Clone Name | rbart31f12 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 178 bits (90), Expect = 1e-41 Identities = 174/202 (86%) Strand = Plus / Minus Query: 312 atggggaagaggtgcccggccgtgggcagctcatggtactgcacccatggcagcctctgc 371 |||||||| ||||| || |||||||||||||| |||||| ||||||| ||||||| |||| Sbjct: 19614673 atggggaacaggtggcccgccgtgggcagctcgtggtaccgcacccacggcagccgctgc 19614614 Query: 372 gcgatgtaccgtgagaggccaacgggcacgatgaggtcctccgcgccatgccataggtgc 431 ||||||| ||| || || |||||||||||||||||||||||||| ||||| |||||| Sbjct: 19614613 gcgatgtgccgcgacagctgcacgggcacgatgaggtcctccgcgccgtgccacaggtgc 19614554 Query: 432 acatccgcctcatcgccggggaacgggttctccatctccagcgggctccaaccccacttt 491 || ||||||| | | |||||||||||||||||||||||||||||||| |||||||| Sbjct: 19614553 accgccgcctcgcccgccgggaacgggttctccatctccagcgggctccacccccacttc 19614494 Query: 492 ccgaacccgacgatcatgtccc 513 |||||||| || | |||||||| Sbjct: 19614493 ccgaaccccaccagcatgtccc 19614472
>dbj|AP005110.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0605D08 Length = 144340 Score = 178 bits (90), Expect = 1e-41 Identities = 174/202 (86%) Strand = Plus / Minus Query: 312 atggggaagaggtgcccggccgtgggcagctcatggtactgcacccatggcagcctctgc 371 |||||||| ||||| || |||||||||||||| |||||| ||||||| ||||||| |||| Sbjct: 80959 atggggaacaggtggcccgccgtgggcagctcgtggtaccgcacccacggcagccgctgc 80900 Query: 372 gcgatgtaccgtgagaggccaacgggcacgatgaggtcctccgcgccatgccataggtgc 431 ||||||| ||| || || |||||||||||||||||||||||||| ||||| |||||| Sbjct: 80899 gcgatgtgccgcgacagctgcacgggcacgatgaggtcctccgcgccgtgccacaggtgc 80840 Query: 432 acatccgcctcatcgccggggaacgggttctccatctccagcgggctccaaccccacttt 491 || ||||||| | | |||||||||||||||||||||||||||||||| |||||||| Sbjct: 80839 accgccgcctcgcccgccgggaacgggttctccatctccagcgggctccacccccacttc 80780 Query: 492 ccgaacccgacgatcatgtccc 513 |||||||| || | |||||||| Sbjct: 80779 ccgaaccccaccagcatgtccc 80758
>dbj|AK119210.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-E04, full insert sequence Length = 1405 Score = 178 bits (90), Expect = 1e-41 Identities = 174/202 (86%) Strand = Plus / Minus Query: 312 atggggaagaggtgcccggccgtgggcagctcatggtactgcacccatggcagcctctgc 371 |||||||| ||||| || |||||||||||||| |||||| ||||||| ||||||| |||| Sbjct: 1178 atggggaacaggtggcccgccgtgggcagctcgtggtaccgcacccacggcagccgctgc 1119 Query: 372 gcgatgtaccgtgagaggccaacgggcacgatgaggtcctccgcgccatgccataggtgc 431 ||||||| ||| || || |||||||||||||||||||||||||| ||||| |||||| Sbjct: 1118 gcgatgtgccgcgacagctgcacgggcacgatgaggtcctccgcgccgtgccacaggtgc 1059 Query: 432 acatccgcctcatcgccggggaacgggttctccatctccagcgggctccaaccccacttt 491 || ||||||| | | |||||||||||||||||||||||||||||||| |||||||| Sbjct: 1058 accgccgcctcgcccgccgggaacgggttctccatctccagcgggctccacccccacttc 999 Query: 492 ccgaacccgacgatcatgtccc 513 |||||||| || | |||||||| Sbjct: 998 ccgaaccccaccagcatgtccc 977
>dbj|AK104452.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-H03, full insert sequence Length = 1399 Score = 178 bits (90), Expect = 1e-41 Identities = 174/202 (86%) Strand = Plus / Minus Query: 312 atggggaagaggtgcccggccgtgggcagctcatggtactgcacccatggcagcctctgc 371 |||||||| ||||| || |||||||||||||| |||||| ||||||| ||||||| |||| Sbjct: 1178 atggggaacaggtggcccgccgtgggcagctcgtggtaccgcacccacggcagccgctgc 1119 Query: 372 gcgatgtaccgtgagaggccaacgggcacgatgaggtcctccgcgccatgccataggtgc 431 ||||||| ||| || || |||||||||||||||||||||||||| ||||| |||||| Sbjct: 1118 gcgatgtgccgcgacagctgcacgggcacgatgaggtcctccgcgccgtgccacaggtgc 1059 Query: 432 acatccgcctcatcgccggggaacgggttctccatctccagcgggctccaaccccacttt 491 || ||||||| | | |||||||||||||||||||||||||||||||| |||||||| Sbjct: 1058 accgccgcctcgcccgccgggaacgggttctccatctccagcgggctccacccccacttc 999 Query: 492 ccgaacccgacgatcatgtccc 513 |||||||| || | |||||||| Sbjct: 998 ccgaaccccaccagcatgtccc 977
>dbj|AK099017.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013119A16, full insert sequence Length = 1391 Score = 178 bits (90), Expect = 1e-41 Identities = 174/202 (86%) Strand = Plus / Minus Query: 312 atggggaagaggtgcccggccgtgggcagctcatggtactgcacccatggcagcctctgc 371 |||||||| ||||| || |||||||||||||| |||||| ||||||| ||||||| |||| Sbjct: 1179 atggggaacaggtggcccgccgtgggcagctcgtggtaccgcacccacggcagccgctgc 1120 Query: 372 gcgatgtaccgtgagaggccaacgggcacgatgaggtcctccgcgccatgccataggtgc 431 ||||||| ||| || || |||||||||||||||||||||||||| ||||| |||||| Sbjct: 1119 gcgatgtgccgcgacagctgcacgggcacgatgaggtcctccgcgccgtgccacaggtgc 1060 Query: 432 acatccgcctcatcgccggggaacgggttctccatctccagcgggctccaaccccacttt 491 || ||||||| | | |||||||||||||||||||||||||||||||| |||||||| Sbjct: 1059 accgccgcctcgcccgccgggaacgggttctccatctccagcgggctccacccccacttc 1000 Query: 492 ccgaacccgacgatcatgtccc 513 |||||||| || | |||||||| Sbjct: 999 ccgaaccccaccagcatgtccc 978
>dbj|AK061527.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-D10, full insert sequence Length = 1409 Score = 178 bits (90), Expect = 1e-41 Identities = 174/202 (86%) Strand = Plus / Minus Query: 312 atggggaagaggtgcccggccgtgggcagctcatggtactgcacccatggcagcctctgc 371 |||||||| ||||| || |||||||||||||| |||||| ||||||| ||||||| |||| Sbjct: 1178 atggggaacaggtggcccgccgtgggcagctcgtggtaccgcacccacggcagccgctgc 1119 Query: 372 gcgatgtaccgtgagaggccaacgggcacgatgaggtcctccgcgccatgccataggtgc 431 ||||||| ||| || || |||||||||||||||||||||||||| ||||| |||||| Sbjct: 1118 gcgatgtgccgcgacagctgcacgggcacgatgaggtcctccgcgccgtgccacaggtgc 1059 Query: 432 acatccgcctcatcgccggggaacgggttctccatctccagcgggctccaaccccacttt 491 || ||||||| | | |||||||||||||||||||||||||||||||| |||||||| Sbjct: 1058 accgccgcctcgcccgccgggaacgggttctccatctccagcgggctccacccccacttc 999 Query: 492 ccgaacccgacgatcatgtccc 513 |||||||| || | |||||||| Sbjct: 998 ccgaaccccaccagcatgtccc 977
>ref|XM_472398.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1035 Score = 63.9 bits (32), Expect = 5e-07 Identities = 95/116 (81%) Strand = Plus / Minus Query: 396 ggcacgatgaggtcctccgcgccatgccataggtgcacatccgcctcatcgccggggaac 455 |||||||| |||||||| ||||| ||||| |||||||| | | | | |||||| |||| Sbjct: 884 ggcacgatcaggtcctcggcgccgtgccacaggtgcaccttccctttgccgccggcgaac 825 Query: 456 gggttctccatctccagcgggctccaaccccactttccgaacccgacgatcatgtc 511 |||| ||| | ||||||||||||||| | |||||| ||||| ||||| ||||||| Sbjct: 824 gggtcctcgagctccagcgggctccagctccacttcccgaatccgaccgtcatgtc 769
>emb|AL662947.3|OSJN00148 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0073L04, complete sequence Length = 143301 Score = 63.9 bits (32), Expect = 5e-07 Identities = 95/116 (81%) Strand = Plus / Minus Query: 396 ggcacgatgaggtcctccgcgccatgccataggtgcacatccgcctcatcgccggggaac 455 |||||||| |||||||| ||||| ||||| |||||||| | | | | |||||| |||| Sbjct: 84208 ggcacgatcaggtcctcggcgccgtgccacaggtgcaccttccctttgccgccggcgaac 84149 Query: 456 gggttctccatctccagcgggctccaaccccactttccgaacccgacgatcatgtc 511 |||| ||| | ||||||||||||||| | |||||| ||||| ||||| ||||||| Sbjct: 84148 gggtcctcgagctccagcgggctccagctccacttcccgaatccgaccgtcatgtc 84093
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 63.9 bits (32), Expect = 5e-07 Identities = 95/116 (81%) Strand = Plus / Minus Query: 396 ggcacgatgaggtcctccgcgccatgccataggtgcacatccgcctcatcgccggggaac 455 |||||||| |||||||| ||||| ||||| |||||||| | | | | |||||| |||| Sbjct: 20353575 ggcacgatcaggtcctcggcgccgtgccacaggtgcaccttccctttgccgccggcgaac 20353516 Query: 456 gggttctccatctccagcgggctccaaccccactttccgaacccgacgatcatgtc 511 |||| ||| | ||||||||||||||| | |||||| ||||| ||||| ||||||| Sbjct: 20353515 gggtcctcgagctccagcgggctccagctccacttcccgaatccgaccgtcatgtc 20353460 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 gatttaaagaagagacatga 90 |||||||||||||||||||| Sbjct: 31408889 gatttaaagaagagacatga 31408870
>dbj|AK102032.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033081A11, full insert sequence Length = 1293 Score = 63.9 bits (32), Expect = 5e-07 Identities = 95/116 (81%) Strand = Plus / Minus Query: 396 ggcacgatgaggtcctccgcgccatgccataggtgcacatccgcctcatcgccggggaac 455 |||||||| |||||||| ||||| ||||| |||||||| | | | | |||||| |||| Sbjct: 925 ggcacgatcaggtcctcggcgccgtgccacaggtgcaccttccctttgccgccggcgaac 866 Query: 456 gggttctccatctccagcgggctccaaccccactttccgaacccgacgatcatgtc 511 |||| ||| | ||||||||||||||| | |||||| ||||| ||||| ||||||| Sbjct: 865 gggtcctcgagctccagcgggctccagctccacttcccgaatccgaccgtcatgtc 810
>emb|BX537135.9| Zebrafish DNA sequence from clone DKEY-57B1 in linkage group 14, complete sequence Length = 108341 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Plus Query: 384 gagaggccaacgggcacgatgaggtc 409 |||||||| ||||||||||||||||| Sbjct: 24016 gagaggcccacgggcacgatgaggtc 24041
>emb|X01336.1|CURNA4 Cucumber mosaic virus (CMV) RNA4 3' terminal region Length = 267 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 446 gccggggaacgggttctccatc 467 |||||||||||||||||||||| Sbjct: 54 gccggggaacgggttctccatc 75
>emb|X01335.1|CURNA3 Cucumber mosaic virus (CMV) RNA3 3' terminal region Length = 267 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 446 gccggggaacgggttctccatc 467 |||||||||||||||||||||| Sbjct: 54 gccggggaacgggttctccatc 75
>dbj|AP001790.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-338H14, complete sequence Length = 175731 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 72 atttaaagaagagacatgaatt 93 |||||||||||||||||||||| Sbjct: 172179 atttaaagaagagacatgaatt 172158
>dbj|AP000820.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-644L4, complete sequence Length = 159644 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 72 atttaaagaagagacatgaatt 93 |||||||||||||||||||||| Sbjct: 85554 atttaaagaagagacatgaatt 85533
>gb|AY457577.1| Papilio macilentus voucher UASM 9900213 from Japan cytochrome oxidase subunit I (COI) gene, partial cds; tRNA-Leu gene, complete sequence; and cytochrome oxidase subunit II (COII) gene, complete cds; mitochondrial Length = 2291 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 61 aaaaagtaaggatttaaagaa 81 ||||||||||||||||||||| Sbjct: 1230 aaaaagtaaggatttaaagaa 1210
>gb|AY457572.1| Papilio bianor voucher UASM 9900099 from Taiwan cytochrome oxidase subunit I (COI) gene, partial cds; tRNA-Leu gene, complete sequence; and cytochrome oxidase subunit II (COII) gene, complete cds; mitochondrial Length = 2293 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 61 aaaaagtaaggatttaaagaa 81 ||||||||||||||||||||| Sbjct: 1232 aaaaagtaaggatttaaagaa 1212
>emb|Z83819.1|HS146H21 Human DNA sequence from clone RP1-146H21 on chromosome Xq22 Contains the 3' end of the CSTF2 gene for cleavage stimulation factor (3' pre-RNA, subunit 2, 64kDa), the NOX1 gene for NADPH oxidase 1 and two heterogeneous nuclear ribonucleoprotein A1 (HNRPA1) pseudogenes, complete sequence Length = 66424 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 160 acgttgttgaaagaaattaaa 180 ||||||||||||||||||||| Sbjct: 63166 acgttgttgaaagaaattaaa 63186
>emb|AL451065.13| Human DNA sequence from clone RP11-274J16 on chromosome 9 Contains the 3' end of the FGD3 gene for FGD1 family, member 3 (FLJ00004), a novel gene, a novel gene (MGC26847), a novel gene (MGC11115), the NINJ1 gene for ninjurin 1 and three CpG islands, complete sequence Length = 163689 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 160 acgttgttgaaagaaattaaa 180 ||||||||||||||||||||| Sbjct: 88463 acgttgttgaaagaaattaaa 88443
>emb|AL359262.9| Human DNA sequence from clone RP11-334O13 on chromosome 13 Contains a high-mobility group pseudogene, complete sequence Length = 162763 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 160 acgttgttgaaagaaattaaa 180 ||||||||||||||||||||| Sbjct: 1247 acgttgttgaaagaaattaaa 1267
>emb|BX914206.10| Zebrafish DNA sequence from clone CH211-174J14 in linkage group 18, complete sequence Length = 139321 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 163 ttgttgaaagaaattaaaaca 183 ||||||||||||||||||||| Sbjct: 90599 ttgttgaaagaaattaaaaca 90619
>emb|AL808027.14| Mouse DNA sequence from clone RP23-161B9 on chromosome 2, complete sequence Length = 241914 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 123 acacagaagcagcctctttgt 143 ||||||||||||||||||||| Sbjct: 50212 acacagaagcagcctctttgt 50192
>dbj|AB192473.1| Papilio okinawensis mitochondrial CO1 gene for cytochrome oxydase subunit 1, partial cds Length = 1408 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 61 aaaaagtaaggatttaaagaa 81 ||||||||||||||||||||| Sbjct: 1199 aaaaagtaaggatttaaagaa 1179
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 398 cacgatgaggtcctccgcgccatgc 422 |||||||| |||||||||||||||| Sbjct: 4413078 cacgatgacgtcctccgcgccatgc 4413054
>gb|AC098645.3| Papio anubis clone RP41-470J23, complete sequence Length = 193317 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 160 acgttgttgaaagaaattaaa 180 ||||||||||||||||||||| Sbjct: 181327 acgttgttgaaagaaattaaa 181347
>gb|AC098698.3| Papio anubis clone RP41-177A23, complete sequence Length = 165334 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 160 acgttgttgaaagaaattaaa 180 ||||||||||||||||||||| Sbjct: 21401 acgttgttgaaagaaattaaa 21421
>gb|AC027689.10|AC027689 Homo sapiens chromosome 18 clone RP11-245A17, complete sequence Length = 180573 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 163 ttgttgaaagaaattaaaaca 183 ||||||||||||||||||||| Sbjct: 68604 ttgttgaaagaaattaaaaca 68584
>dbj|AP005793.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-2N10, complete sequence Length = 51000 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 163 ttgttgaaagaaattaaaaca 183 ||||||||||||||||||||| Sbjct: 3548 ttgttgaaagaaattaaaaca 3568
>emb|AJ494839.1|SAU494839 Stigmatella aurantiaca partial sqs gene for squalene synthase and cas gene for cycloartenol synthase, strain Sg a15 Length = 3629 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 291 acatcccccatgccatcggccatgg 315 |||||| |||||||||||||||||| Sbjct: 347 acatccgccatgccatcggccatgg 323
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 ccatgccatcggccatgggg 317 |||||||||||||||||||| Sbjct: 2457248 ccatgccatcggccatgggg 2457267
>gb|AC164164.3| Mus musculus BAC clone RP23-180E6 from chromosome 12, complete sequence Length = 245260 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 aagtaaggatttaaagaaga 83 |||||||||||||||||||| Sbjct: 160315 aagtaaggatttaaagaaga 160296
>gb|AY430222.1| Regalecus glesne recombination activating protein 1 (RAG1) gene, partial cds Length = 1469 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 tgacatcccccatgccatcg 308 |||||||||||||||||||| Sbjct: 333 tgacatcccccatgccatcg 314
>gb|AY380535.1| Salvelinus malma recombination-activating protein 1 (RAG1) gene, partial cds Length = 1556 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 tgacatcccccatgccatcg 308 |||||||||||||||||||| Sbjct: 366 tgacatcccccatgccatcg 347
>gb|AC012162.11| Drosophila melanogaster clone BACR01N10, complete sequence Length = 169856 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 ttgaaagaaattaaaacaca 185 |||||||||||||||||||| Sbjct: 42427 ttgaaagaaattaaaacaca 42446
>gb|AC122461.3| Mus musculus BAC clone RP24-293D14 from chromosome 12, complete sequence Length = 172126 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 aagtaaggatttaaagaaga 83 |||||||||||||||||||| Sbjct: 13957 aagtaaggatttaaagaaga 13976
>emb|AL591790.1|SME591790 Sinorhizobium meliloti 1021 complete chromosome; segment 9/12 Length = 323450 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 286 ggatgacatcccccatgccatcggccat 313 ||||||||||| ||||||||| |||||| Sbjct: 125311 ggatgacatccgccatgccataggccat 125338
>gb|AC124429.4| Mus musculus BAC clone RP24-239N4 from chromosome 13, complete sequence Length = 168858 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 ttaaaacacaggagcacaaa 195 |||||||||||||||||||| Sbjct: 112050 ttaaaacacaggagcacaaa 112069
>gb|AC101969.6| Mus musculus chromosome 17, clone RP24-259G8, complete sequence Length = 219711 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 81 agagacatgaattagacatagagt 104 ||||||||| |||||||||||||| Sbjct: 29810 agagacatgtattagacatagagt 29787
>gb|AC141115.22| Medicago truncatula clone mth2-16b23, complete sequence Length = 126187 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 cacaaaaaacagtagcacac 209 |||||||||||||||||||| Sbjct: 104476 cacaaaaaacagtagcacac 104495
>emb|AL590608.6| Human DNA sequence from clone RP11-363F12 on chromosome 6, complete sequence Length = 200337 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 474 gggctccaaccccactttcc 493 |||||||||||||||||||| Sbjct: 178095 gggctccaaccccactttcc 178114
>ref|XM_500363.1| Yarrowia lipolytica CLIB122, YALI0B00880g predicted mRNA Length = 1743 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 482 accccactttccgaacccga 501 |||||||||||||||||||| Sbjct: 819 accccactttccgaacccga 800
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 430 gcacatccgcctcatcgccg 449 |||||||||||||||||||| Sbjct: 2921333 gcacatccgcctcatcgccg 2921314
>emb|AL606648.3|OSJN00093 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0093O08, complete sequence Length = 148860 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 gatttaaagaagagacatga 90 |||||||||||||||||||| Sbjct: 105697 gatttaaagaagagacatga 105678
>gb|AC153760.3| Loxodonta africana clone VMRC15-151E6, complete sequence Length = 130127 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 gttgttgaaagaaattaaaa 181 |||||||||||||||||||| Sbjct: 43499 gttgttgaaagaaattaaaa 43480
>gb|AC092491.6| Homo sapiens 12 BAC RP11-125G9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 103308 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 acacaggagcacaaaaaaca 200 |||||||||||||||||||| Sbjct: 74098 acacaggagcacaaaaaaca 74117
>gb|AC069421.9| Homo sapiens 3 BAC RP11-528A4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 157289 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 474 gggctccaaccccactttcc 493 |||||||||||||||||||| Sbjct: 59304 gggctccaaccccactttcc 59285
>gb|AC021660.16| Homo sapiens 3 BAC RP11-227H4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 164567 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 taaagaagagacatgaatta 94 |||||||||||||||||||| Sbjct: 75010 taaagaagagacatgaatta 74991
>dbj|AK045440.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230119K15 product:unclassifiable, full insert sequence Length = 1283 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 aagtaaggatttaaagaaga 83 |||||||||||||||||||| Sbjct: 514 aagtaaggatttaaagaaga 533
>dbj|AK044779.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library, clone:A930104C18 product:unclassifiable, full insert sequence Length = 1282 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 aagtaaggatttaaagaaga 83 |||||||||||||||||||| Sbjct: 514 aagtaaggatttaaagaaga 533
>ref|XM_391900.2| PREDICTED: Apis mellifera similar to CG8939-PA (LOC408348), mRNA Length = 2588 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 ttgaaagaaattaaaacaca 185 |||||||||||||||||||| Sbjct: 1335 ttgaaagaaattaaaacaca 1354
>gb|AY552034.1| Hypancistrus sp. CAC-2004 RAG1 gene, exon 3 and partial cds Length = 938 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 tgacatcccccatgccatcg 308 |||||||||||||||||||| Sbjct: 366 tgacatcccccatgccatcg 347
>gb|AC018474.31| Homo sapiens 12 BAC RP11-757E18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 172303 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 taagagcaagaaaaagtaag 70 |||||||||||||||||||| Sbjct: 146222 taagagcaagaaaaagtaag 146241
>gb|AC010730.11| Homo sapiens BAC clone RP11-357O18 from 2, complete sequence Length = 165951 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 474 gggctccaaccccactttcc 493 |||||||||||||||||||| Sbjct: 7627 gggctccaaccccactttcc 7608
>gb|AC010736.13| Homo sapiens BAC clone RP11-436F6 from 2, complete sequence Length = 204267 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 ttgttgaaagaaattaaaac 182 |||||||||||||||||||| Sbjct: 48500 ttgttgaaagaaattaaaac 48481
>gb|AC010967.3| Homo sapiens BAC clone RP11-7H13 from 2, complete sequence Length = 197328 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 472 gcgggctccaaccccacttt 491 |||||||||||||||||||| Sbjct: 106419 gcgggctccaaccccacttt 106438
>gb|AC008268.3|AC008268 Homo sapiens BAC clone RP11-34G16 from 2, complete sequence Length = 187883 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 474 gggctccaaccccactttcc 493 |||||||||||||||||||| Sbjct: 85978 gggctccaaccccactttcc 85997
>emb|AL442111.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0818E11, complete sequence Length = 88090 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 gatttaaagaagagacatga 90 |||||||||||||||||||| Sbjct: 75143 gatttaaagaagagacatga 75124
>emb|AL117264.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0313F03, complete sequence Length = 131195 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 gatttaaagaagagacatga 90 |||||||||||||||||||| Sbjct: 28886 gatttaaagaagagacatga 28867
>gb|AE003506.3| Drosophila melanogaster chromosome X, section 58 of 74 of the complete sequence Length = 302073 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 ttgaaagaaattaaaacaca 185 |||||||||||||||||||| Sbjct: 282277 ttgaaagaaattaaaacaca 282258
>emb|CT030140.12| Mouse DNA sequence from clone RP24-345D17 on chromosome 12, complete sequence Length = 198163 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 acatgaattagacatagagt 104 |||||||||||||||||||| Sbjct: 19658 acatgaattagacatagagt 19639
>gb|AC133513.3| Mus musculus BAC clone RP23-212E9 from 12, complete sequence Length = 177034 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 gaaaaagtaaggatttaaag 79 |||||||||||||||||||| Sbjct: 45219 gaaaaagtaaggatttaaag 45200
>emb|CT027993.6| Mouse DNA sequence from clone RP24-82E21 on chromosome 17, complete sequence Length = 241014 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 81 agagacatgaattagacatagagt 104 ||||||||| |||||||||||||| Sbjct: 129745 agagacatgtattagacatagagt 129722
>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica Length = 3066374 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 482 accccactttccgaacccga 501 |||||||||||||||||||| Sbjct: 146769 accccactttccgaacccga 146788
>gb|AC171209.1| Mus musculus BAC clone RP23-105E1 from chromosome 17, complete sequence Length = 212184 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 81 agagacatgaattagacatagagt 104 ||||||||| |||||||||||||| Sbjct: 67264 agagacatgtattagacatagagt 67241
>emb|AL683893.26| Mouse DNA sequence from clone RP23-122N18 on chromosome 4, complete sequence Length = 204841 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 56 gcaagaaaaagtaaggatttaaag 79 |||||||||||||| ||||||||| Sbjct: 2641 gcaagaaaaagtaatgatttaaag 2618
>dbj|AP000867.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-684B2, complete sequences Length = 199999 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 cttcttttacaaggttatat 51 |||||||||||||||||||| Sbjct: 157376 cttcttttacaaggttatat 157357 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,081,079 Number of Sequences: 3902068 Number of extensions: 5081079 Number of successful extensions: 103711 Number of sequences better than 10.0: 66 Number of HSP's better than 10.0 without gapping: 67 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 103435 Number of HSP's gapped (non-prelim): 264 length of query: 517 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 494 effective length of database: 17,143,297,704 effective search space: 8468789065776 effective search space used: 8468789065776 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)