ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart31f04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1QOR_YEAST (P38230) Probable quinone oxidoreductase (EC 1.6.5.5) ... 31 1.6
2SERC_RALSO (Q8Y0Z0) Phosphoserine aminotransferase (EC 2.6.1.52)... 31 1.6
3BUB1_HUMAN (O43683) Mitotic checkpoint serine/threonine-protein ... 30 3.6
4RL17_XANCP (Q9Z3E6) 50S ribosomal protein L17 29 6.2

>QOR_YEAST (P38230) Probable quinone oxidoreductase (EC 1.6.5.5)|
           (NADPH:quinone reductase)
          Length = 334

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -3

Query: 443 NELLSWLSKGLITVKISHTYRLTEAHLAFADLRDRKAVGKVMI 315
           +E    ++   + +KI  TY L +   A AD+  RK VGK+++
Sbjct: 288 DEFFGLVNSKKLNIKIYKTYPLRDYRTAAADIESRKTVGKLVL 330



to top

>SERC_RALSO (Q8Y0Z0) Phosphoserine aminotransferase (EC 2.6.1.52) (PSAT)|
          Length = 378

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
 Frame = -3

Query: 440 ELLSWLSKGLITVKISHTYRLTEAHL--AFADLRDRKAV 330
           E+LSW   G+  +++SH  R  E+ +  AFADLR+  AV
Sbjct: 36  EMLSWQGSGMSVMEMSHRGREFESIMAQAFADLRELLAV 74



to top

>BUB1_HUMAN (O43683) Mitotic checkpoint serine/threonine-protein kinase BUB1 (EC|
            2.7.11.1) (hBUB1) (BUB1A)
          Length = 1085

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 17/58 (29%), Positives = 22/58 (37%)
 Frame = +1

Query: 4    YGTRADYRALQSFCSPRGLFSHPPVSSLW*PGILIQQSNGFQHITYTNPDCNIYEELD 177
            +GT    +     C P GLF   P   +W         N F H+    PDC+    LD
Sbjct: 1000 FGTYMKVKNEGGECKPEGLFRRLPHLDMW---------NEFFHVMLNIPDCHHLPSLD 1048



to top

>RL17_XANCP (Q9Z3E6) 50S ribosomal protein L17|
          Length = 127

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 12/20 (60%), Positives = 17/20 (85%)
 Frame = -3

Query: 365 LAFADLRDRKAVGKVMIVMG 306
           LAFA LRD++AVGK+ + +G
Sbjct: 65  LAFARLRDKEAVGKLFVELG 84


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,492,741
Number of Sequences: 219361
Number of extensions: 1188689
Number of successful extensions: 2825
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2825
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top