ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart31g07 |
|---|---|
| Clone Library Name | barley_pub |
>GME1_ORYSA (Q338B5) GDP-mannose 3,5-epimerase 1 (EC 5.1.3.18) (GDP-Man| 3,5-epimerase 1) (OsGME-1) Length = 378 Score = 212 bits (540), Expect = 4e-55 Identities = 102/111 (91%), Positives = 108/111 (97%) Frame = -1 Query: 529 VNIGSDEMVSMNEMAEIVLGFEDKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMKLK 350 VNIGSDEMVSMNEMAEI+L FED++LPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMKLK Sbjct: 268 VNIGSDEMVSMNEMAEIILSFEDRELPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMKLK 327 Query: 349 DGLRFTYFWIKEQIEKERTEGKDVARYGSSKVVSTQAPVQLGSLRAADGKE 197 DGLRFTYFWIKEQIEKE+T+G D+A YGSSKVVSTQAPVQLGSLRAADGKE Sbjct: 328 DGLRFTYFWIKEQIEKEKTQGVDIAGYGSSKVVSTQAPVQLGSLRAADGKE 378
>GME2_ORYSA (Q2R1V8) GDP-mannose 3,5-epimerase 2 (EC 5.1.3.18) (GDP-Man| 3,5-epimerase 2) Length = 371 Score = 204 bits (518), Expect = 2e-52 Identities = 98/111 (88%), Positives = 105/111 (94%) Frame = -1 Query: 529 VNIGSDEMVSMNEMAEIVLGFEDKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMKLK 350 VNIGSDEMVSMNEMAEIVL FE+K+LPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTM+LK Sbjct: 261 VNIGSDEMVSMNEMAEIVLSFENKQLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMRLK 320 Query: 349 DGLRFTYFWIKEQIEKERTEGKDVARYGSSKVVSTQAPVQLGSLRAADGKE 197 DGLR TYFWIKEQ+EKE+ EG D++ YGSSKVV TQAPVQLGSLRAADGKE Sbjct: 321 DGLRITYFWIKEQLEKEKAEGVDLSAYGSSKVVQTQAPVQLGSLRAADGKE 371
>GME_ARATH (Q93VR3) GDP-mannose 3,5-epimerase (EC 5.1.3.18) (GDP-Man| 3,5-epimerase) Length = 377 Score = 200 bits (508), Expect = 2e-51 Identities = 96/111 (86%), Positives = 103/111 (92%) Frame = -1 Query: 529 VNIGSDEMVSMNEMAEIVLGFEDKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMKLK 350 VNIGSDEMVSMNEMAE+VL FE+KKLPIHHIPGPEGVRGRNSDN LIKEKLGWAP M+LK Sbjct: 267 VNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPEGVRGRNSDNNLIKEKLGWAPNMRLK 326 Query: 349 DGLRFTYFWIKEQIEKERTEGKDVARYGSSKVVSTQAPVQLGSLRAADGKE 197 +GLR TYFWIKEQIEKE+ +G DV+ YGSSKVV TQAPVQLGSLRAADGKE Sbjct: 327 EGLRITYFWIKEQIEKEKAKGSDVSLYGSSKVVGTQAPVQLGSLRAADGKE 377
>FCL2_ARATH (Q9LMU0) Putative GDP-L-fucose synthase 2 (EC 1.1.1.271)| (GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase 2) (AtGER2) Length = 328 Score = 47.4 bits (111), Expect = 2e-05 Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 3/81 (3%) Frame = -1 Query: 529 VNIGSDEMVSMNEMAEIV---LGFEDKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTM 359 VN+GS V++ E+AE+V +GF+ K + P+G + D++ + LGW P + Sbjct: 250 VNVGSGVEVTIKELAELVKEVVGFKGKL--VWDTTKPDGTPRKLMDSSKLAS-LGWTPKI 306 Query: 358 KLKDGLRFTYFWIKEQIEKER 296 LKDGL TY W E + +++ Sbjct: 307 SLKDGLSQTYEWYLENVVQKK 327
>FCL1_ORYSA (Q67WR2) Probable GDP-L-fucose synthase 1 (EC 1.1.1.271)| (GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase 1) Length = 328 Score = 47.0 bits (110), Expect = 3e-05 Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 3/77 (3%) Frame = -1 Query: 529 VNIGSDEMVSMNEMAEIV---LGFEDKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTM 359 VN+GS V++ E+AE+V +GF+ K + P+G + D++ I+E +GW P + Sbjct: 250 VNVGSGSEVTIKELAELVKEVVGFQGKL--VWDSSKPDGTPRKLMDSSKIQE-MGWKPKV 306 Query: 358 KLKDGLRFTYFWIKEQI 308 LK+GL TY W E + Sbjct: 307 PLKEGLVETYKWYVENV 323
>FCL1_ARATH (O49213) GDP-L-fucose synthase 1 (EC 1.1.1.271)| (GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase 1) (AtGER1) (AtFX) Length = 312 Score = 44.7 bits (104), Expect = 2e-04 Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 3/77 (3%) Frame = -1 Query: 529 VNIGSDEMVSMNEMAEIV---LGFEDKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTM 359 VNIGS + V++ E+AE+V +GFE K P+G + D++ + LGW P + Sbjct: 236 VNIGSGQEVTIRELAELVKEVVGFEGKLG--WDCTKPDGTPRKLMDSSKLAS-LGWTPKV 292 Query: 358 KLKDGLRFTYFWIKEQI 308 L+DGL TY W + + Sbjct: 293 SLRDGLSQTYDWYLKNV 309
>FCL2_ORYSA (Q67WR5) Putative GDP-L-fucose synthase 2 (EC 1.1.1.271)| (GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase 2) Length = 347 Score = 42.4 bits (98), Expect = 8e-04 Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 2/75 (2%) Frame = -1 Query: 529 VNIGSDEMVSMNEMAEIVLGFEDKK-LPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMKL 353 VN+GS E V++ E+AE V G + + PEGV R D+ ++ KLGW P + L Sbjct: 266 VNVGSGEEVTVRELAEAVRGVVGYEGVVAWDAARPEGVARRVVDSGRMR-KLGWEPRVAL 324 Query: 352 KDGLRFTY-FWIKEQ 311 +DG++ Y F+++ + Sbjct: 325 RDGIQDLYRFYLRHE 339
>GALE_METJA (Q57664) Putative UDP-glucose 4-epimerase (EC 5.1.3.2)| (Galactowaldenase) (UDP-galactose 4-epimerase) Length = 305 Score = 35.4 bits (80), Expect = 0.097 Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 3/74 (4%) Frame = -1 Query: 529 VNIGSDEMVSMNEMAEIV---LGFEDKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTM 359 VNIG+ + S+NE+ +I+ +GF + + + EG R + E LGW P + Sbjct: 230 VNIGTGKETSVNELFDIIKHEIGFRGEAI---YDKPREGEVYRIYLDIKKAESLGWKPEI 286 Query: 358 KLKDGLRFTYFWIK 317 LK+G++ W+K Sbjct: 287 DLKEGIKRVVNWMK 300
>UXS1_BRARE (Q6GMI9) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)| (UDP-glucuronate decarboxylase 1) (UXS-1) Length = 418 Score = 35.0 bits (79), Expect = 0.13 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 1/78 (1%) Frame = -1 Query: 529 VNIGSDEMVSMNEMAEIVLGFEDKKLPIHHIP-GPEGVRGRNSDNTLIKEKLGWAPTMKL 353 VN+G+ E ++ E A+++ + I +P + + R D K LGW P + L Sbjct: 319 VNLGNPEEHTILEFAQLIKSLVASRSHIQFLPEAQDDPQRRRPDIRKAKLLLGWEPVVPL 378 Query: 352 KDGLRFTYFWIKEQIEKE 299 ++GL T + ++E + Sbjct: 379 EEGLNKTIQYFSRELEHQ 396
>GFRA3_MOUSE (O35118) GDNF family receptor alpha-3 precursor (GFR-alpha-3)| Length = 397 Score = 31.6 bits (70), Expect = 1.4 Identities = 17/51 (33%), Positives = 21/51 (41%) Frame = -1 Query: 154 PNCPPIGSFVAKTLENCTACPAYPMCDSADSSAPVHCHPH*LLSSCQQNSS 2 PNC + SF C A P+C S HCHP +L +C S Sbjct: 243 PNCLDLRSF----------CRADPLCRSRLMDFQTHCHPMDILGTCATEQS 283
>RMLB_STRMU (P95780) dTDP-glucose 4,6-dehydratase (EC 4.2.1.46)| Length = 348 Score = 31.6 bits (70), Expect = 1.4 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 8/86 (9%) Frame = -1 Query: 523 IGSDEMVSMNEMAEIVLG-FEDKKLPIHHIPGPEGVRGRNS-DNTLIKEKLGWAPTM-KL 353 IG+D + E+ E++L K H+ G R + D+T ++E+LGW P Sbjct: 252 IGADGEKNNKEVLELILEKMSQPKNAYDHVTDRAGHDLRYAIDSTKLREELGWKPQFTNF 311 Query: 352 KDGLRFTYFWIKE-----QIEKERTE 290 ++GL T W E + EKE E Sbjct: 312 EEGLEDTIKWYTEHEDWWKAEKEAVE 337
>UXS1_RAT (Q5PQX0) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)| (UDP-glucuronate decarboxylase 1) (UGD) (UXS-1) Length = 420 Score = 31.2 bits (69), Expect = 1.8 Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 1/76 (1%) Frame = -1 Query: 529 VNIGSDEMVSMNEMAEIVLGFEDKKLPIHHIP-GPEGVRGRNSDNTLIKEKLGWAPTMKL 353 VN+G+ E ++ E A+++ I + + + R D K LGW P + L Sbjct: 321 VNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPL 380 Query: 352 KDGLRFTYFWIKEQIE 305 ++GL + ++++E Sbjct: 381 EEGLNKAIHYFRKELE 396
>UXS1_PONPY (Q5R885) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)| (UDP-glucuronate decarboxylase 1) (UGD) (UXS-1) Length = 420 Score = 31.2 bits (69), Expect = 1.8 Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 1/76 (1%) Frame = -1 Query: 529 VNIGSDEMVSMNEMAEIVLGFEDKKLPIHHIP-GPEGVRGRNSDNTLIKEKLGWAPTMKL 353 VN+G+ E ++ E A+++ I + + + R D K LGW P + L Sbjct: 321 VNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPL 380 Query: 352 KDGLRFTYFWIKEQIE 305 ++GL + ++++E Sbjct: 381 EEGLNKAIHYFRKELE 396
>UXS1_MOUSE (Q91XL3) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)| (UDP-glucuronate decarboxylase 1) (UGD) (UXS-1) Length = 420 Score = 31.2 bits (69), Expect = 1.8 Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 1/76 (1%) Frame = -1 Query: 529 VNIGSDEMVSMNEMAEIVLGFEDKKLPIHHIP-GPEGVRGRNSDNTLIKEKLGWAPTMKL 353 VN+G+ E ++ E A+++ I + + + R D K LGW P + L Sbjct: 321 VNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPL 380 Query: 352 KDGLRFTYFWIKEQIE 305 ++GL + ++++E Sbjct: 381 EEGLNKAIHYFRKELE 396
>UXS1_HUMAN (Q8NBZ7) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)| (UDP-glucuronate decarboxylase 1) (UGD) (UXS-1) Length = 420 Score = 31.2 bits (69), Expect = 1.8 Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 1/76 (1%) Frame = -1 Query: 529 VNIGSDEMVSMNEMAEIVLGFEDKKLPIHHIP-GPEGVRGRNSDNTLIKEKLGWAPTMKL 353 VN+G+ E ++ E A+++ I + + + R D K LGW P + L Sbjct: 321 VNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPL 380 Query: 352 KDGLRFTYFWIKEQIE 305 ++GL + ++++E Sbjct: 381 EEGLNKAIHYFRKELE 396
>STRE_STRGR (P29782) dTDP-glucose 4,6-dehydratase (EC 4.2.1.46)| Length = 328 Score = 30.8 bits (68), Expect = 2.4 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 2/70 (2%) Frame = -1 Query: 526 NIGSDEMVSMNEMAEIVLGFEDKKL-PIHHIPGPEGVRGRNS-DNTLIKEKLGWAPTMKL 353 NIG +S E+ ++L + ++ +G R + D+T I+ +LG+AP + L Sbjct: 240 NIGGGATLSNKELVGLLLEAAGADWGSVEYVEDRKGHDRRYAVDSTRIQRELGFAPAVDL 299 Query: 352 KDGLRFTYFW 323 DGL T W Sbjct: 300 ADGLAATVAW 309
>FCL_ECOLI (P32055) GDP-L-fucose synthetase (EC 1.1.1.271)| (GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase) Length = 321 Score = 30.8 bits (68), Expect = 2.4 Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 3/81 (3%) Frame = -1 Query: 529 VNIGSDEMVSMNEMAEI---VLGFEDKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTM 359 +N+G+ ++ E+A+ V+G++ + + P+G + D T + + LGW + Sbjct: 243 INVGTGVDCTIRELAQTIAKVVGYKGRV--VFDASKPDGTPRKLLDVTRLHQ-LGWYHEI 299 Query: 358 KLKDGLRFTYFWIKEQIEKER 296 L+ GL TY W E ++ R Sbjct: 300 SLEAGLASTYQWFLENQDRFR 320
>GFRA3_HUMAN (O60609) GDNF family receptor alpha-3 precursor (GFR-alpha-3)| Length = 400 Score = 30.8 bits (68), Expect = 2.4 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 2/53 (3%) Frame = -1 Query: 154 PNC--PPIGSFVAKTLENCTACPAYPMCDSADSSAPVHCHPH*LLSSCQQNSS 2 PNC PP+ LE C + P+C S HCHP +L +C S Sbjct: 237 PNCALPPVAP---NCLELRRLCFSDPLCRSRLVDFQTHCHPMDILGTCATEQS 286
>YCL2_ECO11 (Q04871) Hypothetical 37.6 kDa protein in cld 5'region (ORF2)| Length = 334 Score = 30.8 bits (68), Expect = 2.4 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 5/76 (6%) Frame = -1 Query: 526 NIGSD---EMVSMNEMAEIVLGFEDKK--LPIHHIPGPEGVRGRNSDNTLIKEKLGWAPT 362 NIG+ E++ + E LG E KK LP+ P V ++D + E +G+ P Sbjct: 259 NIGNSSPVELMDYIQALEDALGIEAKKNMLPLQ----PGDVLETSADTKALYEVIGFTPE 314 Query: 361 MKLKDGLRFTYFWIKE 314 +KDG++ W ++ Sbjct: 315 TTVKDGVKNFVNWYRD 330
>ALCR_EMENI (P21228) Regulatory protein alcR| Length = 821 Score = 30.4 bits (67), Expect = 3.1 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%) Frame = -2 Query: 132 PSLRKHLRIAQPALPTPCVIQQILVLLFIVTPIN--YYHRVNRI 7 P H +I+QPA PC +Q L TP+ Y RV ++ Sbjct: 566 PDHESHTQISQPAARWPCTYEQAAAALSSATPVKVLLYRRVTQL 609
>RY44_DROME (Q24498) Ryanodine receptor 44F| Length = 5127 Score = 30.4 bits (67), Expect = 3.1 Identities = 16/35 (45%), Positives = 18/35 (51%) Frame = +2 Query: 155 QWHNRPGVDMHSCLLLAVSRAEGAQLHRCLCGHHL 259 Q R G D H LL + AEGA+L C HHL Sbjct: 1974 QAFEREGKDEHRKGLLTMKMAEGAKLQMCYLLHHL 2008
>PANC_NEIMA (P57035) Pantoate--beta-alanine ligase (EC 6.3.2.1) (Pantothenate| synthetase) (Pantoate-activating enzyme) Length = 278 Score = 30.0 bits (66), Expect = 4.1 Identities = 16/45 (35%), Positives = 24/45 (53%) Frame = -1 Query: 331 YFWIKEQIEKERTEGKDVARYGSSKVVSTQAPVQLGSLRAADGKE 197 Y W+ + +E R + +VAR G K+V A +LG+ R D E Sbjct: 231 YGWVVDYVEIRRVDTLEVARAGDKKLV-VLAAARLGTTRLIDNLE 274
>YNR6_YEAST (P53882) Hypothetical 67.4 kDa protein in RPS3-PSD1 intergenic| region Length = 636 Score = 29.6 bits (65), Expect = 5.3 Identities = 24/87 (27%), Positives = 38/87 (43%) Frame = +3 Query: 264 DPYRATSFPSVLSFSICSLIQK*VNLRPSLSFIVGAQPSFSLMRVLSELRPRTPSGPGMW 443 D Y + P+ S+SI + PS+S P S + SE T + P + Sbjct: 101 DTYSSQYDPATSSYSI---------ITPSMSIFSSTSPMSSSSSITSEWSSLTSTTPTLS 151 Query: 444 WMGSFLSSKPRTISAISFMLTISSLPM 524 + LSS ++S+ S +L SSL + Sbjct: 152 SSATSLSSSWSSLSSPSSLLVSSSLSL 178
>Y2889_PHOPR (Q6LN94) UPF0247 protein PBPRA2889| Length = 156 Score = 29.6 bits (65), Expect = 5.3 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 10/72 (13%) Frame = -1 Query: 460 KKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTYF------W----IKEQ 311 K +P+ I P G RG+N+D I +K G A + G R W + +Q Sbjct: 29 KDMPLELIEIPAGKRGKNADIARILQKEGEAMLATVAKGNRIVTLDIPGKRWDTGQLAQQ 88 Query: 310 IEKERTEGKDVA 275 ++ + +G+DV+ Sbjct: 89 LDSWKLDGRDVS 100
>Y1298_PHOLL (Q7N760) UPF0247 protein plu1298| Length = 156 Score = 29.3 bits (64), Expect = 7.0 Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 16/85 (18%) Frame = -1 Query: 481 IVLGFED------KKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTYF-- 326 I GF D K +P I P G RG+N+D I EK G + G R Sbjct: 16 IQAGFTDYLRRFPKDMPFDLIEIPAGKRGKNADIKRILEKEGEQMLAAVSKGSRIVTLDI 75 Query: 325 ----W----IKEQIEKERTEGKDVA 275 W + +Q+E + +G+DV+ Sbjct: 76 PGSRWETPQLAQQLEHWKRDGRDVS 100
>ARLY_PROMA (Q7VEK0) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase)| (ASAL) Length = 462 Score = 29.3 bits (64), Expect = 7.0 Identities = 16/48 (33%), Positives = 27/48 (56%) Frame = -1 Query: 370 APTMKLKDGLRFTYFWIKEQIEKERTEGKDVARYGSSKVVSTQAPVQL 227 A T+ L++GL F+ +KE +E + + DVA Y SK + + Q+ Sbjct: 341 AMTILLEEGLEFSLERLKETVEADFSNATDVADYLVSKNIPFREAYQI 388
>NOLK_AZOCA (P33217) Nodulation protein nolK| Length = 312 Score = 29.3 bits (64), Expect = 7.0 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Frame = -1 Query: 529 VNIGSD-EMVSMNEMAEIVLGFEDKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMKL 353 V +G D ++ + V+G+ + ++ + P G+R + D T + LGW P L Sbjct: 237 VGVGKDLSVLEYYSLVARVIGWSGEF--VYDLNRPVGMRSKLMDITHLTA-LGWVPERSL 293 Query: 352 KDGLRFTY 329 + G+R TY Sbjct: 294 EGGIRSTY 301
>MA1A2_HUMAN (O60476) Mannosyl-oligosaccharide 1,2-alpha-mannosidase IB (EC| 3.2.1.113) (Processing alpha-1,2-mannosidase IB) (Alpha-1,2-mannosidase IB) (Mannosidase alpha class 1A member 2) Length = 641 Score = 29.3 bits (64), Expect = 7.0 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 6/80 (7%) Frame = -1 Query: 466 EDKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRF------TYFWIKEQIE 305 E+K LP IP G+RG + ++ I+EK K+K+ ++ TY W ++ Sbjct: 152 ENKPLPPVPIPNLVGIRGGDPEDNDIREK-----REKIKEMMKHAWDNYRTYGWGHNELR 206 Query: 304 KERTEGKDVARYGSSKVVST 245 +G +GSS++ +T Sbjct: 207 PIARKGHSPNIFGSSQMGAT 226
>SO1C1_HUMAN (Q9NYB5) Solute carrier organic anion transporter family member 1C1| (Solute carrier family 21 member 14) (Organic anion transporter F) (OATP-F) (Organic anion-transporting polypeptide 14) (Organic anion transporter polypeptide-related protein Length = 712 Score = 29.3 bits (64), Expect = 7.0 Identities = 11/38 (28%), Positives = 19/38 (50%) Frame = +3 Query: 408 LRPRTPSGPGMWWMGSFLSSKPRTISAISFMLTISSLP 521 + P+ P G WW+G ++ ++A+ F SLP Sbjct: 263 ITPKDPQWVGAWWLGYLIAGIISLLAAVPFWYLPKSLP 300
>UXS1_XENTR (Q6DF08) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)| (UDP-glucuronate decarboxylase 1) (UXS-1) Length = 421 Score = 29.3 bits (64), Expect = 7.0 Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 1/78 (1%) Frame = -1 Query: 529 VNIGSDEMVSMNEMAEIVLGFEDKKLPIHHIP-GPEGVRGRNSDNTLIKEKLGWAPTMKL 353 VN+G+ + S+ + A ++ I + + + R D K LGW P + L Sbjct: 322 VNLGNPQEHSIVQFARLIKQLVGSGGEISFLSEAQDDPQRRKPDIRKAKLLLGWEPVVPL 381 Query: 352 KDGLRFTYFWIKEQIEKE 299 ++GL T + ++++E + Sbjct: 382 EEGLNKTIHYFRKELEHQ 399
>EMR1_MOUSE (Q61549) EGF-like module-containing mucin-like hormone| receptor-like 1 precursor (Cell surface glycoprotein EMR1) (EMR1 hormone receptor) (Cell surface glycoprotein F4/80) Length = 931 Score = 29.3 bits (64), Expect = 7.0 Identities = 13/44 (29%), Positives = 22/44 (50%) Frame = +2 Query: 77 THGVGRAGCAILKCFRNEGSDRWAIGQWHNRPGVDMHSCLLLAV 208 T+ +GRA C+ L+ F + W +G N D+ CL + + Sbjct: 99 TNILGRAKCSCLRGFSSSTGKDWILGSLDNFLCADVDECLTIGI 142
>YQAK_BACSU (P45908) Hypothetical protein yqaK| Length = 284 Score = 28.9 bits (63), Expect = 9.1 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = -1 Query: 379 LGWAPTMKLKDGLRFTYFWIKEQIEKER 296 +G+A +L +G R T +W K Q+EK + Sbjct: 158 IGYAAYFELINGFRKTVYWTKAQVEKHK 185
>Y033_HAEIN (P44470) UPF0247 protein HI0033| Length = 155 Score = 28.9 bits (63), Expect = 9.1 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 16/84 (19%) Frame = -1 Query: 481 IVLGFED------KKLPIHHIPGPEGVRGRNSDNTLIKEKLGWA----------PTMKLK 350 + GFE+ K +P I P G RG+N+D I E+ G A T+ + Sbjct: 16 VTTGFEEYQRRFPKDMPFELIEIPAGKRGKNADIKRILEQEGKAMLAACGKGKVVTLDI- 74 Query: 349 DGLRFTYFWIKEQIEKERTEGKDV 278 G +T + EQ+E + +G+DV Sbjct: 75 PGKPWTTPQLAEQLEAWKNDGRDV 98
>POL_OMVVS (P16901) Pol polyprotein [Contains: Protease (EC 3.4.23.-)| (Retropepsin); Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23) (dUTPase); Integrase (IN)] Length = 1086 Score = 28.9 bits (63), Expect = 9.1 Identities = 22/80 (27%), Positives = 36/80 (45%) Frame = -1 Query: 523 IGSDEMVSMNEMAEIVLGFEDKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMKLKDG 344 +G D M + ++ I+ E+KK+PI + EG +G + W T + +G Sbjct: 106 LGRDNMAKL-DIGIIMANLEEKKIPITQVKLKEGCKGPHIAQ--------WPLTQEKLEG 156 Query: 343 LRFTYFWIKEQIEKERTEGK 284 L KE ++K EGK Sbjct: 157 L-------KEIVDKLEKEGK 169
>PANC_NEIMB (P57036) Pantoate--beta-alanine ligase (EC 6.3.2.1) (Pantothenate| synthetase) (Pantoate-activating enzyme) Length = 278 Score = 28.9 bits (63), Expect = 9.1 Identities = 20/67 (29%), Positives = 31/67 (46%) Frame = -1 Query: 397 TLIKEKLGWAPTMKLKDGLRFTYFWIKEQIEKERTEGKDVARYGSSKVVSTQAPVQLGSL 218 +L++ L +A K Y W+ + +E R + +VAR G K+V A LG+ Sbjct: 209 SLVQGSLDYAGLEKRAVQSLTEYGWVVDYVEIRRADTLEVARAGDKKLV-VLAAACLGTT 267 Query: 217 RAADGKE 197 R D E Sbjct: 268 RLIDNLE 274 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,145,078 Number of Sequences: 219361 Number of extensions: 1574043 Number of successful extensions: 5320 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 5074 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5314 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4027872870 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
