ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart31e08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY736120.1| Triticum aestivum 20S proteasome beta 7 subunit m... 412 e-112
2dbj|AK104212.1| Oryza sativa (japonica cultivar-group) cDNA clon... 270 4e-69
3dbj|AK103975.1| Oryza sativa (japonica cultivar-group) cDNA clon... 270 4e-69
4dbj|AK071380.1| Oryza sativa (japonica cultivar-group) cDNA clon... 270 4e-69
5dbj|AB026568.1| Oryza sativa (japonica cultivar-group) OsPBG1 mR... 270 4e-69
6gb|AY104193.1| Zea mays PCO143176 mRNA sequence 212 9e-52
7gb|BT018203.1| Zea mays clone EL01N0560A08.c mRNA sequence 206 5e-50
8gb|AC108755.2| Oryza sativa (japonica cultivar-group) chromosome... 186 5e-44
9dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 186 5e-44
10dbj|AP006756.2| Oryza sativa (japonica cultivar-group) genomic D... 186 5e-44
11gb|BC047415.1| Homo sapiens cancer susceptibility candidate 1, m... 48 0.030
12ref|NM_018272.2| Homo sapiens cancer susceptibility candidate 1 ... 48 0.030
13gb|AY423543.1| Homo sapiens lung adenoma susceptibility 1-like p... 48 0.030
14gb|BC057795.1| Homo sapiens hypothetical protein FLJ10921, mRNA ... 48 0.030
15gb|BC028415.1| Homo sapiens cancer susceptibility candidate 1, m... 48 0.030
16gb|BC031047.1| Homo sapiens cancer susceptibility candidate 1, m... 48 0.030
17dbj|AK093102.1| Homo sapiens cDNA FLJ35783 fis, clone TESTI20055... 48 0.030
18dbj|AK001783.1| Homo sapiens cDNA FLJ10921 fis, clone OVARC1000411 48 0.030
19dbj|AB168925.1| Macaca fascicularis testis cDNA, clone: QtsA-158... 48 0.030
20ref|XM_875888.1| PREDICTED: Bos taurus similar to vesicle amine ... 44 0.47
21ref|XM_587873.2| PREDICTED: Bos taurus similar to vesicle amine ... 44 0.47
22gb|AF092915.1|AF092915 Nicotiana tabacum cytochrome P450-depende... 44 0.47
23gb|AY391256.1| Lessardia elongata heat shock protein 90 gene, pa... 42 1.9
24gb|AC121788.3| Mus musculus BAC clone RP23-395N2 from chromosome... 42 1.9
25gb|AC011711.8| Homo sapiens chromosome 11, clone RP11-309J20, co... 42 1.9
26gb|AC018375.8| Homo sapiens, clone RP11-3P24, complete sequence 42 1.9
27gb|AF347086.1| Trechispora kavinioides isolate 260 5.8S ribosoma... 40 7.4
28gb|AC149057.7| Mus musculus BAC clone RP23-345D18 from chromosom... 40 7.4
29gb|AE017353.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 7.4
30gb|AC100600.22| Mus musculus chromosome 9, clone RP23-157H17, co... 40 7.4
31gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 7.4
32gb|AC135962.4| Mus musculus BAC clone RP23-342H15 from chromosom... 40 7.4
33gb|AC165962.4| Mus musculus BAC clone RP23-362B7 from chromosome... 40 7.4
34gb|AF384808.1| Cryptococcus neoformans var. grubii heat-shock pr... 40 7.4
35gb|AF384807.1| Cryptococcus bacillisporus heat-shock protein 90 ... 40 7.4
36ref|XM_568451.1| Cryptococcus neoformans var. neoformans JEC21 c... 40 7.4
37gb|AC140359.2| Mus musculus BAC clone RP24-240P8 from chromosome... 40 7.4
38gb|AC126556.4| Mus musculus BAC clone RP23-64L3 from chromosome ... 40 7.4
39gb|AC125544.4| Mus musculus BAC clone RP23-364A24 from chromosom... 40 7.4
40gb|AC127323.3| Mus musculus BAC clone RP23-242D19 from 18, compl... 40 7.4
41gb|AC112270.3| Mus musculus BAC clone RP24-117A22 from 5, comple... 40 7.4
42ref|XM_793815.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 7.4
43emb|AL928631.4| Mouse DNA sequence from clone RP23-240K15 on chr... 40 7.4
44emb|CR857815.1| Pongo pygmaeus mRNA; cDNA DKFZp459M0261 (from cl... 40 7.4
45gb|AC002524.1| Homo sapiens x BAC GS1-257G1 (Genome Systems Huma... 40 7.4
46gb|AC025041.7|AC025041 Homo sapiens chromosome 15 clone RP11-316... 40 7.4
47gb|AY691910.1| Uncultured bacterium clone HZ27 unknown sequence 40 7.4
48emb|BX324159.6| Zebrafish DNA sequence from clone CH211-10O1 in ... 40 7.4
49gb|AC151602.4| Mus musculus BAC clone RP23-218K15 from chromosom... 40 7.4
50emb|BX088719.6| Zebrafish DNA sequence from clone CH211-207H2 in... 40 7.4 
>gb|AY736120.1| Triticum aestivum 20S proteasome beta 7 subunit mRNA, complete cds
          Length = 694

 Score =  412 bits (208), Expect = e-112
 Identities = 241/252 (95%)
 Strand = Plus / Minus

                                                                       
Query: 292 taccatgttcctacagcacccttggacgggttctcaaaggcagcaaacccccagttggtc 351
           |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 688 taccatgttcctacagcacccttggatgggttctcaaaggcggcaaacccccagttggtc 629

                                                                       
Query: 352 ttcagggcatacggtgggtagatggtcgatccctcggtcgtgatcttggcaatctggaat 411
           |||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 628 ttcagggcatacggcgggtagatggttgatccctcggttgtgatcttggcaatctggaat 569

                                                                       
Query: 412 ttgttgatagatgatcggtcacggtacagcaggacaagcaagcacttctcaatgagctta 471
           |||||||| ||||| |||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 568 ttgttgatggatgaccggtcacggtacagcaggaccagcaagcacttctcaatcagctta 509

                                                                       
Query: 472 acagcttcttcaaaagtcatgtcctcacgccattcaccacgaaggattgggattgccata 531
           |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 508 acagcttcttcaaaagtcatgtcctcgcgccattcaccacgaagtattgggattgccata 449

                       
Query: 532 tggttcccaaat 543
           ||||||||||||
Sbjct: 448 tggttcccaaat 437
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>dbj|AK104212.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-D09, full
           insert sequence
          Length = 1005

 Score =  270 bits (136), Expect = 4e-69
 Identities = 223/252 (88%)
 Strand = Plus / Minus

                                                                       
Query: 291 ctaccatgttcctacagcacccttggacgggttctcaaaggcagcaaacccccagttggt 350
           |||||||| |||||||||||||| || ||| || ||||||||||| || |||||||  ||
Sbjct: 789 ctaccatgatcctacagcaccctgggccggattttcaaaggcagcgaagccccagtaagt 730

                                                                       
Query: 351 cttcagggcatacggtgggtagatggtcgatccctcggtcgtgatcttggcaatctggaa 410
           |||||  |  || || ||||||||||||| |||||| || ||||||||||||||||||||
Sbjct: 729 cttcaatgagtatggcgggtagatggtcgctccctcagttgtgatcttggcaatctggaa 670

                                                                       
Query: 411 tttgttgatagatgatcggtcacggtacagcaggacaagcaagcacttctcaatgagctt 470
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 669 cttgttaatagatgatcggtcacggtacagcaggacaagcaagcacttctcaacaagctt 610

                                                                       
Query: 471 aacagcttcttcaaaagtcatgtcctcacgccattcaccacgaaggattgggattgccat 530
            |||||||| ||||| ||||||||||| |||||||||  |||||| ||||||||||||||
Sbjct: 609 gacagcttcctcaaatgtcatgtcctcgcgccattcagtacgaagtattgggattgccat 550

                       
Query: 531 atggttcccaaa 542
           ||||||||||||
Sbjct: 549 atggttcccaaa 538
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>dbj|AK103975.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-F06, full
           insert sequence
          Length = 985

 Score =  270 bits (136), Expect = 4e-69
 Identities = 223/252 (88%)
 Strand = Plus / Minus

                                                                       
Query: 291 ctaccatgttcctacagcacccttggacgggttctcaaaggcagcaaacccccagttggt 350
           |||||||| |||||||||||||| || ||| || ||||||||||| || |||||||  ||
Sbjct: 856 ctaccatgatcctacagcaccctgggccggattttcaaaggcagcgaagccccagtaagt 797

                                                                       
Query: 351 cttcagggcatacggtgggtagatggtcgatccctcggtcgtgatcttggcaatctggaa 410
           |||||  |  || || ||||||||||||| |||||| || ||||||||||||||||||||
Sbjct: 796 cttcaatgagtatggcgggtagatggtcgctccctcagttgtgatcttggcaatctggaa 737

                                                                       
Query: 411 tttgttgatagatgatcggtcacggtacagcaggacaagcaagcacttctcaatgagctt 470
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 736 cttgttaatagatgatcggtcacggtacagcaggacaagcaagcacttctcaacaagctt 677

                                                                       
Query: 471 aacagcttcttcaaaagtcatgtcctcacgccattcaccacgaaggattgggattgccat 530
            |||||||| ||||| ||||||||||| |||||||||  |||||| ||||||||||||||
Sbjct: 676 gacagcttcctcaaatgtcatgtcctcgcgccattcagtacgaagtattgggattgccat 617

                       
Query: 531 atggttcccaaa 542
           ||||||||||||
Sbjct: 616 atggttcccaaa 605
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>dbj|AK071380.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023091G01, full
           insert sequence
          Length = 1090

 Score =  270 bits (136), Expect = 4e-69
 Identities = 223/252 (88%)
 Strand = Plus / Minus

                                                                       
Query: 291 ctaccatgttcctacagcacccttggacgggttctcaaaggcagcaaacccccagttggt 350
           |||||||| |||||||||||||| || ||| || ||||||||||| || |||||||  ||
Sbjct: 874 ctaccatgatcctacagcaccctgggccggattttcaaaggcagcgaagccccagtaagt 815

                                                                       
Query: 351 cttcagggcatacggtgggtagatggtcgatccctcggtcgtgatcttggcaatctggaa 410
           |||||  |  || || ||||||||||||| |||||| || ||||||||||||||||||||
Sbjct: 814 cttcaatgagtatggcgggtagatggtcgctccctcagttgtgatcttggcaatctggaa 755

                                                                       
Query: 411 tttgttgatagatgatcggtcacggtacagcaggacaagcaagcacttctcaatgagctt 470
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 754 cttgttaatagatgatcggtcacggtacagcaggacaagcaagcacttctcaacaagctt 695

                                                                       
Query: 471 aacagcttcttcaaaagtcatgtcctcacgccattcaccacgaaggattgggattgccat 530
            |||||||| ||||| ||||||||||| |||||||||  |||||| ||||||||||||||
Sbjct: 694 gacagcttcctcaaatgtcatgtcctcgcgccattcagtacgaagtattgggattgccat 635

                       
Query: 531 atggttcccaaa 542
           ||||||||||||
Sbjct: 634 atggttcccaaa 623
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>dbj|AB026568.1| Oryza sativa (japonica cultivar-group) OsPBG1 mRNA for beta 7
           subunit of 20S proteasome, complete cds
          Length = 1118

 Score =  270 bits (136), Expect = 4e-69
 Identities = 223/252 (88%)
 Strand = Plus / Minus

                                                                       
Query: 291 ctaccatgttcctacagcacccttggacgggttctcaaaggcagcaaacccccagttggt 350
           |||||||| |||||||||||||| || ||| || ||||||||||| || |||||||  ||
Sbjct: 875 ctaccatgatcctacagcaccctgggccggattttcaaaggcagcgaagccccagtaagt 816

                                                                       
Query: 351 cttcagggcatacggtgggtagatggtcgatccctcggtcgtgatcttggcaatctggaa 410
           |||||  |  || || ||||||||||||| |||||| || ||||||||||||||||||||
Sbjct: 815 cttcaatgagtatggcgggtagatggtcgctccctcagttgtgatcttggcaatctggaa 756

                                                                       
Query: 411 tttgttgatagatgatcggtcacggtacagcaggacaagcaagcacttctcaatgagctt 470
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 755 cttgttaatagatgatcggtcacggtacagcaggacaagcaagcacttctcaacaagctt 696

                                                                       
Query: 471 aacagcttcttcaaaagtcatgtcctcacgccattcaccacgaaggattgggattgccat 530
            |||||||| ||||| ||||||||||| |||||||||  |||||| ||||||||||||||
Sbjct: 695 gacagcttcctcaaatgtcatgtcctcgcgccattcagtacgaagtattgggattgccat 636

                       
Query: 531 atggttcccaaa 542
           ||||||||||||
Sbjct: 635 atggttcccaaa 624
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>gb|AY104193.1| Zea mays PCO143176 mRNA sequence
          Length = 1187

 Score =  212 bits (107), Expect = 9e-52
 Identities = 206/239 (86%)
 Strand = Plus / Minus

                                                                       
Query: 291 ctaccatgttcctacagcacccttggacgggttctcaaaggcagcaaacccccagttggt 350
           |||||||| ||| ||||| |||| ||  ||||| ||||||  ||  || ||||||| |||
Sbjct: 994 ctaccatgatcccacagcgccctgggctgggttttcaaagtgagagaagccccagtaggt 935

                                                                       
Query: 351 cttcagggcatacggtgggtagatggtcgatccctcggtcgtgatcttggcaatctggaa 410
           ||||| || ||| |||||||||||||| ||||| || || ||||||||||||||||||||
Sbjct: 934 cttcaaggaatatggtgggtagatggttgatccttcagttgtgatcttggcaatctggaa 875

                                                                       
Query: 411 tttgttgatagatgatcggtcacggtacagcaggacaagcaagcacttctcaatgagctt 470
           ||||||||||||||| | |||||||||||||| ||| ||||||||||||||||  |||||
Sbjct: 874 tttgttgatagatgacctgtcacggtacagcaagaccagcaagcacttctcaaccagctt 815

                                                                      
Query: 471 aacagcttcttcaaaagtcatgtcctcacgccattcaccacgaaggattgggattgcca 529
           ||||||||||||||||||||| ||||| ||||||||| |||| || || ||||| ||||
Sbjct: 814 aacagcttcttcaaaagtcatatcctcgcgccattcagcacggagtatcgggatcgcca 756
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>gb|BT018203.1| Zea mays clone EL01N0560A08.c mRNA sequence
          Length = 946

 Score =  206 bits (104), Expect = 5e-50
 Identities = 179/204 (87%)
 Strand = Plus / Minus

                                                                       
Query: 340 ccccagttggtcttcagggcatacggtgggtagatggtcgatccctcggtcgtgatcttg 399
           ||||||| |||||||| || ||| || ||||||||||| ||||| ||  | |||||||||
Sbjct: 843 ccccagtaggtcttcaaggaatatggggggtagatggttgatccttcccttgtgatcttg 784

                                                                       
Query: 400 gcaatctggaatttgttgatagatgatcggtcacggtacagcaggacaagcaagcacttc 459
           |||||||||||||||||||||||||||| ||| |||||||||| ||| | ||||||||||
Sbjct: 783 gcaatctggaatttgttgatagatgatctgtctcggtacagcaagaccaccaagcacttc 724

                                                                       
Query: 460 tcaatgagcttaacagcttcttcaaaagtcatgtcctcacgccattcaccacgaaggatt 519
           ||||  |||||||||||||||||||||||||| ||||| ||||||||| |||| || || 
Sbjct: 723 tcaaccagcttaacagcttcttcaaaagtcatatcctcgcgccattcagcacggagtatc 664

                                   
Query: 520 gggattgccatatggttcccaaat 543
           |||||||||||||| || ||||||
Sbjct: 663 gggattgccatatgatttccaaat 640
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>gb|AC108755.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
             OSJNBa0028C22, complete sequence
          Length = 154228

 Score =  186 bits (94), Expect = 5e-44
 Identities = 127/138 (92%)
 Strand = Plus / Plus

                                                                         
Query: 405   ctggaatttgttgatagatgatcggtcacggtacagcaggacaagcaagcacttctcaat 464
             |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 99589 ctggaacttgttaatagatgatcggtcacggtacagcaggacaagcaagcacttctcaac 99648

                                                                         
Query: 465   gagcttaacagcttcttcaaaagtcatgtcctcacgccattcaccacgaaggattgggat 524
              ||||| |||||||| ||||| ||||||||||| |||||||||  |||||| ||||||||
Sbjct: 99649 aagcttgacagcttcctcaaatgtcatgtcctcgcgccattcagtacgaagtattgggat 99708

                               
Query: 525   tgccatatggttcccaaa 542
             ||||||||||||||||||
Sbjct: 99709 tgccatatggttcccaaa 99726



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 98/116 (84%)
 Strand = Plus / Plus

                                                                         
Query: 291   ctaccatgttcctacagcacccttggacgggttctcaaaggcagcaaacccccagttggt 350
             |||||||| |||||||||||||| || ||| || ||||||||||| || |||||||  ||
Sbjct: 99378 ctaccatgatcctacagcaccctgggccggattttcaaaggcagcgaagccccagtaagt 99437

                                                                     
Query: 351   cttcagggcatacggtgggtagatggtcgatccctcggtcgtgatcttggcaatct 406
             |||||  |  || || ||||||||||||| |||||| || ||||||||||||||||
Sbjct: 99438 cttcaatgagtatggcgggtagatggtcgctccctcagttgtgatcttggcaatct 99493
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  186 bits (94), Expect = 5e-44
 Identities = 127/138 (92%)
 Strand = Plus / Plus

                                                                            
Query: 405      ctggaatttgttgatagatgatcggtcacggtacagcaggacaagcaagcacttctcaat 464
                |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 19772322 ctggaacttgttaatagatgatcggtcacggtacagcaggacaagcaagcacttctcaac 19772381

                                                                            
Query: 465      gagcttaacagcttcttcaaaagtcatgtcctcacgccattcaccacgaaggattgggat 524
                 ||||| |||||||| ||||| ||||||||||| |||||||||  |||||| ||||||||
Sbjct: 19772382 aagcttgacagcttcctcaaatgtcatgtcctcgcgccattcagtacgaagtattgggat 19772441

                                  
Query: 525      tgccatatggttcccaaa 542
                ||||||||||||||||||
Sbjct: 19772442 tgccatatggttcccaaa 19772459



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 98/116 (84%)
 Strand = Plus / Plus

                                                                            
Query: 291      ctaccatgttcctacagcacccttggacgggttctcaaaggcagcaaacccccagttggt 350
                |||||||| |||||||||||||| || ||| || ||||||||||| || |||||||  ||
Sbjct: 19772111 ctaccatgatcctacagcaccctgggccggattttcaaaggcagcgaagccccagtaagt 19772170

                                                                        
Query: 351      cttcagggcatacggtgggtagatggtcgatccctcggtcgtgatcttggcaatct 406
                |||||  |  || || ||||||||||||| |||||| || ||||||||||||||||
Sbjct: 19772171 cttcaatgagtatggcgggtagatggtcgctccctcagttgtgatcttggcaatct 19772226
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>dbj|AP006756.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0450E05
          Length = 176553

 Score =  186 bits (94), Expect = 5e-44
 Identities = 127/138 (92%)
 Strand = Plus / Plus

                                                                          
Query: 405    ctggaatttgttgatagatgatcggtcacggtacagcaggacaagcaagcacttctcaat 464
              |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 118008 ctggaacttgttaatagatgatcggtcacggtacagcaggacaagcaagcacttctcaac 118067

                                                                          
Query: 465    gagcttaacagcttcttcaaaagtcatgtcctcacgccattcaccacgaaggattgggat 524
               ||||| |||||||| ||||| ||||||||||| |||||||||  |||||| ||||||||
Sbjct: 118068 aagcttgacagcttcctcaaatgtcatgtcctcgcgccattcagtacgaagtattgggat 118127

                                
Query: 525    tgccatatggttcccaaa 542
              ||||||||||||||||||
Sbjct: 118128 tgccatatggttcccaaa 118145



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 98/116 (84%)
 Strand = Plus / Plus

                                                                          
Query: 291    ctaccatgttcctacagcacccttggacgggttctcaaaggcagcaaacccccagttggt 350
              |||||||| |||||||||||||| || ||| || ||||||||||| || |||||||  ||
Sbjct: 117797 ctaccatgatcctacagcaccctgggccggattttcaaaggcagcgaagccccagtaagt 117856

                                                                      
Query: 351    cttcagggcatacggtgggtagatggtcgatccctcggtcgtgatcttggcaatct 406
              |||||  |  || || ||||||||||||| |||||| || ||||||||||||||||
Sbjct: 117857 cttcaatgagtatggcgggtagatggtcgctccctcagttgtgatcttggcaatct 117912
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>gb|BC047415.1| Homo sapiens cancer susceptibility candidate 1, mRNA (cDNA clone
            IMAGE:5269578), partial cds
          Length = 2578

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 244  tgaaactgtttcagcagcacagtt 267
            ||||||||||||||||||||||||
Sbjct: 1182 tgaaactgtttcagcagcacagtt 1205
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>ref|NM_018272.2| Homo sapiens cancer susceptibility candidate 1 (CASC1), mRNA
          Length = 2550

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 244  tgaaactgtttcagcagcacagtt 267
            ||||||||||||||||||||||||
Sbjct: 1182 tgaaactgtttcagcagcacagtt 1205
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>gb|AY423543.1| Homo sapiens lung adenoma susceptibility 1-like protein (LAS1) mRNA,
            complete cds
          Length = 2151

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 244  tgaaactgtttcagcagcacagtt 267
            ||||||||||||||||||||||||
Sbjct: 1044 tgaaactgtttcagcagcacagtt 1067
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>gb|BC057795.1| Homo sapiens hypothetical protein FLJ10921, mRNA (cDNA clone
            IMAGE:5266518), partial cds
          Length = 2376

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 244  tgaaactgtttcagcagcacagtt 267
            ||||||||||||||||||||||||
Sbjct: 1126 tgaaactgtttcagcagcacagtt 1149
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>gb|BC028415.1| Homo sapiens cancer susceptibility candidate 1, mRNA (cDNA clone
            MGC:33578 IMAGE:4823620), complete cds
          Length = 2464

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 244  tgaaactgtttcagcagcacagtt 267
            ||||||||||||||||||||||||
Sbjct: 1277 tgaaactgtttcagcagcacagtt 1300
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>gb|BC031047.1| Homo sapiens cancer susceptibility candidate 1, mRNA (cDNA clone
            IMAGE:5270474)
          Length = 2377

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 244  tgaaactgtttcagcagcacagtt 267
            ||||||||||||||||||||||||
Sbjct: 1127 tgaaactgtttcagcagcacagtt 1150
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>dbj|AK093102.1| Homo sapiens cDNA FLJ35783 fis, clone TESTI2005568, weakly similar to
            TRANSLATION INITIATION FACTOR IF-2
          Length = 2347

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 244  tgaaactgtttcagcagcacagtt 267
            ||||||||||||||||||||||||
Sbjct: 1114 tgaaactgtttcagcagcacagtt 1137
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>dbj|AK001783.1| Homo sapiens cDNA FLJ10921 fis, clone OVARC1000411
          Length = 1784

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 244 tgaaactgtttcagcagcacagtt 267
           ||||||||||||||||||||||||
Sbjct: 551 tgaaactgtttcagcagcacagtt 574
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>dbj|AB168925.1| Macaca fascicularis testis cDNA, clone: QtsA-15847, similar to human
            cancer susceptibility candidate 1 (CASC1), mRNA, RefSeq:
            NM_018272.2
          Length = 2384

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 244  tgaaactgtttcagcagcacagtt 267
            ||||||||||||||||||||||||
Sbjct: 1125 tgaaactgtttcagcagcacagtt 1148
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>ref|XM_875888.1| PREDICTED: Bos taurus similar to vesicle amine transport protein 1,
           transcript variant 3 (LOC510698), mRNA
          Length = 2365

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 473 cagcttcttcaaaagtcatgtcctca 498
           |||||||||||||||||||| |||||
Sbjct: 259 cagcttcttcaaaagtcatggcctca 234
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>ref|XM_587873.2| PREDICTED: Bos taurus similar to vesicle amine transport protein 1,
           transcript variant 1 (LOC510698), mRNA
          Length = 2654

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 473 cagcttcttcaaaagtcatgtcctca 498
           |||||||||||||||||||| |||||
Sbjct: 548 cagcttcttcaaaagtcatggcctca 523
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>gb|AF092915.1|AF092915 Nicotiana tabacum cytochrome P450-dependent fatty acid hydroxylase
           (CYP94A4) mRNA, complete cds
          Length = 1722

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 466 agcttaacagcttcttcaaaag 487
           ||||||||||||||||||||||
Sbjct: 707 agcttaacagcttcttcaaaag 686
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>gb|AY391256.1| Lessardia elongata heat shock protein 90 gene, partial cds
          Length = 1740

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 48  aaacaagtcaaagggagcacg 68
           |||||||||||||||||||||
Sbjct: 951 aaacaagtcaaagggagcacg 931
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>gb|AC121788.3| Mus musculus BAC clone RP23-395N2 from chromosome 10, complete sequence
          Length = 196144

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 2      tcttcaagagaaaaatgaaca 22
              |||||||||||||||||||||
Sbjct: 124469 tcttcaagagaaaaatgaaca 124489
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>gb|AC011711.8| Homo sapiens chromosome 11, clone RP11-309J20, complete sequence
          Length = 149542

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 478   tcttcaaaagtcatgtcctca 498
             |||||||||||||||||||||
Sbjct: 24369 tcttcaaaagtcatgtcctca 24349
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>gb|AC018375.8| Homo sapiens, clone RP11-3P24, complete sequence
          Length = 149951

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 478    tcttcaaaagtcatgtcctca 498
              |||||||||||||||||||||
Sbjct: 143111 tcttcaaaagtcatgtcctca 143091
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>gb|AF347086.1| Trechispora kavinioides isolate 260 5.8S ribosomal RNA gene,
           partial sequence; internal transcribed spacer 2,
           complete sequence; and 28S ribosomal RNA gene, partial
           sequence
          Length = 1207

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 326 caaaggcagcaaacccccag 345
           ||||||||||||||||||||
Sbjct: 165 caaaggcagcaaacccccag 146
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>gb|AC149057.7| Mus musculus BAC clone RP23-345D18 from chromosome 7, complete sequence
          Length = 189323

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 47     aaaacaagtcaaagggagca 66
              ||||||||||||||||||||
Sbjct: 114082 aaaacaagtcaaagggagca 114063
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>gb|AE017353.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 13, complete
              sequence
          Length = 787999

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 49     aacaagtcaaagggagcacg 68
              ||||||||||||||||||||
Sbjct: 444861 aacaagtcaaagggagcacg 444880
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>gb|AC100600.22| Mus musculus chromosome 9, clone RP23-157H17, complete sequence
          Length = 225538

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 194    cagagcaaatgtggagttca 213
              ||||||||||||||||||||
Sbjct: 164419 cagagcaaatgtggagttca 164400
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 449    gcaagcacttctcaatgagcttaa 472
              ||||||||| ||||||||||||||
Sbjct: 212450 gcaagcactgctcaatgagcttaa 212427
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>gb|AC135962.4| Mus musculus BAC clone RP23-342H15 from chromosome 16, complete
             sequence
          Length = 202525

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 469   ttaacagcttcttcaaaagt 488
             ||||||||||||||||||||
Sbjct: 66364 ttaacagcttcttcaaaagt 66345
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>gb|AC165962.4| Mus musculus BAC clone RP23-362B7 from chromosome 17, complete sequence
          Length = 179745

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 276   ttcctagctcatggcctacc 295
             ||||||||||||||||||||
Sbjct: 71742 ttcctagctcatggcctacc 71761
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>gb|AF384808.1| Cryptococcus neoformans var. grubii heat-shock protein 90 gene,
            partial cds
          Length = 2391

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 49   aacaagtcaaagggagcacg 68
            ||||||||||||||||||||
Sbjct: 1141 aacaagtcaaagggagcacg 1122
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>gb|AF384807.1| Cryptococcus bacillisporus heat-shock protein 90 gene, complete cds
          Length = 3957

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 49   aacaagtcaaagggagcacg 68
            ||||||||||||||||||||
Sbjct: 2093 aacaagtcaaagggagcacg 2074
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>ref|XM_568451.1| Cryptococcus neoformans var. neoformans JEC21 chaperone (CNM01520)
            partial mRNA
          Length = 2404

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 49   aacaagtcaaagggagcacg 68
            ||||||||||||||||||||
Sbjct: 1046 aacaagtcaaagggagcacg 1027
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>gb|AC140359.2| Mus musculus BAC clone RP24-240P8 from chromosome 5, complete sequence
          Length = 167021

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 127    catcatacaagacaagattt 146
              ||||||||||||||||||||
Sbjct: 152117 catcatacaagacaagattt 152098
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>gb|AC126556.4| Mus musculus BAC clone RP23-64L3 from chromosome 15, complete sequence
          Length = 179685

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 191   atacagagcaaatgtggagt 210
             ||||||||||||||||||||
Sbjct: 35510 atacagagcaaatgtggagt 35529
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>gb|AC125544.4| Mus musculus BAC clone RP23-364A24 from chromosome 17, complete
             sequence
          Length = 159298

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 276   ttcctagctcatggcctacc 295
             ||||||||||||||||||||
Sbjct: 53503 ttcctagctcatggcctacc 53484
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>gb|AC127323.3| Mus musculus BAC clone RP23-242D19 from 18, complete sequence
          Length = 208152

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 320    ggttctcaaaggcagcaaac 339
              ||||||||||||||||||||
Sbjct: 115542 ggttctcaaaggcagcaaac 115561
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>gb|AC112270.3| Mus musculus BAC clone RP24-117A22 from 5, complete sequence
          Length = 180594

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 127    catcatacaagacaagattt 146
              ||||||||||||||||||||
Sbjct: 154374 catcatacaagacaagattt 154393
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>ref|XM_793815.1| PREDICTED: Strongylocentrotus purpuratus similar to CG13567-PB,
            isoform B (LOC594372), mRNA
          Length = 1215

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 236  acgagggctgaaactgtttc 255
            ||||||||||||||||||||
Sbjct: 1174 acgagggctgaaactgtttc 1155
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>emb|AL928631.4| Mouse DNA sequence from clone RP23-240K15 on chromosome 4, complete
             sequence
          Length = 178426

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 167   tttaagtcaaattataaaca 186
             ||||||||||||||||||||
Sbjct: 17556 tttaagtcaaattataaaca 17575
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>emb|CR857815.1| Pongo pygmaeus mRNA; cDNA DKFZp459M0261 (from clone DKFZp459M0261)
          Length = 1807

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 244 tgaaactgtttcagcagcacagtt 267
           ||||| ||||||||||||||||||
Sbjct: 556 tgaaattgtttcagcagcacagtt 579
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>gb|AC002524.1| Homo sapiens x BAC GS1-257G1 (Genome Systems Human BAC Library) complete
              sequence
          Length = 202540

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 479    cttcaaaagtcatgtcctca 498
              ||||||||||||||||||||
Sbjct: 159822 cttcaaaagtcatgtcctca 159841
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>gb|AC025041.7|AC025041 Homo sapiens chromosome 15 clone RP11-316P21 map 15q21.2, complete
             sequence
          Length = 173387

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 194   cagagcaaatgtggagttca 213
             ||||||||||||||||||||
Sbjct: 83848 cagagcaaatgtggagttca 83829
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>gb|AY691910.1| Uncultured bacterium clone HZ27 unknown sequence
          Length = 8765

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 497  cacgccattcaccacgaagg 516
            ||||||||||||||||||||
Sbjct: 5616 cacgccattcaccacgaagg 5597
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>emb|BX324159.6| Zebrafish DNA sequence from clone CH211-10O1 in linkage group 21,
              complete sequence
          Length = 178610

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 187    tgtcatacagagcaaatgtg 206
              ||||||||||||||||||||
Sbjct: 109278 tgtcatacagagcaaatgtg 109297
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>gb|AC151602.4| Mus musculus BAC clone RP23-218K15 from chromosome 7, complete sequence
          Length = 249504

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 47    aaaacaagtcaaagggagca 66
             ||||||||||||||||||||
Sbjct: 35764 aaaacaagtcaaagggagca 35745
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>emb|BX088719.6| Zebrafish DNA sequence from clone CH211-207H2 in linkage group 17,
              complete sequence
          Length = 205685

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 479    cttcaaaagtcatgtcctca 498
              ||||||||||||||||||||
Sbjct: 188006 cttcaaaagtcatgtcctca 187987


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,747,240
Number of Sequences: 3902068
Number of extensions: 4747240
Number of successful extensions: 95679
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95586
Number of HSP's gapped (non-prelim): 86
length of query: 543
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 520
effective length of database: 17,143,297,704
effective search space: 8914514806080
effective search space used: 8914514806080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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