ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart31g05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC113333.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1115_B06, complete sequence Length = 139139 Score = 178 bits (90), Expect = 1e-41 Identities = 117/126 (92%) Strand = Plus / Plus Query: 295 gtacttgagcccgaactcacggaacccgatctccatgtccgccgcggcgacgagcagctc 354 |||||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||| Sbjct: 27994 gtacttgagcccgaactcccggaagccgatctccatgtcggcggcggcgacgagcagctc 28053 Query: 355 ggaggcctgcgccggctcgaggatctccacggcgcgcttcatggtgcgcagccgcagcgc 414 || |||||||||||||||||||||||||| |||||||||| |||||||||||| ||||| Sbjct: 28054 ggccgcctgcgccggctcgaggatctccaccgcgcgcttcacggtgcgcagccggagcgc 28113 Query: 415 gtcggc 420 |||||| Sbjct: 28114 gtcggc 28119
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 178 bits (90), Expect = 1e-41 Identities = 117/126 (92%) Strand = Plus / Plus Query: 295 gtacttgagcccgaactcacggaacccgatctccatgtccgccgcggcgacgagcagctc 354 |||||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||| Sbjct: 27663436 gtacttgagcccgaactcccggaagccgatctccatgtcggcggcggcgacgagcagctc 27663495 Query: 355 ggaggcctgcgccggctcgaggatctccacggcgcgcttcatggtgcgcagccgcagcgc 414 || |||||||||||||||||||||||||| |||||||||| |||||||||||| ||||| Sbjct: 27663496 ggccgcctgcgccggctcgaggatctccaccgcgcgcttcacggtgcgcagccggagcgc 27663555 Query: 415 gtcggc 420 |||||| Sbjct: 27663556 gtcggc 27663561 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 ccgccgcggcgacgagcagc 352 |||||||||||||||||||| Sbjct: 23594041 ccgccgcggcgacgagcagc 23594022
>ref|NM_185699.1| Oryza sativa (japonica cultivar-group), Ozsa8050 predicted mRNA Length = 1137 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 274 gccgccggcgccgacgccgtcg 295 |||||||||||||||||||||| Sbjct: 408 gccgccggcgccgacgccgtcg 387
>ref|NM_185689.1| Oryza sativa (japonica cultivar-group), Ozsa8040 predicted mRNA Length = 1137 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 274 gccgccggcgccgacgccgtcg 295 |||||||||||||||||||||| Sbjct: 408 gccgccggcgccgacgccgtcg 387
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 274 gccgccggcgccgacgccgtcg 295 |||||||||||||||||||||| Sbjct: 3895414 gccgccggcgccgacgccgtcg 3895393 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 274 gccgccggcgccgacgccgtcg 295 |||||||||||||||||||||| Sbjct: 3883591 gccgccggcgccgacgccgtcg 3883570 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 274 gccgccggcgccgacgccgtcg 295 |||||||||||||||||||||| Sbjct: 3845535 gccgccggcgccgacgccgtcg 3845514 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 272 gagccgccggcgccgacgccgtcg 295 ||||||||| |||||||||||||| Sbjct: 8188071 gagccgccgccgccgacgccgtcg 8188048
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Plus Query: 274 gccgccggcgccgacgccgtcgtact 299 |||||||||||||| ||||||||||| Sbjct: 8056297 gccgccggcgccgaggccgtcgtact 8056322 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 439 gacgcggccgacgagcccgcc 459 ||||||||||||||||||||| Sbjct: 2285462 gacgcggccgacgagcccgcc 2285482 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 cggcgccgacgccgtcgtac 298 |||||||||||||||||||| Sbjct: 7692939 cggcgccgacgccgtcgtac 7692920
>ref|XM_213418.3| PREDICTED: Rattus norvegicus protein phosphatase 1D magnesium-dependent, delta isoform (predicted) (Ppm1d_predicted), mRNA Length = 3212 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 470 agctccccgcccgcgcccacca 491 |||||||||||||||||||||| Sbjct: 282 agctccccgcccgcgcccacca 261
>dbj|AP003019.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0035I03 Length = 153749 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 274 gccgccggcgccgacgccgtcg 295 |||||||||||||||||||||| Sbjct: 1290 gccgccggcgccgacgccgtcg 1269
>dbj|AP002069.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0015E04 Length = 152046 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 274 gccgccggcgccgacgccgtcg 295 |||||||||||||||||||||| Sbjct: 141545 gccgccggcgccgacgccgtcg 141524 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 274 gccgccggcgccgacgccgtcg 295 |||||||||||||||||||||| Sbjct: 103489 gccgccggcgccgacgccgtcg 103468
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 379 ctccacggcgcgcttcatggtg 400 |||||||||||||||||||||| Sbjct: 4587489 ctccacggcgcgcttcatggtg 4587510
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 404 agccgcagcgcgtcggccccg 424 ||||||||||||||||||||| Sbjct: 286819 agccgcagcgcgtcggccccg 286839 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 ccgccgcggcgacgagcagc 352 |||||||||||||||||||| Sbjct: 2857433 ccgccgcggcgacgagcagc 2857414
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 434 gcgccgacgcggccgacgagcccgc 458 |||||||||| |||||||||||||| Sbjct: 1258429 gcgccgacgccgccgacgagcccgc 1258453
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 433 tgcgccgacgcggccgacgag 453 ||||||||||||||||||||| Sbjct: 1762600 tgcgccgacgcggccgacgag 1762620
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 404 agccgcagcgcgtcggccccg 424 ||||||||||||||||||||| Sbjct: 1612605 agccgcagcgcgtcggccccg 1612625 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 ccgccgcggcgacgagcagc 352 |||||||||||||||||||| Sbjct: 1035994 ccgccgcggcgacgagcagc 1035975
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 435 cgccgacgcggccgacgagcccgcc 459 |||||||||||||||||| |||||| Sbjct: 2327571 cgccgacgcggccgacgaccccgcc 2327547
>gb|AC157099.5| Mus musculus 6 BAC RP24-467O4 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 173237 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 174 ccctgtcccagtcaaaccagc 194 ||||||||||||||||||||| Sbjct: 71854 ccctgtcccagtcaaaccagc 71874
>gb|AC159712.7| Mus musculus BAC RP23-236J3 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 221910 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 174 ccctgtcccagtcaaaccagc 194 ||||||||||||||||||||| Sbjct: 1543 ccctgtcccagtcaaaccagc 1523
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 434 gcgccgacgcggccgacgagc 454 ||||||||||||||||||||| Sbjct: 1488646 gcgccgacgcggccgacgagc 1488666 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 435 cgccgacgcggccgacgagcccgc 458 ||||| |||||||||||||||||| Sbjct: 1996966 cgccgccgcggccgacgagcccgc 1996943
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 gccgccggcgccgacgccgt 293 |||||||||||||||||||| Sbjct: 48000 gccgccggcgccgacgccgt 48019
>ref|XM_550107.1| Oryza sativa (japonica cultivar-group), mRNA Length = 891 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 cgccggcgccgacgccgtcg 295 |||||||||||||||||||| Sbjct: 661 cgccggcgccgacgccgtcg 642
>gb|DQ481666.1| Takifugu rubripes HoxBb gene cluster, complete sequence Length = 130146 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 gtcggccccggcgaccactg 434 |||||||||||||||||||| Sbjct: 30728 gtcggccccggcgaccactg 30709
>gb|AC183664.3| Pan troglodytes BAC clone CH251-645D10 from chromosome 12, complete sequence Length = 176676 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 ctgtctctgctctgcatttt 42 |||||||||||||||||||| Sbjct: 16253 ctgtctctgctctgcatttt 16272
>emb|AJ965256.1| Dehalococcoides sp. CBDB1 complete genome Length = 1395502 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 cctccctgtcccagtcaaac 190 |||||||||||||||||||| Sbjct: 185942 cctccctgtcccagtcaaac 185961
>gb|AC129304.6| Mus musculus BAC clone RP24-462H23 from chromosome 10, complete sequence Length = 153772 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 ctccctgtcccagtcaaacc 191 |||||||||||||||||||| Sbjct: 117909 ctccctgtcccagtcaaacc 117928
>gb|AC122018.4| Mus musculus BAC clone RP24-361O20 from chromosome 10, complete sequence Length = 173543 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 ctccctgtcccagtcaaacc 191 |||||||||||||||||||| Sbjct: 51665 ctccctgtcccagtcaaacc 51684
>gb|AC125234.4| Mus musculus BAC clone RP23-14K16 from 13, complete sequence Length = 209715 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 gtctctgctctgcattttat 44 |||||||||||||||||||| Sbjct: 183898 gtctctgctctgcattttat 183879
>emb|Z17372.1|MSASDASK M.smegmatis asd, ask-alpha, and ask-beta genes Length = 5037 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 gcgccgacgcggccgacgag 453 |||||||||||||||||||| Sbjct: 753 gcgccgacgcggccgacgag 734
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 407 cgcagcgcgtcggccccggc 426 |||||||||||||||||||| Sbjct: 3686987 cgcagcgcgtcggccccggc 3686968
>emb|AJ315730.1|SNO315730 Streptomyces noursei npsB gene for nourseothricin peptidyl carrier protein Length = 2100 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 397 ggtgcgcagccgcagcgcgtcggc 420 |||||||||| ||||||||||||| Sbjct: 1802 ggtgcgcagcggcagcgcgtcggc 1779
>gb|AF186190.4| Homo sapiens chromosome 8 clone CTC-369M3 map 8q24.3 , complete sequence Length = 152405 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 ctggctgcacgtcaggagcc 276 |||||||||||||||||||| Sbjct: 46980 ctggctgcacgtcaggagcc 46961
>gb|AF192304.6| Homo sapiens chromosome 8 clone CTC-458A3 map 8q24.3, complete sequence Length = 177028 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 ctggctgcacgtcaggagcc 276 |||||||||||||||||||| Sbjct: 136443 ctggctgcacgtcaggagcc 136424
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 gccgccggcgccgacgccgt 293 |||||||||||||||||||| Sbjct: 1904881 gccgccggcgccgacgccgt 1904862 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 agccgccggcgccgacgccg 292 |||||||||||||||||||| Sbjct: 1464125 agccgccggcgccgacgccg 1464106
>gb|AC012385.28| Homo sapiens 12 BAC RP11-350A5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 24001 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 ctgtctctgctctgcatttt 42 |||||||||||||||||||| Sbjct: 9230 ctgtctctgctctgcatttt 9211
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 cgccggcgccgacgccgtcg 295 |||||||||||||||||||| Sbjct: 4483748 cgccggcgccgacgccgtcg 4483767
>gb|AY987040.1| Oryza sativa (japonica cultivar-group) EUI gene, complete cds Length = 13120 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 ccgccgcggcgacgagcagc 352 |||||||||||||||||||| Sbjct: 13111 ccgccgcggcgacgagcagc 13092
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 ccgccgcggcgacgagcagc 352 |||||||||||||||||||| Sbjct: 629742 ccgccgcggcgacgagcagc 629723
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 ccgccgcggcgacgagcagc 352 |||||||||||||||||||| Sbjct: 20641210 ccgccgcggcgacgagcagc 20641191
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 cgccggcgccgacgccgtcg 295 |||||||||||||||||||| Sbjct: 2400175 cgccggcgccgacgccgtcg 2400194
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 gctgggcctgccggcgccgg 238 |||||||||||||||||||| Sbjct: 4422934 gctgggcctgccggcgccgg 4422915
>gb|AF055579.2|AF055579 Streptomyces antibioticus putative 3-ketoreductase (oleW), 2,3-dehydratase (oleV), dTDP-4-keto-6-deoxyglucose 3,5-epimerase (oleL), dTDP-D-glucose synthase (oleS), dehydratase (oleE), 4-ketoreductase (oleU), dehydratase (oleNI), reductase (oleT), glycosyltransferase OleI (oleI), aminotransferase (oleN2), and glycosidase OleR (oleR) genes, complete cds Length = 15052 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 gccggcgccgacgccgtcgt 296 |||||||||||||||||||| Sbjct: 7632 gccggcgccgacgccgtcgt 7613
>dbj|AP005092.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1112_E07 Length = 132055 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 ccgccgcggcgacgagcagc 352 |||||||||||||||||||| Sbjct: 34821 ccgccgcggcgacgagcagc 34802
>dbj|AP005314.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0515E01 Length = 140063 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 ccgccgcggcgacgagcagc 352 |||||||||||||||||||| Sbjct: 106868 ccgccgcggcgacgagcagc 106849
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 ccgccgcggcgacgagcagc 352 |||||||||||||||||||| Sbjct: 2903789 ccgccgcggcgacgagcagc 2903808
>dbj|AP003311.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0024G09 Length = 175565 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 cgccggcgccgacgccgtcg 295 |||||||||||||||||||| Sbjct: 129225 cgccggcgccgacgccgtcg 129244
>dbj|AP005619.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0624H09 Length = 158719 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 272 gagccgccggcgccgacgccgtcg 295 ||||||||| |||||||||||||| Sbjct: 80434 gagccgccgccgccgacgccgtcg 80411
>gb|AF237894.1|AF237894S1 Streptomyces antibioticus Tu99 oleandomycin biosynthetic gene cluster, partial sequence Length = 9523 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 gccggcgccgacgccgtcgt 296 |||||||||||||||||||| Sbjct: 7200 gccggcgccgacgccgtcgt 7181
>dbj|AK073741.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033067A21, full insert sequence Length = 1444 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 ccgccgcggcgacgagcagc 352 |||||||||||||||||||| Sbjct: 111 ccgccgcggcgacgagcagc 92
>gb|AC137692.4| Mus musculus BAC clone RP24-323P9 from 13, complete sequence Length = 180677 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 gtctctgctctgcattttat 44 |||||||||||||||||||| Sbjct: 102801 gtctctgctctgcattttat 102820
>gb|AC137619.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0095J22, complete sequence Length = 151730 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 ccgccgcggcgacgagcagc 352 |||||||||||||||||||| Sbjct: 131213 ccgccgcggcgacgagcagc 131194 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,065,054 Number of Sequences: 3902068 Number of extensions: 3065054 Number of successful extensions: 75739 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 52 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71011 Number of HSP's gapped (non-prelim): 4728 length of query: 496 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 474 effective length of database: 17,147,199,772 effective search space: 8127772691928 effective search space used: 8127772691928 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
