ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart31f04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT017252.1| Zea mays clone EL01N0307G08.c mRNA sequence 125 1e-25
2gb|AY110644.1| Zea mays CL6173_1 mRNA sequence 109 8e-21
3gb|AC104271.2| Oryza sativa (japonica cultivar-group) chromosome... 84 5e-13
4gb|AC136225.2| Oryza sativa (japonica cultivar-group) chromosome... 84 5e-13
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 84 5e-13
6emb|AL356276.9| Human DNA sequence from clone RP11-367J7 on chro... 42 1.5
7gb|BT024007.1| Zea mays clone EL01N0403A09 mRNA sequence 42 1.5
8gb|AC134404.17| Mus musculus chromosome 3, clone RP24-321M14, co... 40 6.1
9gb|AC124579.3| Mus musculus BAC clone RP23-86P2 from chromosome ... 40 6.1
10ref|XM_725353.1| Plasmodium yoelii yoelii str. 17XNL multidrug r... 40 6.1
11emb|AL606606.3|OSJN00046 Oryza sativa genomic DNA, chromosome 4,... 40 6.1
12dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
13emb|AL442110.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 6.1
14gb|AC123880.18| Mus musculus chromosome 3, clone RP23-225M12, co... 40 6.1
15dbj|AP006667.1| Lotus japonicus genomic DNA, chromosome 5, clone... 40 6.1
16emb|AL772326.5| Mouse DNA sequence from clone RP23-267E14 on chr... 40 6.1

>gb|BT017252.1| Zea mays clone EL01N0307G08.c mRNA sequence
          Length = 1296

 Score =  125 bits (63), Expect = 1e-25
 Identities = 123/143 (86%)
 Strand = Plus / Minus

                                                                        
Query: 298  gctgaggagcccataacaatcatcactttgccgacggctttcctatctctcaagtcagca 357
            ||||||||| |||| ||||||||||||||||| || || ||||||||||||| | |||  
Sbjct: 1073 gctgaggaggccattacaatcatcactttgccaaccgccttcctatctctcagggcagag 1014

                                                                        
Query: 358  aaagcgagatgggcctcagtgagcctgtaggtgtgtgaaattttaactgttatcaaaccc 417
            ||||| |||||| |||||   || ||||||  ||||||||||| ||||||||||| ||||
Sbjct: 1013 aaagcaagatggacctcaacaagtctgtagcagtgtgaaatttgaactgttatcagaccc 954

                                   
Query: 418  tttgaaagccatgacaggagttc 440
            |||||||||||||||| ||||||
Sbjct: 953  tttgaaagccatgacaagagttc 931



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>gb|AY110644.1| Zea mays CL6173_1 mRNA sequence
          Length = 963

 Score =  109 bits (55), Expect = 8e-21
 Identities = 121/143 (84%)
 Strand = Plus / Minus

                                                                       
Query: 298 gctgaggagcccataacaatcatcactttgccgacggctttcctatctctcaagtcagca 357
           |||||||||||||| ||||||||||||||||| || || ||||||||||||| | |||  
Sbjct: 307 gctgaggagcccattacaatcatcactttgccaaccgccttcctatctctcagggcagag 248

                                                                       
Query: 358 aaagcgagatgggcctcagtgagcctgtaggtgtgtgaaattttaactgttatcaaaccc 417
           ||||| |||||| |||||   || ||||||  | | ||||||| ||||| ||||| ||||
Sbjct: 247 aaagcaagatggacctcaacaagtctgtagcagggggaaatttgaactggtatcagaccc 188

                                  
Query: 418 tttgaaagccatgacaggagttc 440
           |||||||||||||||| ||||||
Sbjct: 187 tttgaaagccatgacaagagttc 165



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>gb|AC104271.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1308_D01,
            complete sequence
          Length = 117724

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 78/90 (86%)
 Strand = Plus / Minus

                                                                        
Query: 284  agagtcttgattttgctgaggagcccataacaatcatcactttgccgacggctttcctat 343
            ||||||||||||||||||  |||||||| |||||||||||||| || ||||| ||||| |
Sbjct: 8938 agagtcttgattttgctggtgagcccatcacaatcatcactttaccaacggccttcctgt 8879

                                          
Query: 344  ctctcaagtcagcaaaagcgagatgggcct 373
            |||||| | | || ||||||||||| ||||
Sbjct: 8878 ctctcagggctgcgaaagcgagatgtgcct 8849



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                        
Query: 371  cctcagtgagcctgtaggtgtgtgaaattttaactgttatcaaaccctttgaaagccatg 430
            |||||| ||||||||| ||||| ||||| |  | | ||||||| ||||||||||||||||
Sbjct: 8178 cctcagggagcctgtaagtgtgggaaatctggatttttatcaacccctttgaaagccatg 8119

                      
Query: 431  acaggagttc 440
            | | ||||||
Sbjct: 8118 aaaagagttc 8109



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>gb|AC136225.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0022L07,
              complete sequence
          Length = 142134

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 78/90 (86%)
 Strand = Plus / Minus

                                                                          
Query: 284    agagtcttgattttgctgaggagcccataacaatcatcactttgccgacggctttcctat 343
              ||||||||||||||||||  |||||||| |||||||||||||| || ||||| ||||| |
Sbjct: 139485 agagtcttgattttgctggtgagcccatcacaatcatcactttaccaacggccttcctgt 139426

                                            
Query: 344    ctctcaagtcagcaaaagcgagatgggcct 373
              |||||| | | || ||||||||||| ||||
Sbjct: 139425 ctctcagggctgcgaaagcgagatgtgcct 139396



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                          
Query: 371    cctcagtgagcctgtaggtgtgtgaaattttaactgttatcaaaccctttgaaagccatg 430
              |||||| ||||||||| ||||| ||||| |  | | ||||||| ||||||||||||||||
Sbjct: 138725 cctcagggagcctgtaagtgtgggaaatctggatttttatcaacccctttgaaagccatg 138666

                        
Query: 431    acaggagttc 440
              | | ||||||
Sbjct: 138665 aaaagagttc 138656



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 78/90 (86%)
 Strand = Plus / Minus

                                                                            
Query: 284      agagtcttgattttgctgaggagcccataacaatcatcactttgccgacggctttcctat 343
                ||||||||||||||||||  |||||||| |||||||||||||| || ||||| ||||| |
Sbjct: 14280152 agagtcttgattttgctggtgagcccatcacaatcatcactttaccaacggccttcctgt 14280093

                                              
Query: 344      ctctcaagtcagcaaaagcgagatgggcct 373
                |||||| | | || ||||||||||| ||||
Sbjct: 14280092 ctctcagggctgcgaaagcgagatgtgcct 14280063



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                            
Query: 371      cctcagtgagcctgtaggtgtgtgaaattttaactgttatcaaaccctttgaaagccatg 430
                |||||| ||||||||| ||||| ||||| |  | | ||||||| ||||||||||||||||
Sbjct: 14279392 cctcagggagcctgtaagtgtgggaaatctggatttttatcaacccctttgaaagccatg 14279333

                          
Query: 431      acaggagttc 440
                | | ||||||
Sbjct: 14279332 aaaagagttc 14279323



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>emb|AL356276.9| Human DNA sequence from clone RP11-367J7 on chromosome 1 Contains the
            gene for Fc receptor-like protein 3 (FCRH3), a novel
            gene, a pseudogene similar to part of SON DNA binding
            protein (SON), a voltage-dependent anion channel 1
            (VDAC1) pseudogene, the SPAP1 gene for SH2 domain
            containing phosphatase anchor protein 1 and the 3' end of
            the gene for Fc receptor-like protein 1 (FCRH1), complete
            sequence
          Length = 160356

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 295  tttgctgaggagcccataaca 315
            |||||||||||||||||||||
Sbjct: 5074 tttgctgaggagcccataaca 5094



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>gb|BT024007.1| Zea mays clone EL01N0403A09 mRNA sequence
          Length = 1758

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 126 tcagcacataacttatacaaa 146
           |||||||||||||||||||||
Sbjct: 584 tcagcacataacttatacaaa 564



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>gb|AC134404.17| Mus musculus chromosome 3, clone RP24-321M14, complete sequence
          Length = 218224

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 370    gcctcagtgagcctgtaggt 389
              ||||||||||||||||||||
Sbjct: 195030 gcctcagtgagcctgtaggt 195049



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>gb|AC124579.3| Mus musculus BAC clone RP23-86P2 from chromosome 13, complete sequence
          Length = 167801

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 302   aggagcccataacaatcatc 321
             ||||||||||||||||||||
Sbjct: 76070 aggagcccataacaatcatc 76051



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>ref|XM_725353.1| Plasmodium yoelii yoelii str. 17XNL multidrug resistance protein
            (PY00245) partial mRNA
          Length = 4266

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 154  tgcaacatctatgaagaatt 173
            ||||||||||||||||||||
Sbjct: 3618 tgcaacatctatgaagaatt 3637



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>emb|AL606606.3|OSJN00046 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0005B05,
              complete sequence
          Length = 149134

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 236    atctgcagctgaaaagaact 255
              ||||||||||||||||||||
Sbjct: 105003 atctgcagctgaaaagaact 105022



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 236     atctgcagctgaaaagaact 255
               ||||||||||||||||||||
Sbjct: 6942132 atctgcagctgaaaagaact 6942151



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>emb|AL442110.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0512B01, complete
              sequence
          Length = 140069

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 236    atctgcagctgaaaagaact 255
              ||||||||||||||||||||
Sbjct: 136102 atctgcagctgaaaagaact 136121



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>gb|AC123880.18| Mus musculus chromosome 3, clone RP23-225M12, complete sequence
          Length = 224562

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 370   gcctcagtgagcctgtaggt 389
             ||||||||||||||||||||
Sbjct: 48664 gcctcagtgagcctgtaggt 48683



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>dbj|AP006667.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT31L14, TM0366,
             complete sequence
          Length = 100936

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 395   aaattttaactgttatcaaa 414
             ||||||||||||||||||||
Sbjct: 95639 aaattttaactgttatcaaa 95658



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>emb|AL772326.5| Mouse DNA sequence from clone RP23-267E14 on chromosome 4, complete
            sequence
          Length = 165398

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 226  attctgcagaatctgcagct 245
            ||||||||||||||||||||
Sbjct: 5433 attctgcagaatctgcagct 5452


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,013,566
Number of Sequences: 3902068
Number of extensions: 4013566
Number of successful extensions: 72475
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72417
Number of HSP's gapped (non-prelim): 57
length of query: 451
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 429
effective length of database: 17,147,199,772
effective search space: 7356148702188
effective search space used: 7356148702188
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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