ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart31f10 |
|---|---|
| Clone Library Name | barley_pub |
>CPSF5_XENLA (Q6DJE4) Cleavage and polyadenylation specificity factor 5| Length = 227 Score = 99.8 bits (247), Expect = 3e-21 Identities = 49/107 (45%), Positives = 67/107 (62%) Frame = -1 Query: 476 QGLKRKLSSKLAAEDRNGDHHWQIGECIGMWWRSEFDARPFPYPPPNTRASKECVKLFLV 297 +GLKR ++ L +D W I +CIG WWR F+ +PY P + KE KLFLV Sbjct: 119 EGLKRLMTEILGRQD-GVQQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLV 177 Query: 296 RLPMARQLVVPRNLKLLAVPLSQIHDNAQVYGPIISAIPNLLSKFSF 156 +L VP+N KL+A PL +++DNA YGPIIS++P LLS+F+F Sbjct: 178 QLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNF 224
>CPSF5_BRARE (Q7T3C6) Cleavage and polyadenylation specificity factor 5| Length = 228 Score = 99.4 bits (246), Expect = 4e-21 Identities = 49/107 (45%), Positives = 67/107 (62%) Frame = -1 Query: 476 QGLKRKLSSKLAAEDRNGDHHWQIGECIGMWWRSEFDARPFPYPPPNTRASKECVKLFLV 297 +GLKR ++ L +D W I +CIG WWR F+ +PY P + KE KLFLV Sbjct: 120 EGLKRLMTEILGRQD-GVKQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLV 178 Query: 296 RLPMARQLVVPRNLKLLAVPLSQIHDNAQVYGPIISAIPNLLSKFSF 156 +L VP+N KL+A PL +++DNA YGPIIS++P LLS+F+F Sbjct: 179 QLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNF 225
>CPSF5_RAT (Q4KM65) Cleavage and polyadenylation specificity factor 5| (Nucleoside diphosphate-linked moiety X motif 21) (Nudix motif 21) Length = 227 Score = 98.2 bits (243), Expect = 1e-20 Identities = 49/107 (45%), Positives = 67/107 (62%) Frame = -1 Query: 476 QGLKRKLSSKLAAEDRNGDHHWQIGECIGMWWRSEFDARPFPYPPPNTRASKECVKLFLV 297 +GLKR ++ L +D W I +CIG WWR F+ +PY P + KE KLFLV Sbjct: 119 EGLKRLMTEILGRQD-GVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLV 177 Query: 296 RLPMARQLVVPRNLKLLAVPLSQIHDNAQVYGPIISAIPNLLSKFSF 156 +L VP+N KL+A PL +++DNA YGPIIS++P LLS+F+F Sbjct: 178 QLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNF 224
>CPSF5_PONPY (Q5RAI8) Cleavage and polyadenylation specificity factor 5| (Nucleoside diphosphate-linked moiety X motif 21) (Nudix motif 21) Length = 227 Score = 98.2 bits (243), Expect = 1e-20 Identities = 49/107 (45%), Positives = 67/107 (62%) Frame = -1 Query: 476 QGLKRKLSSKLAAEDRNGDHHWQIGECIGMWWRSEFDARPFPYPPPNTRASKECVKLFLV 297 +GLKR ++ L +D W I +CIG WWR F+ +PY P + KE KLFLV Sbjct: 119 EGLKRLMTEILGRQD-GVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLV 177 Query: 296 RLPMARQLVVPRNLKLLAVPLSQIHDNAQVYGPIISAIPNLLSKFSF 156 +L VP+N KL+A PL +++DNA YGPIIS++P LLS+F+F Sbjct: 178 QLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNF 224
>CPSF5_MOUSE (Q9CQF3) Cleavage and polyadenylation specificity factor 5| (Nucleoside diphosphate-linked moiety X motif 21) (Nudix motif 21) Length = 227 Score = 98.2 bits (243), Expect = 1e-20 Identities = 49/107 (45%), Positives = 67/107 (62%) Frame = -1 Query: 476 QGLKRKLSSKLAAEDRNGDHHWQIGECIGMWWRSEFDARPFPYPPPNTRASKECVKLFLV 297 +GLKR ++ L +D W I +CIG WWR F+ +PY P + KE KLFLV Sbjct: 119 EGLKRLMTEILGRQD-GVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLV 177 Query: 296 RLPMARQLVVPRNLKLLAVPLSQIHDNAQVYGPIISAIPNLLSKFSF 156 +L VP+N KL+A PL +++DNA YGPIIS++P LLS+F+F Sbjct: 178 QLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNF 224
>CPSF5_HUMAN (O43809) Cleavage and polyadenylation specificity factor 5| (Cleavage and polyadenylation specificity factor 25 kDa subunit) (CPSF 25 kDa subunit) (Pre-mRNA cleavage factor Im 25-kDa subunit) (Nucleoside diphosphate-linked moiety X motif 21) ( Length = 227 Score = 98.2 bits (243), Expect = 1e-20 Identities = 49/107 (45%), Positives = 67/107 (62%) Frame = -1 Query: 476 QGLKRKLSSKLAAEDRNGDHHWQIGECIGMWWRSEFDARPFPYPPPNTRASKECVKLFLV 297 +GLKR ++ L +D W I +CIG WWR F+ +PY P + KE KLFLV Sbjct: 119 EGLKRLMTEILGRQD-GVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLV 177 Query: 296 RLPMARQLVVPRNLKLLAVPLSQIHDNAQVYGPIISAIPNLLSKFSF 156 +L VP+N KL+A PL +++DNA YGPIIS++P LLS+F+F Sbjct: 178 QLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNF 224
>CPSF5_BOVIN (Q3ZCA2) Cleavage and polyadenylation specificity factor 5| (Nucleoside diphosphate-linked moiety X motif 21) (Nudix motif 21) Length = 227 Score = 98.2 bits (243), Expect = 1e-20 Identities = 49/107 (45%), Positives = 67/107 (62%) Frame = -1 Query: 476 QGLKRKLSSKLAAEDRNGDHHWQIGECIGMWWRSEFDARPFPYPPPNTRASKECVKLFLV 297 +GLKR ++ L +D W I +CIG WWR F+ +PY P + KE KLFLV Sbjct: 119 EGLKRLMTEILGRQD-GVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLV 177 Query: 296 RLPMARQLVVPRNLKLLAVPLSQIHDNAQVYGPIISAIPNLLSKFSF 156 +L VP+N KL+A PL +++DNA YGPIIS++P LLS+F+F Sbjct: 178 QLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNF 224
>Y1967_SYNY3 (P73374) Hypothetical RNA methyltransferase sll1967 (EC 2.1.1.-)| Length = 463 Score = 30.4 bits (67), Expect = 2.5 Identities = 15/46 (32%), Positives = 25/46 (54%) Frame = -3 Query: 363 QAISISASKHTCIQGMRKAVLGQVAHGSPARGAEEPQAPSRAPVPD 226 QAI+I ++ + QG R A + Q+A+ G E P+ + +PD Sbjct: 340 QAIAIEVNQDSVHQGQRNAEINQIANVDFLAGTVETVLPTLSEIPD 385
>STAP2_MOUSE (Q8R0L1) Signal-transducing adaptor protein 2 (STAP-2)| Length = 411 Score = 30.4 bits (67), Expect = 2.5 Identities = 15/43 (34%), Positives = 20/43 (46%) Frame = -3 Query: 279 PARGAEEPQAPSRAPVPDSRQCSGVWANHICNSESALQVLLQR 151 PAR +P PS P PD + + VW + S S L+ R Sbjct: 349 PARLPAKPPKPSVVPKPDLKAITSVWTRKLGGSSSQASSLVTR 391
>RPB1_ENCCU (Q8SSC4) DNA-directed RNA polymerase II largest subunit (EC| 2.7.7.6) (RNA polymerase II subunit 1) Length = 1599 Score = 30.0 bits (66), Expect = 3.2 Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 1/27 (3%) Frame = -2 Query: 418 TTGRSASALACGGDQNSMPGHF-HIRL 341 TT R +CGGD S PGHF HI L Sbjct: 54 TTDRMYLCQSCGGDNFSCPGHFGHIEL 80
>KLF1_MOUSE (P46099) Krueppel-like factor 1 (Erythroid krueppel-like| transcription factor) (EKLF) (Erythroid transcription factor) Length = 358 Score = 30.0 bits (66), Expect = 3.2 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 4/50 (8%) Frame = -2 Query: 421 TTTGRSASALACG----GDQNSMPGHFHIRLQTHVHPRNA*SCSWSGCPW 284 T + +A CG G S H L+TH + +CSW GC W Sbjct: 266 TLAPKRQAAHTCGHEGCGKSYSKSSHLKAHLRTHTGEKPY-ACSWDGCDW 314
>RPA1_HUMAN (O95602) DNA-directed RNA polymerase I largest subunit (EC 2.7.7.6)| (RNA polymerase I 194 kDa subunit) (RPA194) Length = 1717 Score = 29.6 bits (65), Expect = 4.2 Identities = 11/30 (36%), Positives = 18/30 (60%) Frame = -1 Query: 449 KLAAEDRNGDHHWQIGECIGMWWRSEFDAR 360 KL +E+RNG W G + MW+ + ++R Sbjct: 1104 KLESENRNGRRPWDSGRMLRMWYELDEESR 1133
>ZBTB3_HUMAN (Q9H5J0) Zinc finger and BTB domain-containing protein 3| Length = 574 Score = 29.6 bits (65), Expect = 4.2 Identities = 18/50 (36%), Positives = 24/50 (48%) Frame = -3 Query: 249 PSRAPVPDSRQCSGVWANHICNSESALQVLLQRCKGLRRCFVSGGFVQGA 100 PS+AP P + V I S+ V ++ +G R F SGG V GA Sbjct: 340 PSQAPAPAEAELVQVKVEAIVISDEETDVSDEQPQGPERAFPSGGAVYGA 389
>K1C19_CHICK (O93256) Keratin, type I cytoskeletal 19 (Cytokeratin-19) (CK-19)| (Keratin-19) (K19) (GK-19) Length = 423 Score = 29.3 bits (64), Expect = 5.5 Identities = 17/44 (38%), Positives = 22/44 (50%) Frame = +1 Query: 250 SLRFLGTTSWRAMGNLTKNSFTHSLDARVFGGGYGNGLASNSDL 381 S RF+ + +G +F+ S A FGGGYG GL S L Sbjct: 47 SARFVSSGLGSGLGGGYGGAFSSSFSAG-FGGGYGGGLGSGDGL 89
>MLE_DROME (P24785) Dosage compensation regulator (EC 3.6.1.-) (ATP-dependent| RNA helicase mle) (Protein male-less) (Protein no action potential) Length = 1293 Score = 29.3 bits (64), Expect = 5.5 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = +1 Query: 289 GNLTKNSFTHSLDARVFGGGYGN 357 G T +SF + R FGGGYGN Sbjct: 1185 GRFTNSSFGRRGNGRTFGGGYGN 1207
>TREA_EMENI (P78617) Acid trehalase precursor (EC 3.2.1.28)| (Alpha,alpha-trehalase) (Alpha,alpha-trehalose glucohydrolase) Length = 1054 Score = 29.3 bits (64), Expect = 5.5 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = +1 Query: 358 GLASNSDLHHMPMHSPI 408 GLA N+ LHH+P H P+ Sbjct: 834 GLADNATLHHLPPHGPL 850
>PTC1_BRARE (Q98864) Protein patched homolog 1 (Patched 1) (PTC1)| Length = 1220 Score = 28.9 bits (63), Expect = 7.2 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = -3 Query: 309 AVLGQVAHGSPARGAEEPQAPSRAPVPDSRQCSGVWANHI 190 +++G A PA A Q+PS P+P G +A HI Sbjct: 1165 SLMGPPAEVVPANNANHLQSPSPEPMPPPMNHHGYYAGHI 1204
>CREA_BOTCI (O94130) DNA-binding protein creA (Carbon catabolite repressor)| Length = 435 Score = 28.9 bits (63), Expect = 7.2 Identities = 14/31 (45%), Positives = 16/31 (51%) Frame = +1 Query: 316 HSLDARVFGGGYGNGLASNSDLHHMPMHSPI 408 HS R FGGGY N LHH P +P+ Sbjct: 320 HSPRLRPFGGGYDLPGIRNLSLHHTPALAPM 350
>SEM6B_MOUSE (O54951) Semaphorin-6B precursor (Semaphorin VIB) (Sema VIB)| (Semaphorin N) (Sema N) Length = 886 Score = 28.9 bits (63), Expect = 7.2 Identities = 12/24 (50%), Positives = 18/24 (75%) Frame = -3 Query: 282 SPARGAEEPQAPSRAPVPDSRQCS 211 +PAR +E+PQ P+ P P+SR C+ Sbjct: 755 APARASEQPQVPAE-PGPESRLCA 777
>TB182_MOUSE (P58871) 182 kDa tankyrase 1-binding protein (Fragment)| Length = 909 Score = 28.9 bits (63), Expect = 7.2 Identities = 12/17 (70%), Positives = 13/17 (76%) Frame = -3 Query: 270 GAEEPQAPSRAPVPDSR 220 G EPQ PSRAP+P SR Sbjct: 671 GQGEPQEPSRAPLPSSR 687
>DLL_DROME (P20009) Homeotic protein distal-less (Protein brista)| Length = 327 Score = 28.9 bits (63), Expect = 7.2 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%) Frame = +1 Query: 265 GTTSWRAMGNLTKNSFTHSLDARVFGGGYGNGLASNSDLHHMPM-HSP 405 GT S +G N HS + GG G G S S H++P HSP Sbjct: 190 GTNSGMPLGGGGPNPGQHSPNQMHSGGNNGGGSNSGSPSHYLPPGHSP 237
>CU063_PANTR (Q68US5) Protein C21orf63 homolog precursor| Length = 441 Score = 28.9 bits (63), Expect = 7.2 Identities = 13/20 (65%), Positives = 15/20 (75%) Frame = -3 Query: 189 CNSESALQVLLQRCKGLRRC 130 C S SALQVL +RC G +RC Sbjct: 213 CLSYSALQVLSRRCYGKQRC 232
>CU063_HUMAN (P58658) Protein C21orf63 precursor (SUE21)| Length = 441 Score = 28.9 bits (63), Expect = 7.2 Identities = 13/20 (65%), Positives = 15/20 (75%) Frame = -3 Query: 189 CNSESALQVLLQRCKGLRRC 130 C S SALQVL +RC G +RC Sbjct: 213 CLSYSALQVLSRRCYGKQRC 232
>PREL_DROME (Q9V579) Protein preli-like| Length = 236 Score = 28.5 bits (62), Expect = 9.4 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 5/57 (8%) Frame = +1 Query: 238 GTARSLRFLGTTSWRAMGNLTKNSFTHSL-----DARVFGGGYGNGLASNSDLHHMP 393 G +R++R G ++A GN N F + L D+ V GG + + + + S +P Sbjct: 135 GFSRAIRAFGIERFKANGNKASNGFNYVLRRMFPDSLVGGGHHQHAVTTTSPAGELP 191
>NOTC4_HUMAN (Q99466) Neurogenic locus notch homolog protein 4 precursor (Notch 4)| (hNotch4) [Contains: Notch 4 extracellular truncation; Notch 4 intracellular domain] Length = 2003 Score = 28.5 bits (62), Expect = 9.4 Identities = 16/49 (32%), Positives = 23/49 (46%) Frame = -1 Query: 395 IGMWWRSEFDARPFPYPPPNTRASKECVKLFLVRLPMARQLVVPRNLKL 249 +G+W R + D R YP P RA + KL R P ++ P+ L Sbjct: 1325 VGLWVRKDRDGRDMVYPYPGARAEE---KLGGTRDPTYQERAAPQTQPL 1370
>UBR1_DROME (Q9VX91) Ubiquitin-protein ligase E3 component N-recognin (EC| 6.-.-.-) (Ubiquitin-protein ligase E3-alpha) Length = 1824 Score = 28.5 bits (62), Expect = 9.4 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%) Frame = +3 Query: 234 QGHG*ELEVP-RHHELASHGQPDQEQLYAFLGCTCVWRR 347 QGHG + +P H LA + Q Q+ +FL C+C++ R Sbjct: 1549 QGHGQTVVIPCESHHLALLLEYVQRQMSSFLRCSCLFYR 1587
>ITK_MOUSE (Q03526) Tyrosine-protein kinase ITK/TSK (EC 2.7.10.2)| (T-cell-specific kinase) (IL-2-inducible T-cell kinase) (Kinase EMT) (Kinase TLK) Length = 625 Score = 28.5 bits (62), Expect = 9.4 Identities = 10/26 (38%), Positives = 16/26 (61%) Frame = +1 Query: 28 SFFTNIVLSDSPCALHYYMANQKCSP 105 S FT ++S++PC HY++ SP Sbjct: 282 SVFTKAIISENPCIKHYHIKETNDSP 307
>BTBD1_MOUSE (P58544) BTB/POZ domain-containing protein 1 (Glucose signal| repressing protein) Length = 488 Score = 28.5 bits (62), Expect = 9.4 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%) Frame = -3 Query: 309 AVLGQVAHGSPARGAE-EPQAPSRAPVP 229 A LG A G PA GAE EP+ P+ P P Sbjct: 2 ASLGSAAAGEPATGAEAEPRPPAPPPPP 29 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,394,362 Number of Sequences: 219361 Number of extensions: 1857759 Number of successful extensions: 5675 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 5405 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5671 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3188886965 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
