Clone Name | rbart31f04 |
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Clone Library Name | barley_pub |
>gb|BT017252.1| Zea mays clone EL01N0307G08.c mRNA sequence Length = 1296 Score = 125 bits (63), Expect = 1e-25 Identities = 123/143 (86%) Strand = Plus / Minus Query: 298 gctgaggagcccataacaatcatcactttgccgacggctttcctatctctcaagtcagca 357 ||||||||| |||| ||||||||||||||||| || || ||||||||||||| | ||| Sbjct: 1073 gctgaggaggccattacaatcatcactttgccaaccgccttcctatctctcagggcagag 1014 Query: 358 aaagcgagatgggcctcagtgagcctgtaggtgtgtgaaattttaactgttatcaaaccc 417 ||||| |||||| ||||| || |||||| ||||||||||| ||||||||||| |||| Sbjct: 1013 aaagcaagatggacctcaacaagtctgtagcagtgtgaaatttgaactgttatcagaccc 954 Query: 418 tttgaaagccatgacaggagttc 440 |||||||||||||||| |||||| Sbjct: 953 tttgaaagccatgacaagagttc 931
>gb|AY110644.1| Zea mays CL6173_1 mRNA sequence Length = 963 Score = 109 bits (55), Expect = 8e-21 Identities = 121/143 (84%) Strand = Plus / Minus Query: 298 gctgaggagcccataacaatcatcactttgccgacggctttcctatctctcaagtcagca 357 |||||||||||||| ||||||||||||||||| || || ||||||||||||| | ||| Sbjct: 307 gctgaggagcccattacaatcatcactttgccaaccgccttcctatctctcagggcagag 248 Query: 358 aaagcgagatgggcctcagtgagcctgtaggtgtgtgaaattttaactgttatcaaaccc 417 ||||| |||||| ||||| || |||||| | | ||||||| ||||| ||||| |||| Sbjct: 247 aaagcaagatggacctcaacaagtctgtagcagggggaaatttgaactggtatcagaccc 188 Query: 418 tttgaaagccatgacaggagttc 440 |||||||||||||||| |||||| Sbjct: 187 tttgaaagccatgacaagagttc 165
>gb|AC104271.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1308_D01, complete sequence Length = 117724 Score = 83.8 bits (42), Expect = 5e-13 Identities = 78/90 (86%) Strand = Plus / Minus Query: 284 agagtcttgattttgctgaggagcccataacaatcatcactttgccgacggctttcctat 343 |||||||||||||||||| |||||||| |||||||||||||| || ||||| ||||| | Sbjct: 8938 agagtcttgattttgctggtgagcccatcacaatcatcactttaccaacggccttcctgt 8879 Query: 344 ctctcaagtcagcaaaagcgagatgggcct 373 |||||| | | || ||||||||||| |||| Sbjct: 8878 ctctcagggctgcgaaagcgagatgtgcct 8849 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Minus Query: 371 cctcagtgagcctgtaggtgtgtgaaattttaactgttatcaaaccctttgaaagccatg 430 |||||| ||||||||| ||||| ||||| | | | ||||||| |||||||||||||||| Sbjct: 8178 cctcagggagcctgtaagtgtgggaaatctggatttttatcaacccctttgaaagccatg 8119 Query: 431 acaggagttc 440 | | |||||| Sbjct: 8118 aaaagagttc 8109
>gb|AC136225.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0022L07, complete sequence Length = 142134 Score = 83.8 bits (42), Expect = 5e-13 Identities = 78/90 (86%) Strand = Plus / Minus Query: 284 agagtcttgattttgctgaggagcccataacaatcatcactttgccgacggctttcctat 343 |||||||||||||||||| |||||||| |||||||||||||| || ||||| ||||| | Sbjct: 139485 agagtcttgattttgctggtgagcccatcacaatcatcactttaccaacggccttcctgt 139426 Query: 344 ctctcaagtcagcaaaagcgagatgggcct 373 |||||| | | || ||||||||||| |||| Sbjct: 139425 ctctcagggctgcgaaagcgagatgtgcct 139396 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Minus Query: 371 cctcagtgagcctgtaggtgtgtgaaattttaactgttatcaaaccctttgaaagccatg 430 |||||| ||||||||| ||||| ||||| | | | ||||||| |||||||||||||||| Sbjct: 138725 cctcagggagcctgtaagtgtgggaaatctggatttttatcaacccctttgaaagccatg 138666 Query: 431 acaggagttc 440 | | |||||| Sbjct: 138665 aaaagagttc 138656
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 83.8 bits (42), Expect = 5e-13 Identities = 78/90 (86%) Strand = Plus / Minus Query: 284 agagtcttgattttgctgaggagcccataacaatcatcactttgccgacggctttcctat 343 |||||||||||||||||| |||||||| |||||||||||||| || ||||| ||||| | Sbjct: 14280152 agagtcttgattttgctggtgagcccatcacaatcatcactttaccaacggccttcctgt 14280093 Query: 344 ctctcaagtcagcaaaagcgagatgggcct 373 |||||| | | || ||||||||||| |||| Sbjct: 14280092 ctctcagggctgcgaaagcgagatgtgcct 14280063 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Minus Query: 371 cctcagtgagcctgtaggtgtgtgaaattttaactgttatcaaaccctttgaaagccatg 430 |||||| ||||||||| ||||| ||||| | | | ||||||| |||||||||||||||| Sbjct: 14279392 cctcagggagcctgtaagtgtgggaaatctggatttttatcaacccctttgaaagccatg 14279333 Query: 431 acaggagttc 440 | | |||||| Sbjct: 14279332 aaaagagttc 14279323
>emb|AL356276.9| Human DNA sequence from clone RP11-367J7 on chromosome 1 Contains the gene for Fc receptor-like protein 3 (FCRH3), a novel gene, a pseudogene similar to part of SON DNA binding protein (SON), a voltage-dependent anion channel 1 (VDAC1) pseudogene, the SPAP1 gene for SH2 domain containing phosphatase anchor protein 1 and the 3' end of the gene for Fc receptor-like protein 1 (FCRH1), complete sequence Length = 160356 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 295 tttgctgaggagcccataaca 315 ||||||||||||||||||||| Sbjct: 5074 tttgctgaggagcccataaca 5094
>gb|BT024007.1| Zea mays clone EL01N0403A09 mRNA sequence Length = 1758 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 126 tcagcacataacttatacaaa 146 ||||||||||||||||||||| Sbjct: 584 tcagcacataacttatacaaa 564
>gb|AC134404.17| Mus musculus chromosome 3, clone RP24-321M14, complete sequence Length = 218224 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 370 gcctcagtgagcctgtaggt 389 |||||||||||||||||||| Sbjct: 195030 gcctcagtgagcctgtaggt 195049
>gb|AC124579.3| Mus musculus BAC clone RP23-86P2 from chromosome 13, complete sequence Length = 167801 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 aggagcccataacaatcatc 321 |||||||||||||||||||| Sbjct: 76070 aggagcccataacaatcatc 76051
>ref|XM_725353.1| Plasmodium yoelii yoelii str. 17XNL multidrug resistance protein (PY00245) partial mRNA Length = 4266 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 tgcaacatctatgaagaatt 173 |||||||||||||||||||| Sbjct: 3618 tgcaacatctatgaagaatt 3637
>emb|AL606606.3|OSJN00046 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0005B05, complete sequence Length = 149134 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 atctgcagctgaaaagaact 255 |||||||||||||||||||| Sbjct: 105003 atctgcagctgaaaagaact 105022
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 atctgcagctgaaaagaact 255 |||||||||||||||||||| Sbjct: 6942132 atctgcagctgaaaagaact 6942151
>emb|AL442110.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0512B01, complete sequence Length = 140069 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 atctgcagctgaaaagaact 255 |||||||||||||||||||| Sbjct: 136102 atctgcagctgaaaagaact 136121
>gb|AC123880.18| Mus musculus chromosome 3, clone RP23-225M12, complete sequence Length = 224562 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 370 gcctcagtgagcctgtaggt 389 |||||||||||||||||||| Sbjct: 48664 gcctcagtgagcctgtaggt 48683
>dbj|AP006667.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT31L14, TM0366, complete sequence Length = 100936 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 aaattttaactgttatcaaa 414 |||||||||||||||||||| Sbjct: 95639 aaattttaactgttatcaaa 95658
>emb|AL772326.5| Mouse DNA sequence from clone RP23-267E14 on chromosome 4, complete sequence Length = 165398 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 attctgcagaatctgcagct 245 |||||||||||||||||||| Sbjct: 5433 attctgcagaatctgcagct 5452 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,013,566 Number of Sequences: 3902068 Number of extensions: 4013566 Number of successful extensions: 72475 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72417 Number of HSP's gapped (non-prelim): 57 length of query: 451 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 429 effective length of database: 17,147,199,772 effective search space: 7356148702188 effective search space used: 7356148702188 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)