            ||  ||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 1266 acattgagaacatttccatgagatgccattgtcaatggtgacgagatgatcttctcagca 1207

                                                     
Query: 448  acagttgatacatctgccagagttatagcatcaacagcctt 488
            |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1206 acagttgatacatctgccagagttatagcatcaacagcctt 1166



 Score =  204 bits (103), Expect = 2e-49
 Identities = 170/194 (87%), Gaps = 3/194 (1%)
 Strand = Plus / Minus

                                                                        
Query: 4    cgtcatattgaatctttattcatttccttgccccagcactagtttcaacgactttaaccn 63
            ||||||||||||||||||||||||||  ||||||  |||| |||||| ||||||||||| 
Sbjct: 1653 cgtcatattgaatctttattcatttctgtgccccgacactggtttcatcgactttaaccc 1594

                                                                        
Query: 64   nnnnnngtggaggaacattttgtacacccttccggactgccaccgaaagagggccaccca 123
                  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1593 aaaaaagtggaggaacattttgtacacccttccggactgccactgaaagagggccaccca 1534

                                                                        
Query: 124  tgcatgatttcactgaatttacagtaacatatctcaagagaacaacatcacaccaccaaa 183
            |  ||||||||||||||||||||| ||||||||||  |||   |||||||||||| ||||
Sbjct: 1533 tatatgatttcactgaatttacaggaacatatctcttgag---aacatcacaccaacaaa 1477

                          
Query: 184  ctcaggtggataca 197
             |||||||||||||
Sbjct: 1476 ttcaggtggataca 1463
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>gb|AY011123.1| Dactylis glomerata mitochondrial processing peptidase alpha-chain
            precursor (DGMPP) mRNA, complete cds
          Length = 1799

 Score =  186 bits (94), Expect = 5e-44
 Identities = 161/182 (88%), Gaps = 1/182 (0%)
 Strand = Plus / Minus

                                                                        
Query: 282  aaaatgtgaccacagatgatcttgaa-gaaaaaatatgaacagttaacttgttcagaagc 340
            |||||||||||| | ||||||||| | ||||| |||| |||||||| ||||| |||| ||
Sbjct: 1659 aaaatgtgaccagaaatgatcttggatgaaaatatatcaacagttatcttgtccagacgc 1600

                                                                        
Query: 341  ctcctcatttcgagctgaacttgccacgcactgtctcataggctggtacgctgagaacgt 400
            || |||||||||||||||||||||| ||||||||||| || ||||||||| |||||||||
Sbjct: 1599 ctactcatttcgagctgaacttgccgcgcactgtctcgtaagctggtacgttgagaacgt 1540

                                                                        
Query: 401  ttccatgagatgccattgtcaatggtgatgagatgatcttcgcagcaacagttgatacat 460
             |||||| ||||||||||||||||||||||||||||| ||| |||| | || ||||||||
Sbjct: 1539 ctccatgggatgccattgtcaatggtgatgagatgattttctcagcgagagctgatacat 1480

              
Query: 461  ct 462
            ||
Sbjct: 1479 ct 1478
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>dbj|AK101856.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069O10, full
            insert sequence
          Length = 2012

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 91/105 (86%)
 Strand = Plus / Minus

                                                                        
Query: 344  ctcatttcgagctgaacttgccacgcactgtctcataggctggtacgctgagaacgtttc 403
            ||||||||||||  ||||||||||  ||||  ||||| | ||| ||| | ||||||||||
Sbjct: 1650 ctcatttcgagcgaaacttgccactgactgaatcataagttggcacgttcagaacgtttc 1591

                                                         
Query: 404  catgagatgccattgtcaatggtgatgagatgatcttcgcagcaa 448
            |||||||||||||||||||||||||||| ||||| ||| ||||||
Sbjct: 1590 catgagatgccattgtcaatggtgatgatatgattttctcagcaa 1546
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>dbj|AK071930.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073N24, full
            insert sequence
          Length = 1991

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 91/105 (86%)
 Strand = Plus / Minus

                                                                        
Query: 344  ctcatttcgagctgaacttgccacgcactgtctcataggctggtacgctgagaacgtttc 403
            ||||||||||||  ||||||||||  ||||  ||||| | ||| ||| | ||||||||||
Sbjct: 1644 ctcatttcgagcgaaacttgccactgactgaatcataagttggcacgttcagaacgtttc 1585

                                                         
Query: 404  catgagatgccattgtcaatggtgatgagatgatcttcgcagcaa 448
            |||||||||||||||||||||||||||| ||||| ||| ||||||
Sbjct: 1584 catgagatgccattgtcaatggtgatgatatgattttctcagcaa 1540
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>gb|AY108609.1| Zea mays PCO088346 mRNA sequence
          Length = 2030

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 54/58 (93%)
 Strand = Plus / Minus

                                                                      
Query: 394  agaacgtttccatgagatgccattgtcaatggtgatgagatgatcttcgcagcaacag 451
            |||||||||||||||||||||||||||||||| ||||| ||||||||  |||||||||
Sbjct: 1616 agaacgtttccatgagatgccattgtcaatggggatgaaatgatcttttcagcaacag 1559
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>ref|NM_189667.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2478

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 48/51 (94%)
 Strand = Plus / Minus

                                                               
Query: 398  cgtttccatgagatgccattgtcaatggtgatgagatgatcttcgcagcaa 448
            |||||||||||||||||||||||||||||||||| ||||| ||| ||||||
Sbjct: 2143 cgtttccatgagatgccattgtcaatggtgatgatatgattttctcagcaa 2093
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 48/51 (94%)
 Strand = Plus / Minus

                                                                  
Query: 398     cgtttccatgagatgccattgtcaatggtgatgagatgatcttcgcagcaa 448
               |||||||||||||||||||||||||||||||||| ||||| ||| ||||||
Sbjct: 4895375 cgtttccatgagatgccattgtcaatggtgatgatatgattttctcagcaa 4895325
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>dbj|AP002743.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0710E05
          Length = 179714

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 48/51 (94%)
 Strand = Plus / Minus

                                                                 
Query: 398    cgtttccatgagatgccattgtcaatggtgatgagatgatcttcgcagcaa 448
              |||||||||||||||||||||||||||||||||| ||||| ||| ||||||
Sbjct: 140024 cgtttccatgagatgccattgtcaatggtgatgatatgattttctcagcaa 139974
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>emb|AL049820.23|HSDJ137K2 Human DNA sequence from clone RP1-137K2 on chromosome 6q25.1-25.3
              Contains part of the gene for BRG1-binding protein ELD/OSA1
              (p250R KIAA1235) (FLJ00253 FLJ22292), a novel gene and two
              CpG islands, complete sequence
          Length = 187507

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 125    gcatgatttcactgaatttacag 147
              |||||||||||||||||||||||
Sbjct: 161069 gcatgatttcactgaatttacag 161091
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>gb|AC102910.13| Mus musculus chromosome 15, clone RP24-280E23, complete sequence
          Length = 179719

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 241   agttaatgaccaaaattgtat 261
             |||||||||||||||||||||
Sbjct: 61917 agttaatgaccaaaattgtat 61937
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>gb|AC110209.11| Mus musculus chromosome 12, clone RP23-279O18, complete sequence
          Length = 177587

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 461   ctgccagagttatagcatcaa 481
             |||||||||||||||||||||
Sbjct: 20594 ctgccagagttatagcatcaa 20614
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>ref|XM_758790.1| Theileria parva strain Muguga chromosome 4 hypothetical protein
           (TP04_0248) partial mRNA
          Length = 1698

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 164 aacaacatcacaccaccaaactcag 188
           |||||| ||||||||||||||||||
Sbjct: 809 aacaacttcacaccaccaaactcag 785
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>gb|AC080073.6| Homo sapiens BAC clone RP11-321C7 from 7, complete sequence
          Length = 57075

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 424   ggtgatgagatgatcttcgcagcaa 448
             ||||||||||||||||| |||||||
Sbjct: 35226 ggtgatgagatgatctttgcagcaa 35202
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>emb|AL645617.9| Human DNA sequence from clone RP11-796C22 on chromosome 10 Contains
             part of the UPF2 gene for UPF2 regulator of nonsense
             transcripts homolog (yeast) (FLJ38872), complete sequence
          Length = 76287

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 424   ggtgatgagatgatcttcgcagcaa 448
             |||||||||||||||| ||||||||
Sbjct: 58397 ggtgatgagatgatctgcgcagcaa 58421
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>ref|NM_065960.2| Caenorhabditis elegans T12A2.8 (T12A2.8) mRNA, complete cds
          Length = 2544

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 273 ttcttgtgaaaaatgtgacca 293
           |||||||||||||||||||||
Sbjct: 268 ttcttgtgaaaaatgtgacca 248
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>gb|AC114763.6| Homo sapiens BAC clone RP11-369K2 from 2, complete sequence
          Length = 87248

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 270   tttttcttgtgaaaaatgtga 290
             |||||||||||||||||||||
Sbjct: 40734 tttttcttgtgaaaaatgtga 40714
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>emb|CT009504.11| Mouse DNA sequence from clone RP23-149M9 on chromosome 12, complete
            sequence
          Length = 190345

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 461  ctgccagagttatagcatcaa 481
            |||||||||||||||||||||
Sbjct: 2934 ctgccagagttatagcatcaa 2914
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>gb|AC131190.3| Mus musculus BAC clone RP24-332E15 from chromosome 5, complete sequence
          Length = 176925

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 261   tgcatcttatttttcttgtg 280
             ||||||||||||||||||||
Sbjct: 96818 tgcatcttatttttcttgtg 96799
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>gb|AC183773.2| Pan troglodytes BAC clone CH251-2N7 from chromosome 7, complete sequence
          Length = 168126

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 424    ggtgatgagatgatcttcgcagca 447
              ||||||||||||||||| ||||||
Sbjct: 123750 ggtgatgagatgatctttgcagca 123773
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>emb|Z81503.1|CEF14F7 Caenorhabditis elegans Cosmid F14F7, complete sequence
          Length = 25468

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 251  caaaattgtatgcatcttat 270
            ||||||||||||||||||||
Sbjct: 8625 caaaattgtatgcatcttat 8606
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>gb|AF101305.2| Caenorhabditis elegans cosmid C04F5, complete sequence
          Length = 40766

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 245   aatgaccaaaattgtatgca 264
             ||||||||||||||||||||
Sbjct: 32199 aatgaccaaaattgtatgca 32218
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>gb|AE014830.1| Plasmodium falciparum 3D7 chromosome 10 section 2 of 7 of the complete
              sequence
          Length = 250029

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 242    gttaatgaccaaaattgtat 261
              ||||||||||||||||||||
Sbjct: 246428 gttaatgaccaaaattgtat 246409
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>emb|AL121908.16|HSDJ719C8 Human DNA sequence from clone RP4-719C8 on chromosome 20 Contains three
              different 5' ends of the C20orf101 gene and three CpG
              islands, complete sequence
          Length = 150985

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 295    agatgatcttgaagaaaaaa 314
              ||||||||||||||||||||
Sbjct: 139494 agatgatcttgaagaaaaaa 139475
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>emb|CR392344.7| Zebrafish DNA sequence from clone CH211-239D11 in linkage group 20
             Contains the 3' end of the gene for a novel protein
             similar to vertebrate X-ray repair complementing defective
             repair in Chinese hamster cells 5 (double-strand-break
             rejoining; Ku autoantigen, 80kDa) (XRCC5), the gene for a
             novel protein similar to vertebrate SWI/SNF related matrix
             associated actin dependent regulator of chromatin
             subfamily a-like 1 (SMARCAL1), two novel genes and three
             CpG islands, complete sequence
          Length = 150882

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 172   cacaccaccaaactcaggtg 191
             ||||||||||||||||||||
Sbjct: 20138 cacaccaccaaactcaggtg 20157
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>gb|AF498420.1| Pseudomonas aeruginosa serotype 09 putative O-antigen biosynthesis gene
             cluster, partial sequence
          Length = 16349

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 409   gatgccattgtcaatggtga 428
             ||||||||||||||||||||
Sbjct: 13177 gatgccattgtcaatggtga 13196
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>gb|AF498400.1| Pseudomonas aeruginosa serotype 01 putative O-antigen biosynthesis gene
             cluster, partial sequence
          Length = 17453

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 409   gatgccattgtcaatggtga 428
             ||||||||||||||||||||
Sbjct: 14281 gatgccattgtcaatggtga 14300
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>dbj|AK095305.1| Homo sapiens cDNA FLJ37986 fis, clone CTONG2011188, highly similar
           to EPHRIN TYPE-B RECEPTOR 1 PRECURSOR (EC 2.7.1.112)
          Length = 2737

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 326 aacttgttcagaagcctcct 345
           ||||||||||||||||||||
Sbjct: 187 aacttgttcagaagcctcct 168
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>gb|AC108161.4| Homo sapiens BAC clone RP11-621K7 from 4, complete sequence
          Length = 83023

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    atctttattcatttccttgc 34
             ||||||||||||||||||||
Sbjct: 74357 atctttattcatttccttgc 74376
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>gb|AC090479.6| Mus Musculus Chromosome 18 RP23-363E23, complete sequence
          Length = 199409

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 130    atttcactgaatttacagta 149
              ||||||||||||||||||||
Sbjct: 177713 atttcactgaatttacagta 177694
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>gb|AC092361.3| Homo sapiens chromosome 5 clone RP11-356O21, complete sequence
          Length = 166133

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 305   gaagaaaaaatatgaacagt 324
             ||||||||||||||||||||
Sbjct: 45416 gaagaaaaaatatgaacagt 45435
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>emb|BX323090.7| Zebrafish DNA sequence from clone CH211-274B7 in linkage group 1,
              complete sequence
          Length = 166353

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 261    tgcatcttatttttcttgtgaaaa 284
              |||||||||||||| |||||||||
Sbjct: 150147 tgcatcttattttttttgtgaaaa 150124
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>gb|AC074008.5| Homo sapiens BAC clone RP11-582H21 from 2, complete sequence
          Length = 159439

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 20    tattcatttccttgccccag 39
             ||||||||||||||||||||
Sbjct: 38217 tattcatttccttgccccag 38198
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>gb|AC138828.2| Homo sapiens chromosome 5 clone RP11-1156J4, complete sequence
          Length = 184142

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 305   gaagaaaaaatatgaacagt 324
             ||||||||||||||||||||
Sbjct: 89621 gaagaaaaaatatgaacagt 89640
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>gb|AF540990.1| Pseudomonas aeruginosa isolate 1-60 O-antigen biosynthetic locus,
             partial sequence
          Length = 19104

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 409   gatgccattgtcaatggtga 428
             ||||||||||||||||||||
Sbjct: 15929 gatgccattgtcaatggtga 15948
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>gb|AC073244.13| Homo sapiens 3 BAC RP11-207J1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 109999

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 326   aacttgttcagaagcctcct 345
             ||||||||||||||||||||
Sbjct: 91747 aacttgttcagaagcctcct 91766
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>gb|AC138854.2| Homo sapiens chromosome 5 clone RP11-1330D14, complete sequence
          Length = 203368

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 305   gaagaaaaaatatgaacagt 324
             ||||||||||||||||||||
Sbjct: 80706 gaagaaaaaatatgaacagt 80725
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>gb|AC115894.6| Mus musculus chromosome 18, clone RP24-443A14, complete sequence
          Length = 185242

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 130    atttcactgaatttacagta 149
              ||||||||||||||||||||
Sbjct: 128212 atttcactgaatttacagta 128231
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>gb|AC111047.10| Mus musculus chromosome 3, clone RP23-176H24, complete sequence
          Length = 205473

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 20     tattcatttccttgccccag 39
              ||||||||||||||||||||
Sbjct: 119934 tattcatttccttgccccag 119953
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>gb|AC171197.1| Mus musculus BAC clone RP23-216J7 from chromosome 5, complete
            sequence
          Length = 211677

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 261  tgcatcttatttttcttgtg 280
            ||||||||||||||||||||
Sbjct: 9841 tgcatcttatttttcttgtg 9822


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,005,440
Number of Sequences: 3902068
Number of extensions: 5005440
Number of successful extensions: 109167
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 109035
Number of HSP's gapped (non-prelim): 129
length of query: 492
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 470
effective length of database: 17,147,199,772
effective search space: 8059183892840
effective search space used: 8059183892840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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