ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart31f10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_482250.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1060 Score = 105 bits (53), Expect = 1e-19 Identities = 188/233 (80%) Strand = Plus / Minus Query: 181 ggaattgcagatatgattggcccatacacctgagcattgtcgtgaatctgggacaggggc 240 |||||| ||| |||||||| ||||| |||||||||||||| ||||||||||| || ||| Sbjct: 787 ggaattccagctatgattgagccatatacctgagcattgtcatgaatctgggatagaggc 728 Query: 241 acggctaggagcttgaggttcctcggcaccacgagctggcgagccatgggcaacctgacc 300 || ||||| ||||| | |||||| ||||| || | ||||||| || |||| | | | Sbjct: 727 acagctagcagcttcatgttccttggcacgacaaattggcgagacaccggcagtttaatc 668 Query: 301 aagaacagctttacgcattccttggatgcacgtgtgtttggaggcggatatggaaatggc 360 |||||||| |||| ||||||||| | |||||| | |||||| | ||||||||||||| Sbjct: 667 aagaacagttttatgcattcctttggtgcacgggcatttggaagtagatatggaaatgga 608 Query: 361 ctggcatcgaattctgatctccaccacatgccaatgcactcgccgatctgcca 413 ||||| || || |||||||||||||| ||||||||||| || |||||||| Sbjct: 607 gcagcatcaaactcagatctccaccacatcccaatgcactctccaatctgcca 555
>ref|XM_507225.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1198_B10.21 mRNA Length = 1105 Score = 105 bits (53), Expect = 1e-19 Identities = 188/233 (80%) Strand = Plus / Minus Query: 181 ggaattgcagatatgattggcccatacacctgagcattgtcgtgaatctgggacaggggc 240 |||||| ||| |||||||| ||||| |||||||||||||| ||||||||||| || ||| Sbjct: 788 ggaattccagctatgattgagccatatacctgagcattgtcatgaatctgggatagaggc 729 Query: 241 acggctaggagcttgaggttcctcggcaccacgagctggcgagccatgggcaacctgacc 300 || ||||| ||||| | |||||| ||||| || | ||||||| || |||| | | | Sbjct: 728 acagctagcagcttcatgttccttggcacgacaaattggcgagacaccggcagtttaatc 669 Query: 301 aagaacagctttacgcattccttggatgcacgtgtgtttggaggcggatatggaaatggc 360 |||||||| |||| ||||||||| | |||||| | |||||| | ||||||||||||| Sbjct: 668 aagaacagttttatgcattcctttggtgcacgggcatttggaagtagatatggaaatgga 609 Query: 361 ctggcatcgaattctgatctccaccacatgccaatgcactcgccgatctgcca 413 ||||| || || |||||||||||||| ||||||||||| || |||||||| Sbjct: 608 gcagcatcaaactcagatctccaccacatcccaatgcactctccaatctgcca 556
>dbj|AK061260.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-B12, full insert sequence Length = 1105 Score = 105 bits (53), Expect = 1e-19 Identities = 188/233 (80%) Strand = Plus / Minus Query: 181 ggaattgcagatatgattggcccatacacctgagcattgtcgtgaatctgggacaggggc 240 |||||| ||| |||||||| ||||| |||||||||||||| ||||||||||| || ||| Sbjct: 787 ggaattccagctatgattgagccatatacctgagcattgtcatgaatctgggatagaggc 728 Query: 241 acggctaggagcttgaggttcctcggcaccacgagctggcgagccatgggcaacctgacc 300 || ||||| ||||| | |||||| ||||| || | ||||||| || |||| | | | Sbjct: 727 acagctagcagcttcatgttccttggcacgacaaattggcgagacaccggcagtttaatc 668 Query: 301 aagaacagctttacgcattccttggatgcacgtgtgtttggaggcggatatggaaatggc 360 |||||||| |||| ||||||||| | |||||| | |||||| | ||||||||||||| Sbjct: 667 aagaacagttttatgcattcctttggtgcacgggcatttggaagtagatatggaaatgga 608 Query: 361 ctggcatcgaattctgatctccaccacatgccaatgcactcgccgatctgcca 413 ||||| || || |||||||||||||| ||||||||||| || |||||||| Sbjct: 607 gcagcatcaaactcagatctccaccacatcccaatgcactctccaatctgcca 555
>dbj|AK099189.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023110C11, full insert sequence Length = 1060 Score = 97.6 bits (49), Expect = 3e-17 Identities = 187/233 (80%) Strand = Plus / Minus Query: 181 ggaattgcagatatgattggcccatacacctgagcattgtcgtgaatctgggacaggggc 240 |||||| ||| |||||||| ||||| |||||||||||||| ||||||||||| || ||| Sbjct: 787 ggaattccagctatgattgagccatatacctgagcattgtcatgaatctgggatagaggc 728 Query: 241 acggctaggagcttgaggttcctcggcaccacgagctggcgagccatgggcaacctgacc 300 || |||| ||||| | |||||| ||||| || | ||||||| || |||| | | | Sbjct: 727 acagctaacagcttcatgttccttggcacgacaaattggcgagacaccggcagtttaatc 668 Query: 301 aagaacagctttacgcattccttggatgcacgtgtgtttggaggcggatatggaaatggc 360 |||||||| |||| ||||||||| | |||||| | |||||| | ||||||||||||| Sbjct: 667 aagaacagttttatgcattcctttggtgcacgggcatttggaagtagatatggaaatgga 608 Query: 361 ctggcatcgaattctgatctccaccacatgccaatgcactcgccgatctgcca 413 ||||| || || |||||||||||||| ||||||||||| || |||||||| Sbjct: 607 gcagcatcaaactcagatctccaccacatcccaatgcactctccaatctgcca 555
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 60.0 bits (30), Expect = 7e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 208 acctgagcattgtcgtgaatctgggacaggggcacggctaggagcttgaggttcctcggc 267 |||||||||||||| ||||||||||| || ||||| ||||| ||||| | |||||| ||| Sbjct: 19024743 acctgagcattgtcatgaatctgggatagaggcacagctagcagcttcatgttccttggc 19024802 Query: 268 ac 269 || Sbjct: 19024803 ac 19024804 Score = 46.1 bits (23), Expect = 0.10 Identities = 47/55 (85%) Strand = Plus / Plus Query: 347 gatatggaaatggcctggcatcgaattctgatctccaccacatgccaatgcactc 401 ||||||||||||| ||||| || || |||||||||||||| ||||||||||| Sbjct: 19024993 gatatggaaatggagcagcatcaaactcagatctccaccacatcccaatgcactc 19025047
>dbj|AP003947.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1198_B10 Length = 119768 Score = 60.0 bits (30), Expect = 7e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 208 acctgagcattgtcgtgaatctgggacaggggcacggctaggagcttgaggttcctcggc 267 |||||||||||||| ||||||||||| || ||||| ||||| ||||| | |||||| ||| Sbjct: 109663 acctgagcattgtcatgaatctgggatagaggcacagctagcagcttcatgttccttggc 109722 Query: 268 ac 269 || Sbjct: 109723 ac 109724 Score = 46.1 bits (23), Expect = 0.10 Identities = 47/55 (85%) Strand = Plus / Plus Query: 347 gatatggaaatggcctggcatcgaattctgatctccaccacatgccaatgcactc 401 ||||||||||||| ||||| || || |||||||||||||| ||||||||||| Sbjct: 109913 gatatggaaatggagcagcatcaaactcagatctccaccacatcccaatgcactc 109967
>dbj|AP003904.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1051_A08 Length = 137583 Score = 60.0 bits (30), Expect = 7e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 208 acctgagcattgtcgtgaatctgggacaggggcacggctaggagcttgaggttcctcggc 267 |||||||||||||| ||||||||||| || ||||| ||||| ||||| | |||||| ||| Sbjct: 49530 acctgagcattgtcatgaatctgggatagaggcacagctagcagcttcatgttccttggc 49589 Query: 268 ac 269 || Sbjct: 49590 ac 49591 Score = 46.1 bits (23), Expect = 0.10 Identities = 47/55 (85%) Strand = Plus / Plus Query: 347 gatatggaaatggcctggcatcgaattctgatctccaccacatgccaatgcactc 401 ||||||||||||| ||||| || || |||||||||||||| ||||||||||| Sbjct: 49780 gatatggaaatggagcagcatcaaactcagatctccaccacatcccaatgcactc 49834
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 284 ccatgggcaacctgaccaagaa 305 |||||||||||||||||||||| Sbjct: 3351204 ccatgggcaacctgaccaagaa 3351225
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 396 gcactcgccgatctgccagtgg 417 |||||||||||||||||||||| Sbjct: 2874192 gcactcgccgatctgccagtgg 2874171
>ref|XM_414283.1| PREDICTED: Gallus gallus similar to gamma filamin protein (LOC415939), mRNA Length = 3203 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 394 atgcactcgccgatctgccag 414 ||||||||||||||||||||| Sbjct: 3031 atgcactcgccgatctgccag 3011 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 394 atgcactcgccgatctgccag 414 ||||||||||||||||||||| Sbjct: 2836 atgcactcgccgatctgccag 2816
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 421 tcgccgtttcgatcctcagccgct 444 ||||||||||||||| |||||||| Sbjct: 4994999 tcgccgtttcgatccgcagccgct 4994976
>emb|AL356603.11| Human DNA sequence from clone RP11-500B2 on chromosome 10 Contains part of the INPP5A gene for inositol polyphosphate-5-phosphatase 40kDa and two CpG islands, complete sequence Length = 112648 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 326 atgcacgtgtgtttggaggc 345 |||||||||||||||||||| Sbjct: 31982 atgcacgtgtgtttggaggc 32001
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 263 tcggcaccacgagctggcgagcca 286 ||||||||||||||||||| |||| Sbjct: 1259191 tcggcaccacgagctggcgcgcca 1259214
>gb|AC177808.2| Pan troglodytes BAC clone CH251-703A9 from chromosome unknown, complete sequence Length = 207792 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 gtgcaaacatagtcttatct 25 |||||||||||||||||||| Sbjct: 98070 gtgcaaacatagtcttatct 98089 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,196,246 Number of Sequences: 3902068 Number of extensions: 3196246 Number of successful extensions: 51698 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51584 Number of HSP's gapped (non-prelim): 110 length of query: 476 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 454 effective length of database: 17,147,199,772 effective search space: 7784828696488 effective search space used: 7784828696488 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
