ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart31h10 |
|---|---|
| Clone Library Name | barley_pub |
>GI1L1_ARATH (Q9MAA7) Probable gibberellin receptor GID1L1 (EC 3.-.-.-)| (GID1-like protein 1) Length = 345 Score = 42.0 bits (97), Expect = 8e-04 Identities = 21/73 (28%), Positives = 39/73 (53%) Frame = -2 Query: 418 WRVVCPQTTGADDPWINPLAAGAKTMRGLACRRVLMCLAETDVVRDRGRAYCDGLRASGW 239 W+ P+ + P NP + K++ G++ + L+ +A D++RD AY +GL+ +G Sbjct: 248 WKAFLPEGEDREHPACNPFSPRGKSLEGVSFPKSLVVVAGLDLIRDWQLAYAEGLKKAGQ 307 Query: 238 AGEVELLEVAGQG 200 ++ LE A G Sbjct: 308 EVKLMHLEKATVG 320
>GI1L2_ARATH (Q9LYC1) Probable gibberellin receptor GID1L2 (EC 3.-.-.-)| (GID1-like protein 2) Length = 358 Score = 41.6 bits (96), Expect = 0.001 Identities = 23/67 (34%), Positives = 36/67 (53%) Frame = -2 Query: 418 WRVVCPQTTGADDPWINPLAAGAKTMRGLACRRVLMCLAETDVVRDRGRAYCDGLRASGW 239 WR P+ D P NP ++++G+ + L+ +A D+V+D AY DGL+ +G Sbjct: 248 WRAYLPEGEDRDHPACNPFGPRGQSLKGVNFPKSLVVVAGLDLVQDWQLAYVDGLKKTGL 307 Query: 238 AGEVELL 218 EV LL Sbjct: 308 --EVNLL 312
>GID1_ORYSA (Q6L545) Gibberellin receptor GID1 (EC 3.-.-.-)| (Gibberellin-insensitive dwarf protein 1) (Protein GIBBERELLIN INSENSITIVE DWARF1) Length = 354 Score = 39.3 bits (90), Expect = 0.005 Identities = 22/73 (30%), Positives = 32/73 (43%) Frame = -2 Query: 418 WRVVCPQTTGADDPWINPLAAGAKTMRGLACRRVLMCLAETDVVRDRGRAYCDGLRASGW 239 W+ P+ D P NP + + GL + L+ ++ D+ DR AY D LR G Sbjct: 255 WKAYLPEDADRDHPACNPFGPNGRRLGGLPFAKSLIIVSGLDLTCDRQLAYADALREDGH 314 Query: 238 AGEVELLEVAGQG 200 +V E A G Sbjct: 315 HVKVVQCENATVG 327
>HUCE1_MOUSE (Q9DB85) Cerebral protein 1 homolog| Length = 457 Score = 30.4 bits (67), Expect = 2.4 Identities = 16/47 (34%), Positives = 25/47 (53%) Frame = +3 Query: 330 ASPRIVFAPAASGLIHGSSAPVVWGHTTRHIFTTFSAITGSLSSEGT 470 A+P IV AA+ + ++AP V G RH+ T A+ + S+ T Sbjct: 10 AAPAIVGLGAATAQVRPATAPPVKGRKRRHLLATLRALEAASLSQQT 56
>ARGJ_DEHE1 (Q3Z731) Arginine biosynthesis bifunctional protein argJ [Includes:| Glutamate N-acetyltransferase (EC 2.3.1.35) (Ornithine acetyltransferase) (Ornithine transacetylase) (OATase); Amino-acid acetyltransferase (EC 2.3.1.1) (N-acetylglutamate syn Length = 405 Score = 30.4 bits (67), Expect = 2.4 Identities = 18/58 (31%), Positives = 27/58 (46%) Frame = -2 Query: 391 GADDPWINPLAAGAKTMRGLACRRVLMCLAETDVVRDRGRAYCDGLRASGWAGEVELL 218 GAD W LAA ++ RV + L E+ V++ R D S W +VE++ Sbjct: 316 GADPNWGRILAAAGRSGADFDIERVDLYLGESRVLQKGQRTGADEKELSSWLKQVEVI 373
>NMCR_ENTCL (P52676) Carbapenem-hydrolyzing beta-lactamase transcriptional| activator Length = 295 Score = 30.0 bits (66), Expect = 3.1 Identities = 12/32 (37%), Positives = 18/32 (56%) Frame = +2 Query: 23 SPDASKREYRSSDVARSCIMRSENARVHETWF 118 SP+ SK+ Y SD+ + C++RS WF Sbjct: 169 SPETSKKLYIPSDLKKVCLLRSYRKEEWNNWF 200
>GCSP_SCHPO (Q09785) Putative glycine dehydrogenase [decarboxylating],| mitochondrial precursor (EC 1.4.4.2) (Glycine decarboxylase) (Glycine cleavage system P-protein) Length = 1017 Score = 29.6 bits (65), Expect = 4.1 Identities = 12/27 (44%), Positives = 19/27 (70%) Frame = +3 Query: 105 TRHGFYRFRNLAMASSCLTASSQEKLP 185 +RH F RNL+++S+CL A + +K P Sbjct: 18 SRHLFLAKRNLSISSACLEAKNSQKFP 44
>NAGC_SHIFL (P0AF23) N-acetylglucosamine repressor| Length = 406 Score = 28.9 bits (63), Expect = 6.9 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Frame = -2 Query: 247 SGWAGEVELLEVAGQGHCSHLGNFSCDDAVRQDDAI-ARFLNL*K 116 +G GE+ ++V G H GNF C + + + AI R LNL K Sbjct: 239 NGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLK 283
>NAGC_ECOLI (P0AF20) N-acetylglucosamine repressor| Length = 406 Score = 28.9 bits (63), Expect = 6.9 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Frame = -2 Query: 247 SGWAGEVELLEVAGQGHCSHLGNFSCDDAVRQDDAI-ARFLNL*K 116 +G GE+ ++V G H GNF C + + + AI R LNL K Sbjct: 239 NGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLK 283
>NAGC_ECOL6 (P0AF21) N-acetylglucosamine repressor| Length = 406 Score = 28.9 bits (63), Expect = 6.9 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Frame = -2 Query: 247 SGWAGEVELLEVAGQGHCSHLGNFSCDDAVRQDDAI-ARFLNL*K 116 +G GE+ ++V G H GNF C + + + AI R LNL K Sbjct: 239 NGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLK 283
>NAGC_ECO57 (P0AF22) N-acetylglucosamine repressor| Length = 406 Score = 28.9 bits (63), Expect = 6.9 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Frame = -2 Query: 247 SGWAGEVELLEVAGQGHCSHLGNFSCDDAVRQDDAI-ARFLNL*K 116 +G GE+ ++V G H GNF C + + + AI R LNL K Sbjct: 239 NGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLK 283
>FA8A1_HUMAN (Q9UBU6) Protein FAM8A1 (Autosomal highly conserved protein)| Length = 413 Score = 28.5 bits (62), Expect = 9.1 Identities = 25/78 (32%), Positives = 31/78 (39%) Frame = -2 Query: 457 DSDPVMAENVVKMWRVVCPQTTGADDPWINPLAAGAKTMRGLACRRVLMCLAETDVVRDR 278 D +PV + V CP+ DDP P A G T GLA L +R R Sbjct: 21 DHEPVPSLRGPPTTAVPCPR----DDPQAEPQAPGRPTAPGLAAAAAADKLEPPRELRKR 76 Query: 277 GRAYCDGLRASGWAGEVE 224 G A ASG E++ Sbjct: 77 GEA------ASGSGAELQ 88 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,824,680 Number of Sequences: 219361 Number of extensions: 942135 Number of successful extensions: 2678 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2637 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2678 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
