ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart31g01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NORR2_RALEU (Q9K4U8) Nitric oxide reductase transcription regula... 30 1.9
2R13L1_ARATH (Q9LRR4) Putative disease resistance RPP13-like prot... 30 3.2
3NORR1_RALEU (Q9K4V0) Nitric oxide reductase transcription regula... 29 4.2
4YGEH_ECOLI (P76639) Hypothetical protein ygeH 28 9.4
5YRM8_CAEEL (Q09417) Hypothetical WD-repeat protein R06F6.8 28 9.4

>NORR2_RALEU (Q9K4U8) Nitric oxide reductase transcription regulator norR2|
          Length = 521

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = -1

Query: 307 LHPKILSIAGLRGIRCLH----APDCLQDL*PQMLGTKIPVKWVSGLSM 173
           LHP++ +I   RG+ C H     PD    L  + +G  +PV    G S+
Sbjct: 71  LHPRLAAILARRGVTCFHHDSMLPDPYDGLIDEHVGEPLPVHDCMGTSL 119



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>R13L1_ARATH (Q9LRR4) Putative disease resistance RPP13-like protein 1|
          Length = 1054

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = -1

Query: 427  TYRNQSIALEKSPCQHMIPLYSPIQHWRLSQKPATMGCTSLHPKILSIAGLRG---IRCL 257
            +YRN      KS C  ++    P+ H+    K     CTSL+   LS   LRG   +R L
Sbjct: 922  SYRNLQTLSIKSSCDTLVKF--PLNHFANLDKLEVDQCTSLYSLELSNEHLRGPNALRNL 979

Query: 256  HAPDC 242
               DC
Sbjct: 980  RINDC 984



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>NORR1_RALEU (Q9K4V0) Nitric oxide reductase transcription regulator norR1|
          Length = 514

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
 Frame = -1

Query: 310 SLHPKILSIAGLRGIRCLH----APDCLQDL*PQMLGTKIPVKWVSGLSM 173
           SLHP++ +I   R + C H     PD    L  + +G  +PV    G S+
Sbjct: 68  SLHPRLAAILARRDVTCFHHDSMLPDPYDGLIDEHVGEPLPVHDCMGTSL 117



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>YGEH_ECOLI (P76639) Hypothetical protein ygeH|
          Length = 458

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -3

Query: 404 P*KISLPTYDPIVLANSTLEIVPEASDNGLYFFTS*DTEHC--WVTRNQMPSR 252
           P   SL T DP++L    ++I+     +GLY +    T  C   +++N   SR
Sbjct: 124 PFTTSLNTLDPLILNQELVQIISNKKIDGLYTYPMAATNFCNDHISQNSFLSR 176



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>YRM8_CAEEL (Q09417) Hypothetical WD-repeat protein R06F6.8|
          Length = 1470

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -2

Query: 330  QRQWAVLLYILRY*ALLGYEESDAF--TPPTACKTCSHR 220
            +++W +   ++R+   +G E+ DAF  TPP + KT   R
Sbjct: 951  EKKWTIAKEMVRFARSIGSEDIDAFFRTPPPSAKTSLSR 989


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,269,029
Number of Sequences: 219361
Number of extensions: 1311168
Number of successful extensions: 2866
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2866
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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