>PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PolyA-binding protein II) (PABII)
           (Polyadenylate-binding nuclear protein 1) (Nuclear
           poly(A)-binding protein 1)
          Length = 305

 Score = 37.0 bits (84), Expect = 0.029
 Identities = 21/71 (29%), Positives = 32/71 (45%)
 Frame = +1

Query: 166 ESLPVPVKPAATPGKKTGLGLPAPVADDDRAGCTSGAAGADAVVLEPELTEPDLHVRRGD 345
           E  P P  P   PG   G G P    +++ +G   G  G D  + +PEL      VR  +
Sbjct: 71  EEPPRPRAPPGAPGPGPGSGAPGNQEEEEESGLVEGDPG-DGAIEDPELEAIKARVREME 129

Query: 346 EQLGGLRRLED 378
           E+   L+ L++
Sbjct: 130 EEAEKLKELQN 140

>PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PolyA binding protein II) (PABII)
           (Polyadenylate-binding nuclear protein 1) (Nuclear
           poly(A)-binding protein 1)
          Length = 305

 Score = 36.6 bits (83), Expect = 0.037
 Identities = 21/71 (29%), Positives = 31/71 (43%)
 Frame = +1

Query: 166 ESLPVPVKPAATPGKKTGLGLPAPVADDDRAGCTSGAAGADAVVLEPELTEPDLHVRRGD 345
           E  P P  P   PG   G G P    +++  G   G  G D  + +PEL      VR  +
Sbjct: 71  EEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPG-DGAIEDPELEAIKARVREME 129

Query: 346 EQLGGLRRLED 378
           E+   L+ L++
Sbjct: 130 EEAEKLKELQN 140

>PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PolyA binding protein II) (PABII)
           (Polyadenylate-binding nuclear protein 1) (Nuclear
           poly(A)-binding protein 1)
          Length = 301

 Score = 34.3 bits (77), Expect = 0.19
 Identities = 20/71 (28%), Positives = 30/71 (42%)
 Frame = +1

Query: 166 ESLPVPVKPAATPGKKTGLGLPAPVADDDRAGCTSGAAGADAVVLEPELTEPDLHVRRGD 345
           E  P P  P   PG   G G P    +++  G      G D  + +PEL      VR  +
Sbjct: 67  EEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEADPG-DGAIEDPELEAIKARVREME 125

Query: 346 EQLGGLRRLED 378
           E+   L+ L++
Sbjct: 126 EEAEKLKELQN 136

>GLNE_CAUCR (Q9A4S7) Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42)|
           ([Glutamate--ammonia-ligase] adenylyltransferase)
           (Glutamine-synthetase adenylyltransferase) (ATase)
          Length = 986

 Score = 33.1 bits (74), Expect = 0.41
 Identities = 38/150 (25%), Positives = 60/150 (40%), Gaps = 30/150 (20%)
 Frame = +1

Query: 100 PRDSRRSTDLADNRRGNKITRVESLPVPVKP--AATP-----GKKTGLGLPAPVADDDRA 258
           P+ + R+ +    R G  + +V++    + P  AA+P      ++ G  LP  +  D   
Sbjct: 45  PKAAERAYEAIAKRAGEAMGQVDAAWGSLAPVFAASPYLAGLARRDGKRLPRILGGDPGE 104

Query: 259 GCTSGAAGADAVVLEPELT---------EPDLHVRRGDEQLGGLRRLEDLHGA------- 390
              +  A A+AV  EP+           + DLH+      LGG+  L+ + GA       
Sbjct: 105 TLAAILAAAEAVAAEPDFETARRVLRELKADLHLLTAISDLGGVWDLDQVTGALTRFADA 164

Query: 391 -LHGAQPQRV------GPGDHCADAADEPA 459
            LH A  Q V      G   H  D +  PA
Sbjct: 165 VLHAALAQAVRQEVSRGALTHVGDGSAGPA 194

>WNK2_HUMAN (Q9Y3S1) Serine/threonine-protein kinase WNK2 (EC 2.7.11.1) (Protein|
            kinase with no lysine 2) (Protein kinase,
            lysine-deficient 2)
          Length = 2297

 Score = 32.3 bits (72), Expect = 0.71
 Identities = 22/49 (44%), Positives = 24/49 (48%)
 Frame = +1

Query: 172  LPVPVKPAATPGKKTGLGLPAPVADDDRAGCTSGAAGADAVVLEPELTE 318
            LP    PAATPG +  LG PAP A D  A   +      A VL P L E
Sbjct: 1009 LPEQAAPAATPGSQILLGHPAPYAVDVAAQVPT-VPVPPAAVLSPPLPE 1056

>PCGF6_MOUSE (Q99NA9) Polycomb group RING finger protein 6 (RING finger protein|
           134) (Mel18 and Bmi1-like RING finger)
          Length = 353

 Score = 32.0 bits (71), Expect = 0.92
 Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
 Frame = +1

Query: 121 TDLADNRRGNKITRVESLPVPVKPAATPGKKTGLGLPAPVADDDRAGCTSGAAGADAVVL 300
           TD  +N+R ++  R  ++P P  P   P       +PAP A ++       A  A     
Sbjct: 6   TDATENKRASEAKRASAMPPP--PPPPPPISPPALIPAPAAGEEGPASLGQAGAAGCSRS 63

Query: 301 EPELTEPDLHVRRGDEQLGGLR-RLED 378
            P   EP       +  LG LR R ED
Sbjct: 64  RPPALEP-------ERSLGRLRGRFED 83

>SN1L2_PONPY (Q5REX1) Serine/threonine-protein kinase SNF1-like kinase 2 (EC|
           2.7.11.1)
          Length = 925

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 19/67 (28%), Positives = 32/67 (47%)
 Frame = +2

Query: 122 PIWRTIVAATRLQEWKASLSQSNQQLHLEKKPGWACRRRLPMMTELAARQEPPAPTPSYL 301
           P+   +  ++   ++   LSQ  Q++ L+  P  +  R  P+ T+L  +Q PP P P   
Sbjct: 773 PLSPVLEPSSEQMQYSPFLSQY-QEMQLQPLPSTSSPRAAPLPTQLQQQQPPPPPPP--- 828

Query: 302 SPNSRNP 322
            P  R P
Sbjct: 829 -PPPRQP 834

>IF2_SYMTH (Q67P86) Translation initiation factor IF-2|
          Length = 1044

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = +1

Query: 178 VPVKPAATPGKKTGLGLPAPVADDDRAGCTSGAAG 282
           VPVKPAA  G K+GLGLP    +    G   G +G
Sbjct: 312 VPVKPAA--GGKSGLGLPTRPGEKAADGARGGGSG 344

>CHD9_MOUSE (Q8BYH8) Chromodomain-helicase-DNA-binding protein 9 (EC 3.6.1.-)|
            (ATP-dependent helicase CHD9) (CHD-9) (Peroxisomal
            proliferator-activated receptor A-interacting complex 320
            kDa protein) (PPAR-alpha-interacting complex protein 320
            kDa)
          Length = 2885

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 102  ARQPSIHRSGGQSSRQQDYKSGKPPCPSQTSS 197
            +++P +H+ G QSS   D  S +  C S++SS
Sbjct: 2117 SKKPRVHKRGSQSSSDSDSDSARSSCSSRSSS 2148

>NUCL_XENLA (P20397) Nucleolin (Protein C23)|
          Length = 650

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 22/82 (26%), Positives = 30/82 (36%)
 Frame = +1

Query: 106 DSRRSTDLADNRRGNKITRVESLPVPVKPAATPGKKTGLGLPAPVADDDRAGCTSGAAGA 285
           DS    D+ ++   ++   V     P K  ATP K T    P   A   + G T    G 
Sbjct: 26  DSEEEEDMEEDDSSDEEVEVPVKKTPAKKTATPAKAT----PGKAATPGKKGATPAKNGK 81

Query: 286 DAVVLEPELTEPDLHVRRGDEQ 351
            A   E E  E D      D++
Sbjct: 82  QAKKQESEEEEDDSDEEAEDQK 103

>Y1998_PARUW (Q6M9M7) Hypothetical RNA methyltransferase pc1998 (EC 2.1.1.-)|
          Length = 383

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 113 VDPPIWRTIVAATRLQEWKASLSQSNQQLHLEKKPGWACRRRL 241
           V+PPIWR ++     + +K +L   N  LH     GW CR +L
Sbjct: 27  VEPPIWREVI-----ENFKETL---NPILHQGTLTGWRCRAKL 61

>ARNT_DROME (O15945) Aryl hydrocarbon receptor nuclear translocator homolog|
           (dARNT) (Protein tango) (Hypoxia-inducible factor 1
           beta)
          Length = 644

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
 Frame = +3

Query: 57  QQHALTRPSYDETLTARQPS----IHRSGGQSSRQQD----YKSGKPPCPSQTSSYTWKK 212
           QQ       Y +T  AR PS       S G  +RQQ     Y++G PP P+    + W++
Sbjct: 523 QQPVTEGYQYQQTSPARSPSGPTYTQLSAGNGNRQQAQPGAYQAGPPPPPNAPGMWDWQQ 582

>TRI11_HUMAN (Q96F44) Tripartite motif protein 11 (EC 6.3.2.-) (RING finger|
           protein 92) (BIA1 protein)
          Length = 468

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 233 RRLPMMTELAARQEPPAPTPSYLSPNSRNPI 325
           R L  M E+A R  PP+P P  + P  R P+
Sbjct: 69  RPLAKMAEMARRLHPPSPVPQGVCPAHREPL 99

>NR1H2_BOVIN (Q5BIS6) Oxysterols receptor LXR-beta|
          Length = 455

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = +1

Query: 181 PVKPAATPGKKTGLGLPAPVADDDRAGCTSGAAGADAVVLEPELTEPDLHVRRG 342
           P  P+++PG K     P P   D     T GA  A  VV+     EP+   ++G
Sbjct: 18  PSTPSSSPGGKEDGPEPCPGGADPDVPSTDGADSASVVVILDTAEEPERKRKKG 71

>CBBY_RHOCA (O33513) Protein cbbY|
          Length = 227

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
 Frame = +1

Query: 217 GLGLPAPVA---DDDRAGCTSGAAGADAVVLEPELTEPDLHVRRGDEQLGGLRRLEDLHG 387
           GLGLP       +D RAG  S  A    VVL P          RGD+      R+ DL  
Sbjct: 164 GLGLPPAACLAFEDSRAGLASARAAGLRVVLTPS------EYTRGDDFSAADWRIPDLSA 217

Query: 388 ALHGAQPQ 411
           A   A P+
Sbjct: 218 AATQAIPE 225

>GOR_PANTR (P48778) Exonuclease GOR (EC 3.1.-.-) (Antigen GOR) (RNA|
           exonuclease 1 homolog-like)
          Length = 427

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 19/61 (31%), Positives = 27/61 (44%)
 Frame = +1

Query: 4   PKKHAASVSALHFISLSVNSTP*HGPATTKHSPRDSRRSTDLADNRRGNKITRVESLPVP 183
           P+  +AS +AL        ST    P ++   PR   + T   D RRG K     + P+P
Sbjct: 305 PRHRSASPAALACPWPQAPSTTAISPESSPCPPRRKAKETGAVDGRRGQKAKSNPNRPLP 364

Query: 184 V 186
           V
Sbjct: 365 V 365

>GLPB_HALSA (Q9HNS3) Probable anaerobic glycerol-3-phosphate dehydrogenase|
           subunit B (EC 1.1.99.5) (Anaerobic G-3-P dehydrogenase
           subunit B) (Anaerobic G3Pdhase B)
          Length = 427

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 27/76 (35%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
 Frame = +1

Query: 220 LGLPAPVADDDRAGCTSGAAG-ADAVVLEPELTEPDLHVRRGDEQLGGLRRLEDLHGALH 396
           +G PA + DDD AG     A    A V E         V  G   L GLR  + L GAL 
Sbjct: 223 VGFPAVLGDDDPAGVRDALADHLGAAVFE---------VPMGPPSLPGLRLSDHLFGALE 273

Query: 397 GAQPQRVGPGDHCADA 444
            A   R+  G+   DA
Sbjct: 274 AA-GVRIETGNPVVDA 288

>MAP1A_HUMAN (P78559) Microtubule-associated protein 1A (MAP 1A)|
            (Proliferation-related protein p80) [Contains: MAP1 light
            chain LC2]
          Length = 2805

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 33/122 (27%), Positives = 47/122 (38%), Gaps = 15/122 (12%)
 Frame = +1

Query: 52   SVNSTP*H-GPATTKHSPRDSRRSTDLADNRRGNKITRVESLPVPVKPA----------A 198
            S   TP H  P   K  P+D + +    D +R   + + ++    VKP            
Sbjct: 1004 SATHTPFHQSPVEEKSEPQDFQEADSWGDTKRTPGVGKEDAAEETVKPGPEEGTLEKEEK 1063

Query: 199  TPGKKTGLGLPAPV-ADDDRAGCTSGAAGAD--AVVLE-PELTEPDLHVRRGDEQLGGLR 366
             P  ++     APV  D+   GCT     A   A+V E  E  EP   +   +   GGLR
Sbjct: 1064 VPPPRSPQAQEAPVNIDEGLTGCTIQLLPAQDKAIVFEIMEAGEPTGPILGAEALPGGLR 1123

Query: 367  RL 372
             L
Sbjct: 1124 TL 1125

>ZN185_HUMAN (O15231) Zinc finger protein 185 (LIM-domain protein ZNF185) (P1-A)|
          Length = 457

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 27/85 (31%), Positives = 37/85 (43%)
 Frame = +1

Query: 40  FISLSVNSTP*HGPATTKHSPRDSRRSTDLADNRRGNKITRVESLPVPVKPAATPGKKTG 219
           FI+  V      GP+     P    RST  +++ RG +I R++ L        TP  + G
Sbjct: 80  FIAKRVEVVEEDGPSEKSQDPPALARSTPGSNSSRGEEIVRLQIL--------TP--RAG 129

Query: 220 LGLPAPVADDDRAGCTSGAAGADAV 294
           L L AP    D  G +S A    AV
Sbjct: 130 LRLVAP----DVEGMSSSATSVSAV 150

>FOXM1_MOUSE (O08696) Forkhead box protein M1 (Forkhead homolog 16)|
           (Winged-helix transcription factor Trident)
          Length = 760

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 24/86 (27%), Positives = 36/86 (41%)
 Frame = +1

Query: 10  KHAASVSALHFISLSVNSTP*HGPATTKHSPRDSRRSTDLADNRRGNKITRVESLPVPVK 189
           K + +     FI +S      H      HS RDS+R+ ++     G K    + +PVP  
Sbjct: 96  KESGTSGPNRFILISSGGPSSHPSQPQAHSSRDSKRA-EVITETLGPK-PAAKGVPVPKP 153

Query: 190 PAATPGKKTGLGLPAPVADDDRAGCT 267
           P A P ++         A  + AGCT
Sbjct: 154 PGAPPRQR-----QESYAGGEAAGCT 174

>NCOR2_MOUSE (Q9WU42) Nuclear receptor corepressor 2 (N-CoR2) (Silencing mediator|
            of retinoic acid and thyroid hormone receptor) (SMRT)
            (SMRTe) (Thyroid-, retinoic-acid-receptor-associated
            corepressor) (T3 receptor-associating factor) (TRAC)
          Length = 2472

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
 Frame = -3

Query: 257  ARSSSATGAGRPSPVFFPGVAAGLTGT--GRLSTLV--ILLPRRLS--ARSVDRRLSRGE 96
            ARS+S +   RP+  F P     L GT  G   TL+  +LLP+  S  AR    R+  G 
Sbjct: 1856 ARSTSTSSPVRPAATFPPATHCPLGGTLEGVYPTLMEPVLLPKETSRVARPERARVDAGH 1915

Query: 95   CFVVAGP 75
             F+   P
Sbjct: 1916 AFLTKPP 1922

>GPD1_YARLI (Q9UVF4) Glycerol-3-phosphate dehydrogenase [NAD+] 1 (EC 1.1.1.8)|
          Length = 398

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 26/98 (26%), Positives = 40/98 (40%)
 Frame = +1

Query: 103 RDSRRSTDLADNRRGNKITRVESLPVPVKPAATPGKKTGLGLPAPVADDDRAGCTSGAAG 282
           R S R   ++   R  +  R+ +   P+  A T GK         V      G T     
Sbjct: 6   RSSLRFKHMSAVNRLTQQLRLLTASAPLSAANTAGKAP---FKVAVVGSGNWGTTVAKIV 62

Query: 283 ADAVVLEPELTEPDLHVRRGDEQLGGLRRLEDLHGALH 396
           A+     PEL EP++ V   +E++ G + L D+  A H
Sbjct: 63  AENCTAHPELFEPEVRVWVREEKVNG-KNLTDIFNAEH 99

>AUXI_BOVIN (Q27974) Auxilin|
          Length = 910

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 29/127 (22%), Positives = 50/127 (39%), Gaps = 11/127 (8%)
 Frame = +1

Query: 76  GPATTKHSPRDSRRSTDLADNRRGNKITRVESLPVPVKPAATPGKKTGLGLPAPVAD--- 246
           GP +T+ +PR S  ST  +   R  +    +    P KP+      + L   +  +D   
Sbjct: 549 GPTSTQSTPRRSATSTSASPTLRVGEGATFDPFGAPSKPSGQDLLGSFLNTASASSDPFL 608

Query: 247 --DDRAGCTSGAAGADAVVLEPELTEP-DLHVRRGDEQLGGLRRLEDLHGALHGA----- 402
                   T  A+   AV ++P+++   D H + G   +G         G+ HG      
Sbjct: 609 QPTRSPSPTVHASSTPAVNIQPDVSGAWDWHTKPGGFGMGSKSAATSPTGSSHGTPTHQN 668

Query: 403 QPQRVGP 423
           +PQ + P
Sbjct: 669 KPQTLDP 675

>CHD9_HUMAN (Q3L8U1) Chromodomain-helicase-DNA-binding protein 9 (EC 3.6.1.-)|
            (ATP-dependent helicase CHD9) (CHD-9) (Chromatin-related
            mesenchymal modulator) (CReMM) (Chromatin remodeling
            factor CHROM1) (Peroxisomal proliferator-activated
            receptor A-inter
          Length = 2897

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 102  ARQPSIHRSGGQSSRQQDYKSGKPPCPSQTSS 197
            +++P +H+ G +SS   D  S +  C S++SS
Sbjct: 2118 SKKPRVHKRGSESSSDSDSDSERSSCSSRSSS 2149

>NINAC_DROME (P10676) Neither inactivation nor afterpotential protein C (EC|
            2.7.11.1)
          Length = 1501

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 81   SYDETLTARQPSIHRSGGQSSRQQDYKSGKPPCPSQTSSYTWKKN 215
            SY+     +   +HRSG + +  + Y +  PP P   SS  ++ N
Sbjct: 1299 SYNSNYNNQNWGVHRSGSRRNSLKGYAAPPPPPPPMPSSNYYRNN 1343

>FREM2_MOUSE (Q6NVD0) FRAS1-related extracellular matrix protein 2 precursor (ECM3|
            homolog) (NV domain-containing protein 1)
          Length = 3160

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +3

Query: 60   QHALTRPSYDETL--TARQPSIHRSGGQSSRQQDYKSGKPPCPSQTSSYTWKK 212
            Q AL R  Y  T+     + + HR  G+ S +  Y S   P P Q ++ +WKK
Sbjct: 2991 QVALGREWYIHTIYTVKSKDNTHRGIGKRSLEYQYHSVVHPGPPQATTKSWKK 3043

>FRE2_YEAST (P36033) Ferric reductase transmembrane component 2 precursor (EC|
           1.16.1.7) (Ferric-chelate reductase 2)
          Length = 711

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +1

Query: 217 GLGLPAPVADDDRAGCTSGAAGADAVVL 300
           G GLP P+A   + G TS AAG  +V L
Sbjct: 546 GTGLPGPIAHAIKLGKTSAAAGKQSVKL 573

>COAT_IRV6 (Q05815) Major capsid protein (MCP) (Major structural protein)|
           (MSP)
          Length = 467

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +1

Query: 133 DNRRGNKITRVESLPVPVKPAATPGKKTGLGLPAP 237
           DN  GN    ++  PVPV PA     +  L LP P
Sbjct: 150 DNMIGNVSALIQPQPVPVAPATVSLPEADLNLPLP 184


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,610,887
Number of Sequences: 219361
Number of extensions: 1132535
Number of successful extensions: 5097
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 4728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5089
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3465624120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)