ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart31h10 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 224 bits (113), Expect = 2e-55 Identities = 275/329 (83%) Strand = Plus / Plus Query: 138 gcaatggcatcgtcctgcctgacggcgtcgtcgcaggagaagttgccgagatgggagcag 197 |||||||| ||||||||||||||||| ||||||| | ||||| || ||| ||||| Sbjct: 17416567 gcaatggcgtcgtcctgcctgacggcctcgtcgccgttgaagtccatcaggtggaagcag 17416626 Query: 198 tggccctgcccggccacctcgagcagctccacctccccggcccacccgctcgccctgagc 257 ||||| || ||||||||||||| | |||||||||||| ||||||||||||||| | ||| Sbjct: 17416627 tggccatggccggccacctcgacgacctccacctcccccgcccacccgctcgccttaagc 17416686 Query: 258 ccatcgcagtacgcgcggccgcggtcgcggaccacgtccgtctccgcgaggcacatgagc 317 || |||||||||||||||||||||||||||| ||| ||| ||||||||||||||| |||| Sbjct: 17416687 ccctcgcagtacgcgcggccgcggtcgcggatcacatccttctccgcgaggcacacgagc 17416746 Query: 318 acgcgccggcacgccagcccgcgcatcgtcttcgcgccggcggccagcgggttgatccac 377 ||||| | ||| |||||||| || | | ||||||| |||| ||||||||||||||| Sbjct: 17416747 acgcggccgcaggccagcccttccaaccccggcgcgccgtcggcgagcgggttgatccac 17416806 Query: 378 gggtcatcggcgcccgtggtctgggggcacaccacccgccacatcttcaccacgttctcg 437 || || ||| |||| |||||| |||||||| || | ||||||||||||||||||||| Sbjct: 17416807 ggatcgtcgacgccggtggtcgccgggcacacgacgctccacatcttcaccacgttctcc 17416866 Query: 438 gccatcacggggtcgctgtcctcggaggg 466 |||||| | ||||| | |||||| ||||| Sbjct: 17416867 gccatcgccgggtcccagtcctctgaggg 17416895
>dbj|AP006849.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0054F02 Length = 180651 Score = 224 bits (113), Expect = 2e-55 Identities = 275/329 (83%) Strand = Plus / Plus Query: 138 gcaatggcatcgtcctgcctgacggcgtcgtcgcaggagaagttgccgagatgggagcag 197 |||||||| ||||||||||||||||| ||||||| | ||||| || ||| ||||| Sbjct: 140480 gcaatggcgtcgtcctgcctgacggcctcgtcgccgttgaagtccatcaggtggaagcag 140539 Query: 198 tggccctgcccggccacctcgagcagctccacctccccggcccacccgctcgccctgagc 257 ||||| || ||||||||||||| | |||||||||||| ||||||||||||||| | ||| Sbjct: 140540 tggccatggccggccacctcgacgacctccacctcccccgcccacccgctcgccttaagc 140599 Query: 258 ccatcgcagtacgcgcggccgcggtcgcggaccacgtccgtctccgcgaggcacatgagc 317 || |||||||||||||||||||||||||||| ||| ||| ||||||||||||||| |||| Sbjct: 140600 ccctcgcagtacgcgcggccgcggtcgcggatcacatccttctccgcgaggcacacgagc 140659 Query: 318 acgcgccggcacgccagcccgcgcatcgtcttcgcgccggcggccagcgggttgatccac 377 ||||| | ||| |||||||| || | | ||||||| |||| ||||||||||||||| Sbjct: 140660 acgcggccgcaggccagcccttccaaccccggcgcgccgtcggcgagcgggttgatccac 140719 Query: 378 gggtcatcggcgcccgtggtctgggggcacaccacccgccacatcttcaccacgttctcg 437 || || ||| |||| |||||| |||||||| || | ||||||||||||||||||||| Sbjct: 140720 ggatcgtcgacgccggtggtcgccgggcacacgacgctccacatcttcaccacgttctcc 140779 Query: 438 gccatcacggggtcgctgtcctcggaggg 466 |||||| | ||||| | |||||| ||||| Sbjct: 140780 gccatcgccgggtcccagtcctctgaggg 140808
>dbj|AK064734.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-120-C05, full insert sequence Length = 1162 Score = 224 bits (113), Expect = 2e-55 Identities = 275/329 (83%) Strand = Plus / Minus Query: 138 gcaatggcatcgtcctgcctgacggcgtcgtcgcaggagaagttgccgagatgggagcag 197 |||||||| ||||||||||||||||| ||||||| | ||||| || ||| ||||| Sbjct: 992 gcaatggcgtcgtcctgcctgacggcctcgtcgccgttgaagtccatcaggtggaagcag 933 Query: 198 tggccctgcccggccacctcgagcagctccacctccccggcccacccgctcgccctgagc 257 ||||| || ||||||||||||| | |||||||||||| ||||||||||||||| | ||| Sbjct: 932 tggccatggccggccacctcgacgacctccacctcccccgcccacccgctcgccttaagc 873 Query: 258 ccatcgcagtacgcgcggccgcggtcgcggaccacgtccgtctccgcgaggcacatgagc 317 || |||||||||||||||||||||||||||| ||| ||| ||||||||||||||| |||| Sbjct: 872 ccctcgcagtacgcgcggccgcggtcgcggatcacatccttctccgcgaggcacacgagc 813 Query: 318 acgcgccggcacgccagcccgcgcatcgtcttcgcgccggcggccagcgggttgatccac 377 ||||| | ||| |||||||| || | | ||||||| |||| ||||||||||||||| Sbjct: 812 acgcggccgcaggccagcccttccaaccccggcgcgccgtcggcgagcgggttgatccac 753 Query: 378 gggtcatcggcgcccgtggtctgggggcacaccacccgccacatcttcaccacgttctcg 437 || || ||| |||| |||||| |||||||| || | ||||||||||||||||||||| Sbjct: 752 ggatcgtcgacgccggtggtcgccgggcacacgacgctccacatcttcaccacgttctcc 693 Query: 438 gccatcacggggtcgctgtcctcggaggg 466 |||||| | ||||| | |||||| ||||| Sbjct: 692 gccatcgccgggtcccagtcctctgaggg 664
>ref|XM_482929.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1377 Score = 58.0 bits (29), Expect = 3e-05 Identities = 50/57 (87%) Strand = Plus / Minus Query: 239 ccacccgctcgccctgagcccatcgcagtacgcgcggccgcggtcgcggaccacgtc 295 ||||||||||| | |||||| ||| |||| ||||||||||||||||||| |||||| Sbjct: 946 ccacccgctcgacgtgagccggtcgtagtaggcgcggccgcggtcgcggagcacgtc 890
>ref|XM_507269.1| PREDICTED Oryza sativa (japonica cultivar-group), P0451G12.24 mRNA Length = 1426 Score = 58.0 bits (29), Expect = 3e-05 Identities = 50/57 (87%) Strand = Plus / Minus Query: 239 ccacccgctcgccctgagcccatcgcagtacgcgcggccgcggtcgcggaccacgtc 295 ||||||||||| | |||||| ||| |||| ||||||||||||||||||| |||||| Sbjct: 948 ccacccgctcgacgtgagccggtcgtagtaggcgcggccgcggtcgcggagcacgtc 892
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 58.0 bits (29), Expect = 3e-05 Identities = 50/57 (87%) Strand = Plus / Minus Query: 239 ccacccgctcgccctgagcccatcgcagtacgcgcggccgcggtcgcggaccacgtc 295 ||||||||||| | |||||| ||| |||| ||||||||||||||||||| |||||| Sbjct: 23412445 ccacccgctcgacgtgagccggtcgtagtaggcgcggccgcggtcgcggagcacgtc 23412389 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 350 cgcgccggcggccagcgggttgatccacgggtc 382 ||||||| |||||| ||||||||||| |||||| Sbjct: 23410660 cgcgccgtcggccaccgggttgatccgcgggtc 23410628
>dbj|AP004399.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0451G12 Length = 142182 Score = 58.0 bits (29), Expect = 3e-05 Identities = 50/57 (87%) Strand = Plus / Minus Query: 239 ccacccgctcgccctgagcccatcgcagtacgcgcggccgcggtcgcggaccacgtc 295 ||||||||||| | |||||| ||| |||| ||||||||||||||||||| |||||| Sbjct: 94282 ccacccgctcgacgtgagccggtcgtagtaggcgcggccgcggtcgcggagcacgtc 94226 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 350 cgcgccggcggccagcgggttgatccacgggtc 382 ||||||| |||||| ||||||||||| |||||| Sbjct: 92497 cgcgccgtcggccaccgggttgatccgcgggtc 92465
>dbj|AP004154.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1111_E05 Length = 126978 Score = 58.0 bits (29), Expect = 3e-05 Identities = 50/57 (87%) Strand = Plus / Minus Query: 239 ccacccgctcgccctgagcccatcgcagtacgcgcggccgcggtcgcggaccacgtc 295 ||||||||||| | |||||| ||| |||| ||||||||||||||||||| |||||| Sbjct: 3860 ccacccgctcgacgtgagccggtcgtagtaggcgcggccgcggtcgcggagcacgtc 3804 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 350 cgcgccggcggccagcgggttgatccacgggtc 382 ||||||| |||||| ||||||||||| |||||| Sbjct: 2075 cgcgccgtcggccaccgggttgatccgcgggtc 2043
>dbj|AK073975.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033072F03, full insert sequence Length = 1377 Score = 58.0 bits (29), Expect = 3e-05 Identities = 50/57 (87%) Strand = Plus / Minus Query: 239 ccacccgctcgccctgagcccatcgcagtacgcgcggccgcggtcgcggaccacgtc 295 ||||||||||| | |||||| ||| |||| ||||||||||||||||||| |||||| Sbjct: 946 ccacccgctcgacgtgagccggtcgtagtaggcgcggccgcggtcgcggagcacgtc 890
>dbj|AK060706.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-H02, full insert sequence Length = 1426 Score = 58.0 bits (29), Expect = 3e-05 Identities = 50/57 (87%) Strand = Plus / Minus Query: 239 ccacccgctcgccctgagcccatcgcagtacgcgcggccgcggtcgcggaccacgtc 295 ||||||||||| | |||||| ||| |||| ||||||||||||||||||| |||||| Sbjct: 948 ccacccgctcgacgtgagccggtcgtagtaggcgcggccgcggtcgcggagcacgtc 892
>ref|XM_478023.1| Oryza sativa (japonica cultivar-group), mRNA Length = 891 Score = 56.0 bits (28), Expect = 1e-04 Identities = 84/102 (82%), Gaps = 3/102 (2%) Strand = Plus / Plus Query: 364 gcgggttgatccacgggtcatcggcg---cccgtggtctgggggcacaccacccgccaca 420 ||||||||||||||||||| ||| || || |||||| |||||||| || | ||||| Sbjct: 233 gcgggttgatccacgggtcgtcgtcgacaccggtggtcgccgggcacacgacgctccaca 292 Query: 421 tcttcaccacgttctcggccatcacggggtcgctgtcctcgg 462 |||||||||| ||||| |||||| | ||||| | |||||||| Sbjct: 293 tcttcaccacattctccgccatcgccgggtcccagtcctcgg 334
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 56.0 bits (28), Expect = 1e-04 Identities = 84/102 (82%), Gaps = 3/102 (2%) Strand = Plus / Plus Query: 364 gcgggttgatccacgggtcatcggcg---cccgtggtctgggggcacaccacccgccaca 420 ||||||||||||||||||| ||| || || |||||| |||||||| || | ||||| Sbjct: 16711097 gcgggttgatccacgggtcgtcgtcgacaccggtggtcgccgggcacacgacgctccaca 16711156 Query: 421 tcttcaccacgttctcggccatcacggggtcgctgtcctcgg 462 |||||||||| ||||| |||||| | ||||| | |||||||| Sbjct: 16711157 tcttcaccacattctccgccatcgccgggtcccagtcctcgg 16711198
>dbj|AP003808.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1115_C05 Length = 146585 Score = 56.0 bits (28), Expect = 1e-04 Identities = 84/102 (82%), Gaps = 3/102 (2%) Strand = Plus / Plus Query: 364 gcgggttgatccacgggtcatcggcg---cccgtggtctgggggcacaccacccgccaca 420 ||||||||||||||||||| ||| || || |||||| |||||||| || | ||||| Sbjct: 51009 gcgggttgatccacgggtcgtcgtcgacaccggtggtcgccgggcacacgacgctccaca 51068 Query: 421 tcttcaccacgttctcggccatcacggggtcgctgtcctcgg 462 |||||||||| ||||| |||||| | ||||| | |||||||| Sbjct: 51069 tcttcaccacattctccgccatcgccgggtcccagtcctcgg 51110
>gb|DQ163912.1| Bacteriophage F10, complete genome Length = 39199 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 350 cgcgccggcggccagcgggttga 372 ||||||||||||||||||||||| Sbjct: 15544 cgcgccggcggccagcgggttga 15566
>gb|AC109201.12| Mus musculus chromosome 15, clone RP23-18P10, complete sequence Length = 213493 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 94 tgcccgtgtccacgagacatgg 115 |||||||||||||||||||||| Sbjct: 29294 tgcccgtgtccacgagacatgg 29315
>dbj|AK157575.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830224H04 product:unclassifiable, full insert sequence Length = 3720 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 94 tgcccgtgtccacgagacatgg 115 |||||||||||||||||||||| Sbjct: 382 tgcccgtgtccacgagacatgg 361
>dbj|AK040250.1| Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched library, clone:A430080J11 product:unclassifiable, full insert sequence Length = 3495 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 94 tgcccgtgtccacgagacatgg 115 |||||||||||||||||||||| Sbjct: 154 tgcccgtgtccacgagacatgg 133
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 209 ggccacctcgagcagctccacc 230 |||||||||||||||||||||| Sbjct: 1537774 ggccacctcgagcagctccacc 1537795
>ref|XM_482928.1| Oryza sativa (japonica cultivar-group), mRNA Length = 963 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 350 cgcgccggcggccagcgggttgatccacgggtc 382 ||||||| |||||| ||||||||||| |||||| Sbjct: 729 cgcgccgtcggccaccgggttgatccgcgggtc 697
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 320 gcgccggcacgccagcccgcg 340 ||||||||||||||||||||| Sbjct: 2483781 gcgccggcacgccagcccgcg 2483801
>gb|AC113113.18| Mus musculus chromosome 16, clone RP23-334P10, complete sequence Length = 216380 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 232 ccccggcccacccgctcgccc 252 ||||||||||||||||||||| Sbjct: 208201 ccccggcccacccgctcgccc 208221
>ref|XM_955684.1| Neurospora crassa OR74A hypothetical protein (NCU01260.1) partial mRNA Length = 6924 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 208 cggccacctcgagcagctccacctc 232 |||||||| |||||||||||||||| Sbjct: 2534 cggccaccgcgagcagctccacctc 2510
>ref|XM_326752.1| Neurospora crassa OR74A hypothetical protein (NCU01260.1) partial mRNA Length = 6924 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 208 cggccacctcgagcagctccacctc 232 |||||||| |||||||||||||||| Sbjct: 2534 cggccaccgcgagcagctccacctc 2510
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 269 cgcgcggccgcggtcgcggaccacg 293 |||||||||||||||||||| |||| Sbjct: 2295634 cgcgcggccgcggtcgcggatcacg 2295658
>ref|NM_021495.1| Mus musculus poliovirus receptor-related 3 (Pvrl3), transcript variant alpha, mRNA Length = 2166 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 232 ccccggcccacccgctcgccc 252 ||||||||||||||||||||| Sbjct: 180 ccccggcccacccgctcgccc 160
>ref|XM_807967.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053508209.70) partial mRNA Length = 1098 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 214 cctcgagcagctccacctccc 234 ||||||||||||||||||||| Sbjct: 736 cctcgagcagctccacctccc 716
>gb|BC090071.1| Rattus norvegicus cDNA clone IMAGE:7111992, **** WARNING: chimeric clone **** Length = 2837 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 232 ccccggcccacccgctcgccc 252 ||||||||||||||||||||| Sbjct: 1416 ccccggcccacccgctcgccc 1396
>gb|BC053477.1| Mus musculus cDNA clone IMAGE:6433725 Length = 2075 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 232 ccccggcccacccgctcgccc 252 ||||||||||||||||||||| Sbjct: 2008 ccccggcccacccgctcgccc 2028
>emb|BX294015.1|NCB10N12 Neurospora crassa DNA linkage group V BAC contig B10N12 Length = 70199 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 208 cggccacctcgagcagctccacctc 232 |||||||| |||||||||||||||| Sbjct: 34842 cggccaccgcgagcagctccacctc 34866
>gb|AC011927.11| Homo sapiens chromosome 15, clone RP11-15O14, complete sequence Length = 162662 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 400 gggggcacaccacccgccaca 420 ||||||||||||||||||||| Sbjct: 157095 gggggcacaccacccgccaca 157115
>gb|AC032011.15| Homo sapiens chromosome 15, clone RP11-435J9, complete sequence Length = 201200 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 400 gggggcacaccacccgccaca 420 ||||||||||||||||||||| Sbjct: 30937 gggggcacaccacccgccaca 30957
>dbj|AK011949.1| Mus musculus 10 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2610301B19 product:poliovirus receptor-related 3, full insert sequence Length = 2151 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 232 ccccggcccacccgctcgccc 252 ||||||||||||||||||||| Sbjct: 183 ccccggcccacccgctcgccc 163
>gb|AC167670.1| Mus musculus BAC clone RP24-119K18 from chromosome 16, complete sequence Length = 200044 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 232 ccccggcccacccgctcgccc 252 ||||||||||||||||||||| Sbjct: 23588 ccccggcccacccgctcgccc 23608
>gb|AF195833.1|AF195833 Mus musculus cell adhesion molecule nectin-3 alpha mRNA, complete cds Length = 2166 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 232 ccccggcccacccgctcgccc 252 ||||||||||||||||||||| Sbjct: 180 ccccggcccacccgctcgccc 160
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 425 caccacgttctcggccatcac 445 ||||||||||||||||||||| Sbjct: 1963307 caccacgttctcggccatcac 1963287 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 382 catcggcgcccgtggtctgg 401 |||||||||||||||||||| Sbjct: 3630157 catcggcgcccgtggtctgg 3630138
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 202 cctgcccggccacctcgagcagct 225 |||||| ||||||||||||||||| Sbjct: 1977709 cctgccgggccacctcgagcagct 1977686
>ref|XM_467436.1| Oryza sativa (japonica cultivar-group), mRNA Length = 750 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 gagcacgcgccggcacgcca 333 |||||||||||||||||||| Sbjct: 514 gagcacgcgccggcacgcca 533
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 cgtcttcgcgccggcggcca 363 |||||||||||||||||||| Sbjct: 249829 cgtcttcgcgccggcggcca 249848
>ref|XM_470264.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 837 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 cctccccggcccacccgctc 248 |||||||||||||||||||| Sbjct: 635 cctccccggcccacccgctc 654
>ref|XM_470263.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1473 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 cctccccggcccacccgctc 248 |||||||||||||||||||| Sbjct: 209 cctccccggcccacccgctc 228
>ref|XM_415764.1| PREDICTED: Gallus gallus similar to hypothetical protein, MNCb-4760 (LOC417516), mRNA Length = 1920 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 tcgagcagctccacctcccc 235 |||||||||||||||||||| Sbjct: 490 tcgagcagctccacctcccc 509
>gb|AC096689.5| Oryza sativa chromosome 3 BAC OSJNBa0027J18 genomic sequence, complete sequence Length = 112892 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 cctccccggcccacccgctc 248 |||||||||||||||||||| Sbjct: 25070 cctccccggcccacccgctc 25089
>ref|NM_001001876.1| Gallus gallus basement membrane-specific heparan sulfate proteoglycan core protein (HSPG), mRNA Length = 12255 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 tggccctgcccggccacctc 217 |||||||||||||||||||| Sbjct: 11693 tggccctgcccggccacctc 11712
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 cctccccggcccacccgctc 248 |||||||||||||||||||| Sbjct: 29824391 cctccccggcccacccgctc 29824372 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 cctccccggcccacccgctc 248 |||||||||||||||||||| Sbjct: 3140577 cctccccggcccacccgctc 3140558 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 cctccccggcccacccgctc 248 |||||||||||||||||||| Sbjct: 3138721 cctccccggcccacccgctc 3138740
>emb|AL583882.6| Human DNA sequence from clone RP5-1098C18 on chromosome 1p36.23-36.33 Contains GSSs, STSs and a CpG island, complete sequence Length = 90582 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 cagctccacctccccggccc 240 |||||||||||||||||||| Sbjct: 81404 cagctccacctccccggccc 81423
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 cgccggcacgccagcccgcg 340 |||||||||||||||||||| Sbjct: 4413128 cgccggcacgccagcccgcg 4413147
>emb|CR555308.1| Azoarcus sp. EbN1 plasmid 2 Length = 223670 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 ccacgttctcggccatcacg 446 |||||||||||||||||||| Sbjct: 3938 ccacgttctcggccatcacg 3919
>gb|AC099401.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1134F05, complete sequence Length = 101799 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 cctccccggcccacccgctc 248 |||||||||||||||||||| Sbjct: 63590 cctccccggcccacccgctc 63571 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 cctccccggcccacccgctc 248 |||||||||||||||||||| Sbjct: 61734 cctccccggcccacccgctc 61753
>emb|AJ584653.1| Gallus gallus mRNA for basement membrane-specific heparan sulfate proteoglycan core protein precursor (HSPG gene) Length = 12255 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 tggccctgcccggccacctc 217 |||||||||||||||||||| Sbjct: 11693 tggccctgcccggccacctc 11712
>emb|CR857401.1| Pongo pygmaeus mRNA; cDNA DKFZp459F2222 (from clone DKFZp459F2222) Length = 2045 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 caatcctcttccccagatgc 33 |||||||||||||||||||| Sbjct: 40 caatcctcttccccagatgc 21
>gb|AC084361.19| Homo sapiens 12 BAC RP11-364C11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 172853 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 cagctccacctccccggccc 240 |||||||||||||||||||| Sbjct: 158039 cagctccacctccccggccc 158020
>gb|AC091394.2|AC091394 Homo sapiens chromosome 5 clone CTD-2231K23, complete sequence Length = 134928 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 gggggcacaccacccgccac 419 |||||||||||||||||||| Sbjct: 64692 gggggcacaccacccgccac 64673
>emb|BX950667.2| Gallus gallus finished cDNA, clone ChEST386h5 Length = 865 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 tcgagcagctccacctcccc 235 |||||||||||||||||||| Sbjct: 650 tcgagcagctccacctcccc 669
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 cctccccggcccacccgctc 248 |||||||||||||||||||| Sbjct: 29915813 cctccccggcccacccgctc 29915794 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 cctccccggcccacccgctc 248 |||||||||||||||||||| Sbjct: 3140688 cctccccggcccacccgctc 3140669 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 cctccccggcccacccgctc 248 |||||||||||||||||||| Sbjct: 3138832 cctccccggcccacccgctc 3138851
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 gagcacgcgccggcacgcca 333 |||||||||||||||||||| Sbjct: 29500195 gagcacgcgccggcacgcca 29500176
>gb|AC104770.10| Homo sapiens chromosome 17, clone RP11-960B9, complete sequence Length = 188574 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 aatggcatcgtcctgcctga 159 |||||||||||||||||||| Sbjct: 95165 aatggcatcgtcctgcctga 95184
>dbj|AP003983.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1038_A06 Length = 147836 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 gagcacgcgccggcacgcca 333 |||||||||||||||||||| Sbjct: 95225 gagcacgcgccggcacgcca 95206
>dbj|AK063345.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-114-B07, full insert sequence Length = 1586 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 cctccccggcccacccgctc 248 |||||||||||||||||||| Sbjct: 46 cctccccggcccacccgctc 65
>emb|Z73582.1|SCYPL226W S.cerevisiae chromosome XVI reading frame ORF YPL226w Length = 4838 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 ttttacagattcaggaacct 136 |||||||||||||||||||| Sbjct: 1700 ttttacagattcaggaacct 1681
>gb|DQ332051.1| Synthetic construct Saccharomyces cerevisiae clone FLH148235.01X NEW1 gene, complete sequence Length = 3591 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 ttttacagattcaggaacct 136 |||||||||||||||||||| Sbjct: 1101 ttttacagattcaggaacct 1082
>gb|AC154382.1| Mus musculus BAC clone RP23-51D17 from 13, complete sequence Length = 180348 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 400 gggggcacaccacccgccac 419 |||||||||||||||||||| Sbjct: 51440 gggggcacaccacccgccac 51459 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,156,316 Number of Sequences: 3902068 Number of extensions: 3156316 Number of successful extensions: 62519 Number of sequences better than 10.0: 61 Number of HSP's better than 10.0 without gapping: 63 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61298 Number of HSP's gapped (non-prelim): 1221 length of query: 470 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 448 effective length of database: 17,147,199,772 effective search space: 7681945497856 effective search space used: 7681945497856 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
