ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart31g02 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 81.8 bits (41), Expect = 2e-12 Identities = 68/77 (88%) Strand = Plus / Plus Query: 376 aatcagccgctgaacggcttgtacactttgagcgcttcgataacgttggcgatggagccc 435 ||||| |||||||||||| ||||||| |||||||| ||||| |||| || ||||||||| Sbjct: 4143919 aatcatccgctgaacggcctgtacaccttgagcgcgtcgatgacgtcagcaatggagccc 4143978 Query: 436 gctgcggcggcgatgga 452 || |||||||||||||| Sbjct: 4143979 gcggcggcggcgatgga 4143995 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 376 aatcagccgctgaacggcttgtacactttgagcgcttcgataacgttggcgatggagccc 435 ||||| ||||||||||| ||||||| ||||| || ||||| |||| || ||||||||| Sbjct: 4121662 aatcatccgctgaacggtctgtacaccttgagagcgtcgatgacgtcagcaatggagccc 4121603 Query: 436 gctgcggcggcgatgga 452 || |||||||||||||| Sbjct: 4121602 gcagcggcggcgatgga 4121586
>dbj|AK105784.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-G09, full insert sequence Length = 1773 Score = 81.8 bits (41), Expect = 2e-12 Identities = 68/77 (88%) Strand = Plus / Minus Query: 376 aatcagccgctgaacggcttgtacactttgagcgcttcgataacgttggcgatggagccc 435 ||||| |||||||||||| ||||||| |||||||| ||||| |||| || ||||||||| Sbjct: 1503 aatcatccgctgaacggcctgtacaccttgagcgcgtcgatgacgtcagcaatggagccc 1444 Query: 436 gctgcggcggcgatgga 452 || |||||||||||||| Sbjct: 1443 gcggcggcggcgatgga 1427
>dbj|AK061470.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-D07, full insert sequence Length = 1797 Score = 81.8 bits (41), Expect = 2e-12 Identities = 68/77 (88%) Strand = Plus / Minus Query: 376 aatcagccgctgaacggcttgtacactttgagcgcttcgataacgttggcgatggagccc 435 ||||| |||||||||||| ||||||| |||||||| ||||| |||| || ||||||||| Sbjct: 1505 aatcatccgctgaacggcctgtacaccttgagcgcgtcgatgacgtcagcaatggagccc 1446 Query: 436 gctgcggcggcgatgga 452 || |||||||||||||| Sbjct: 1445 gcggcggcggcgatgga 1429
>dbj|AK061444.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-C11, full insert sequence Length = 1662 Score = 81.8 bits (41), Expect = 2e-12 Identities = 68/77 (88%) Strand = Plus / Minus Query: 376 aatcagccgctgaacggcttgtacactttgagcgcttcgataacgttggcgatggagccc 435 ||||| |||||||||||| ||||||| |||||||| ||||| |||| || ||||||||| Sbjct: 1503 aatcatccgctgaacggcctgtacaccttgagcgcgtcgatgacgtcagcaatggagccc 1444 Query: 436 gctgcggcggcgatgga 452 || |||||||||||||| Sbjct: 1443 gcggcggcggcgatgga 1427
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 81.8 bits (41), Expect = 2e-12 Identities = 68/77 (88%) Strand = Plus / Plus Query: 376 aatcagccgctgaacggcttgtacactttgagcgcttcgataacgttggcgatggagccc 435 ||||| |||||||||||| ||||||| |||||||| ||||| |||| || ||||||||| Sbjct: 4143906 aatcatccgctgaacggcctgtacaccttgagcgcgtcgatgacgtcagcaatggagccc 4143965 Query: 436 gctgcggcggcgatgga 452 || |||||||||||||| Sbjct: 4143966 gcggcggcggcgatgga 4143982 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 376 aatcagccgctgaacggcttgtacactttgagcgcttcgataacgttggcgatggagccc 435 ||||| ||||||||||| ||||||| ||||| || ||||| |||| || ||||||||| Sbjct: 4121649 aatcatccgctgaacggtctgtacaccttgagagcgtcgatgacgtcagcaatggagccc 4121590 Query: 436 gctgcggcggcgatgga 452 || |||||||||||||| Sbjct: 4121589 gcagcggcggcgatgga 4121573
>emb|AL928748.4|CNS08CBL Oryza sativa chromosome 12, . BAC OSJNBb0092O07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 123469 Score = 81.8 bits (41), Expect = 2e-12 Identities = 68/77 (88%) Strand = Plus / Plus Query: 376 aatcagccgctgaacggcttgtacactttgagcgcttcgataacgttggcgatggagccc 435 ||||| |||||||||||| ||||||| |||||||| ||||| |||| || ||||||||| Sbjct: 86315 aatcatccgctgaacggcctgtacaccttgagcgcgtcgatgacgtcagcaatggagccc 86374 Query: 436 gctgcggcggcgatgga 452 || |||||||||||||| Sbjct: 86375 gcggcggcggcgatgga 86391 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 376 aatcagccgctgaacggcttgtacactttgagcgcttcgataacgttggcgatggagccc 435 ||||| ||||||||||| ||||||| ||||| || ||||| |||| || ||||||||| Sbjct: 64058 aatcatccgctgaacggtctgtacaccttgagagcgtcgatgacgtcagcaatggagccc 63999 Query: 436 gctgcggcggcgatgga 452 || |||||||||||||| Sbjct: 63998 gcagcggcggcgatgga 63982
>dbj|AK106090.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-B07, full insert sequence Length = 1715 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 376 aatcagccgctgaacggcttgtacactttgagcgcttcgataacgttggcgatggagccc 435 ||||| ||||||||||| ||||||| ||||| || ||||| |||| || ||||||||| Sbjct: 1525 aatcatccgctgaacggtctgtacaccttgagagcgtcgatgacgtcagcaatggagccc 1466 Query: 436 gctgcggcggcgatgga 452 || |||||||||||||| Sbjct: 1465 gcagcggcggcgatgga 1449
>dbj|AK099164.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023073O03, full insert sequence Length = 1709 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 376 aatcagccgctgaacggcttgtacactttgagcgcttcgataacgttggcgatggagccc 435 ||||| ||||||||||| ||||||| ||||| || ||||| |||| || ||||||||| Sbjct: 1528 aatcatccgctgaacggtctgtacaccttgagagcgtcgatgacgtcagcaatggagccc 1469 Query: 436 gctgcggcggcgatgga 452 || |||||||||||||| Sbjct: 1468 gcagcggcggcgatgga 1452
>dbj|AK061448.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-E03, full insert sequence Length = 1725 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 376 aatcagccgctgaacggcttgtacactttgagcgcttcgataacgttggcgatggagccc 435 ||||| ||||||||||| ||||||| ||||| || ||||| |||| || ||||||||| Sbjct: 1526 aatcatccgctgaacggtctgtacaccttgagagcgtcgatgacgtcagcaatggagccc 1467 Query: 436 gctgcggcggcgatgga 452 || |||||||||||||| Sbjct: 1466 gcagcggcggcgatgga 1450
>gb|AC145322.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0096N19, complete sequence Length = 178671 Score = 61.9 bits (31), Expect = 2e-06 Identities = 58/67 (86%) Strand = Plus / Plus Query: 382 ccgctgaacggcttgtacactttgagcgcttcgataacgttggcgatggagcccgctgcg 441 |||||||||||| |||||| |||||||| |||| |||| |||||||||||| || ||| Sbjct: 60318 ccgctgaacggccggtacaccttgagcgcgtcgaccacgtcggcgatggagccggcggcg 60377 Query: 442 gcggcga 448 ||||||| Sbjct: 60378 gcggcga 60384
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 61.9 bits (31), Expect = 2e-06 Identities = 58/67 (86%) Strand = Plus / Minus Query: 382 ccgctgaacggcttgtacactttgagcgcttcgataacgttggcgatggagcccgctgcg 441 |||||||||||| |||||| |||||||| |||| |||| |||||||||||| || ||| Sbjct: 4771356 ccgctgaacggccggtacaccttgagcgcgtcgaccacgtcggcgatggagccggcggcg 4771297 Query: 442 gcggcga 448 ||||||| Sbjct: 4771296 gcggcga 4771290
>dbj|AK104370.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-E06, full insert sequence Length = 1707 Score = 61.9 bits (31), Expect = 2e-06 Identities = 58/67 (86%) Strand = Plus / Minus Query: 382 ccgctgaacggcttgtacactttgagcgcttcgataacgttggcgatggagcccgctgcg 441 |||||||||||| |||||| |||||||| |||| |||| |||||||||||| || ||| Sbjct: 1542 ccgctgaacggccggtacaccttgagcgcgtcgaccacgtcggcgatggagccggcggcg 1483 Query: 442 gcggcga 448 ||||||| Sbjct: 1482 gcggcga 1476
>dbj|AK068003.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129H02, full insert sequence Length = 1781 Score = 61.9 bits (31), Expect = 2e-06 Identities = 58/67 (86%) Strand = Plus / Minus Query: 382 ccgctgaacggcttgtacactttgagcgcttcgataacgttggcgatggagcccgctgcg 441 |||||||||||| |||||| |||||||| |||| |||| |||||||||||| || ||| Sbjct: 1529 ccgctgaacggccggtacaccttgagcgcgtcgaccacgtcggcgatggagccggcggcg 1470 Query: 442 gcggcga 448 ||||||| Sbjct: 1469 gcggcga 1463
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 61.9 bits (31), Expect = 2e-06 Identities = 58/67 (86%) Strand = Plus / Minus Query: 382 ccgctgaacggcttgtacactttgagcgcttcgataacgttggcgatggagcccgctgcg 441 |||||||||||| |||||| |||||||| |||| |||| |||||||||||| || ||| Sbjct: 4790140 ccgctgaacggccggtacaccttgagcgcgtcgaccacgtcggcgatggagccggcggcg 4790081 Query: 442 gcggcga 448 ||||||| Sbjct: 4790080 gcggcga 4790074
>ref|XM_463528.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1467 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 423 ggcgatggagcccgctgcggcggcgatgga 452 ||||||||||||||| |||||||||||||| Sbjct: 1419 ggcgatggagcccgcggcggcggcgatgga 1390
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 423 ggcgatggagcccgctgcggcggcgatgga 452 ||||||||||||||| |||||||||||||| Sbjct: 38304125 ggcgatggagcccgcggcggcggcgatgga 38304154
>dbj|AP003561.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1065E10 Length = 183580 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 423 ggcgatggagcccgctgcggcggcgatgga 452 ||||||||||||||| |||||||||||||| Sbjct: 64950 ggcgatggagcccgcggcggcggcgatgga 64979
>dbj|AK059325.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-A01, full insert sequence Length = 1858 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 423 ggcgatggagcccgctgcggcggcgatgga 452 ||||||||||||||| |||||||||||||| Sbjct: 1579 ggcgatggagcccgcggcggcggcgatgga 1550
>gb|AC013406.7| Homo sapiens BAC clone RP11-341F20 from 2, complete sequence Length = 190018 Score = 46.1 bits (23), Expect = 0.099 Identities = 26/27 (96%) Strand = Plus / Plus Query: 293 ctacttcctttgtatgtaaataattat 319 |||||||||||||||||| |||||||| Sbjct: 127562 ctacttcctttgtatgtacataattat 127588
>emb|BX571879.8| Zebrafish DNA sequence from clone DKEY-238C7 in linkage group 18, complete sequence Length = 252198 Score = 46.1 bits (23), Expect = 0.099 Identities = 23/23 (100%) Strand = Plus / Minus Query: 306 atgtaaataattatagttgtttt 328 ||||||||||||||||||||||| Sbjct: 233709 atgtaaataattatagttgtttt 233687
>emb|CR318588.10| Zebrafish DNA sequence from clone DKEYP-1H4 in linkage group 18, complete sequence Length = 179350 Score = 46.1 bits (23), Expect = 0.099 Identities = 23/23 (100%) Strand = Plus / Minus Query: 306 atgtaaataattatagttgtttt 328 ||||||||||||||||||||||| Sbjct: 71224 atgtaaataattatagttgtttt 71202
>gb|AF339024.1| Fragaria x ananassa pectate lyase B gene, partial cds Length = 5368 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 310 aaataattatagttgttttcaa 331 |||||||||||||||||||||| Sbjct: 2672 aaataattatagttgttttcaa 2693
>emb|Z68694.1|HSCU177E8 Human DNA sequence from clone LL0XNC01-177E8 on chromosome X Contains the gene for a novel protein, a guanosine monophosphate reductase (GMPR) pseudogene and the gene for a novel protein (MGC45400), complete sequence Length = 40822 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 177 caagaaaatgcaaccaaaggc 197 ||||||||||||||||||||| Sbjct: 30314 caagaaaatgcaaccaaaggc 30294
>emb|BX470068.7| Zebrafish DNA sequence from clone CH211-219C8 in linkage group 1, complete sequence Length = 210511 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 306 atgtaaataattatagttgttttcaacta 334 ||||||||| |||||||||||||||||| Sbjct: 110697 atgtaaatatctatagttgttttcaacta 110669
>gb|AC021351.4|AC021351 Homo sapiens, clone RP11-24N21, complete sequence Length = 164291 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 47 tgttttttcctccggtacagaatta 71 |||||||||||| |||||||||||| Sbjct: 35410 tgttttttcctcaggtacagaatta 35386
>gb|AC129065.3| Didelphis virginiana clone LB3-118L8, complete sequence Length = 166731 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 67 aattagaatcccttcacaaag 87 ||||||||||||||||||||| Sbjct: 78153 aattagaatcccttcacaaag 78133
>gb|DP000023.1| Didelphis virginiana target 1 genomic scaffold Length = 1751794 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 67 aattagaatcccttcacaaag 87 ||||||||||||||||||||| Sbjct: 1663216 aattagaatcccttcacaaag 1663196
>gb|AC079830.9| Oryza sativa chromosome 3 BAC OSJNBb0009F04 genomic sequence, complete sequence Length = 129655 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 ggtgtatgtaatgtatgtat 277 |||||||||||||||||||| Sbjct: 37186 ggtgtatgtaatgtatgtat 37167
>gb|AC008348.5| Drosophila melanogaster clone BACR02I11, complete sequence Length = 191467 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 taaataattatagttgtttt 328 |||||||||||||||||||| Sbjct: 14638 taaataattatagttgtttt 14657
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 ggtgtatgtaatgtatgtat 277 |||||||||||||||||||| Sbjct: 26389146 ggtgtatgtaatgtatgtat 26389127
>gb|AC090683.7| Oryza sativa chromosome 3 BAC OSJNBa0035I24 genomic sequence, complete sequence Length = 134728 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 ggtgtatgtaatgtatgtat 277 |||||||||||||||||||| Sbjct: 1494 ggtgtatgtaatgtatgtat 1513
>gb|AC102783.10| Mus musculus chromosome 14, clone RP23-390K3, complete sequence Length = 199993 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 ccaagaaaatgcaaccaaag 195 |||||||||||||||||||| Sbjct: 126869 ccaagaaaatgcaaccaaag 126888
>emb|AL139404.9| Human DNA sequence from clone RP11-376D11 on chromosome 10 Contains the 5' end of the SSH3BP gene for spectrin SH3 domain binding protein 1, complete sequence Length = 122913 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 tacttcctttgtatgtaaat 313 |||||||||||||||||||| Sbjct: 19602 tacttcctttgtatgtaaat 19583
>gb|AC092366.3| Homo sapiens chromosome 5 clone RP11-461C13, complete sequence Length = 158230 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 287 ttataactacttcctttgtatgta 310 |||||||||||| ||||||||||| Sbjct: 85939 ttataactactttctttgtatgta 85962
>gb|AC099019.1| Drosophila melanogaster, chromosome 2R, region 58C-58D, BAC clone BACR02O12, complete sequence Length = 171594 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 taaataattatagttgtttt 328 |||||||||||||||||||| Sbjct: 3898 taaataattatagttgtttt 3879
>tpg|BK004878.1| TPA: TPA_exp: Oryza sativa (japonica cultivar-group) growth-regulating factor 9 (GRF9) gene, complete cds Length = 5610 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 ggtgtatgtaatgtatgtat 277 |||||||||||||||||||| Sbjct: 2686 ggtgtatgtaatgtatgtat 2667
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 ggtgtatgtaatgtatgtat 277 |||||||||||||||||||| Sbjct: 26480455 ggtgtatgtaatgtatgtat 26480436
>gb|AC149155.3| Xenopus tropicalis clone ISB-242B17, complete sequence Length = 94528 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 tatgtaatgtatgtattgca 281 |||||||||||||||||||| Sbjct: 52715 tatgtaatgtatgtattgca 52696
>gb|AC008873.4|AC008873 Homo sapiens chromosome 5 clone CTD-2199H11, complete sequence Length = 170358 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 287 ttataactacttcctttgtatgta 310 |||||||||||| ||||||||||| Sbjct: 162689 ttataactactttctttgtatgta 162712
>emb|AL645755.20| Zebrafish DNA sequence from clone RP71-1N18 in linkage group 22, complete sequence Length = 141779 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 ggtgtatgtaatgtatgtat 277 |||||||||||||||||||| Sbjct: 40289 ggtgtatgtaatgtatgtat 40270
>emb|CR388051.22| Zebrafish DNA sequence from clone CH211-239B6 in linkage group 15, complete sequence Length = 120027 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 gtgtatgtaatgtatgtatt 278 |||||||||||||||||||| Sbjct: 131 gtgtatgtaatgtatgtatt 150
>gb|AE003456.3| Drosophila melanogaster chromosome 2R, section 64 of 73 of the complete sequence Length = 288451 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 taaataattatagttgtttt 328 |||||||||||||||||||| Sbjct: 244328 taaataattatagttgtttt 244347
>gb|AC004252.1|AC004252 Drosophila melanogaster (P1 DS09121 (D88)) DNA sequence, complete sequence Length = 59498 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 taaataattatagttgtttt 328 |||||||||||||||||||| Sbjct: 52020 taaataattatagttgtttt 52001
>emb|CR524482.18| Zebrafish DNA sequence from clone DKEY-109F24 in linkage group 15, complete sequence Length = 125769 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 gtgtatgtaatgtatgtatt 278 |||||||||||||||||||| Sbjct: 123900 gtgtatgtaatgtatgtatt 123919
>emb|AL731801.11| Mouse DNA sequence from clone RP23-181L15 on chromosome X, complete sequence Length = 197346 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 aggttcaacaagggcctttc 243 |||||||||||||||||||| Sbjct: 71543 aggttcaacaagggcctttc 71524 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,598,028 Number of Sequences: 3902068 Number of extensions: 3598028 Number of successful extensions: 79237 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78946 Number of HSP's gapped (non-prelim): 291 length of query: 454 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 432 effective length of database: 17,147,199,772 effective search space: 7407590301504 effective search space used: 7407590301504 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
