ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart31e03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_475176.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1011 Score = 234 bits (118), Expect = 2e-58 Identities = 226/262 (86%) Strand = Plus / Minus Query: 245 gccgacgatgagcgagacgagcgcgtccttgaagtggccgtgcgcgctgccggcgacggc 304 |||| ||| |||||||| ||||||||| || ||| ||||||||| | ||||||||||| Sbjct: 1002 gccggcgacgagcgagaggagcgcgtctctgtagtagccgtgcgccttcccggcgacggc 943 Query: 305 gtcctcgagcttggccccgaactgctcctggtaggccgccctgatgccgtccatgtccac 364 |||||| ||| | | ||||||||||| ||||||||||| | |||| ||||||||||||| Sbjct: 942 gtcctccagcctcccgccgaactgctcgtggtaggccgcgcggatggcgtccatgtccac 883 Query: 365 gtccgaccgcgtcaccgccacccgcgacagggcctccttgccgtggtggtccgcgccctc 424 ||||| |||||||||||||||||||| ||| |||||||| |||||||||| ||||| || Sbjct: 882 gtccgcccgcgtcaccgccacccgcgtcagcgcctccttcgcgtggtggtcggcgccgtc 823 Query: 425 cctcagcgccgccgccatcacctggctgaagtacctctccggcgtcgccaggcactgcac 484 |||| ||||||||||| ||||| ||||||||||||| ||||||||||||||||| || | Sbjct: 822 gctcaccgccgccgccaccacctcgctgaagtacctcgccggcgtcgccaggcacagcgc 763 Query: 485 ggcctccctcagagcctcctcg 506 ||||||||||| | ||||||| Sbjct: 762 cgcctccctcagtgtctcctcg 741
>gb|AC136222.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0088M05, complete sequence Length = 153368 Score = 234 bits (118), Expect = 2e-58 Identities = 226/262 (86%) Strand = Plus / Plus Query: 245 gccgacgatgagcgagacgagcgcgtccttgaagtggccgtgcgcgctgccggcgacggc 304 |||| ||| |||||||| ||||||||| || ||| ||||||||| | ||||||||||| Sbjct: 143519 gccggcgacgagcgagaggagcgcgtctctgtagtagccgtgcgccttcccggcgacggc 143578 Query: 305 gtcctcgagcttggccccgaactgctcctggtaggccgccctgatgccgtccatgtccac 364 |||||| ||| | | ||||||||||| ||||||||||| | |||| ||||||||||||| Sbjct: 143579 gtcctccagcctcccgccgaactgctcgtggtaggccgcgcggatggcgtccatgtccac 143638 Query: 365 gtccgaccgcgtcaccgccacccgcgacagggcctccttgccgtggtggtccgcgccctc 424 ||||| |||||||||||||||||||| ||| |||||||| |||||||||| ||||| || Sbjct: 143639 gtccgcccgcgtcaccgccacccgcgtcagcgcctccttcgcgtggtggtcggcgccgtc 143698 Query: 425 cctcagcgccgccgccatcacctggctgaagtacctctccggcgtcgccaggcactgcac 484 |||| ||||||||||| ||||| ||||||||||||| ||||||||||||||||| || | Sbjct: 143699 gctcaccgccgccgccaccacctcgctgaagtacctcgccggcgtcgccaggcacagcgc 143758 Query: 485 ggcctccctcagagcctcctcg 506 ||||||||||| | ||||||| Sbjct: 143759 cgcctccctcagtgtctcctcg 143780
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 234 bits (118), Expect = 2e-58 Identities = 226/262 (86%) Strand = Plus / Plus Query: 245 gccgacgatgagcgagacgagcgcgtccttgaagtggccgtgcgcgctgccggcgacggc 304 |||| ||| |||||||| ||||||||| || ||| ||||||||| | ||||||||||| Sbjct: 18350307 gccggcgacgagcgagaggagcgcgtctctgtagtagccgtgcgccttcccggcgacggc 18350366 Query: 305 gtcctcgagcttggccccgaactgctcctggtaggccgccctgatgccgtccatgtccac 364 |||||| ||| | | ||||||||||| ||||||||||| | |||| ||||||||||||| Sbjct: 18350367 gtcctccagcctcccgccgaactgctcgtggtaggccgcgcggatggcgtccatgtccac 18350426 Query: 365 gtccgaccgcgtcaccgccacccgcgacagggcctccttgccgtggtggtccgcgccctc 424 ||||| |||||||||||||||||||| ||| |||||||| |||||||||| ||||| || Sbjct: 18350427 gtccgcccgcgtcaccgccacccgcgtcagcgcctccttcgcgtggtggtcggcgccgtc 18350486 Query: 425 cctcagcgccgccgccatcacctggctgaagtacctctccggcgtcgccaggcactgcac 484 |||| ||||||||||| ||||| ||||||||||||| ||||||||||||||||| || | Sbjct: 18350487 gctcaccgccgccgccaccacctcgctgaagtacctcgccggcgtcgccaggcacagcgc 18350546 Query: 485 ggcctccctcagagcctcctcg 506 ||||||||||| | ||||||| Sbjct: 18350547 cgcctccctcagtgtctcctcg 18350568 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 gagaagacgaagacgaaccc 221 |||||||||||||||||||| Sbjct: 26915273 gagaagacgaagacgaaccc 26915254
>dbj|AK104639.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-E05, full insert sequence Length = 1254 Score = 234 bits (118), Expect = 2e-58 Identities = 226/262 (86%) Strand = Plus / Minus Query: 245 gccgacgatgagcgagacgagcgcgtccttgaagtggccgtgcgcgctgccggcgacggc 304 |||| ||| |||||||| ||||||||| || ||| ||||||||| | ||||||||||| Sbjct: 1058 gccggcgacgagcgagaggagcgcgtctctgtagtagccgtgcgccttcccggcgacggc 999 Query: 305 gtcctcgagcttggccccgaactgctcctggtaggccgccctgatgccgtccatgtccac 364 |||||| ||| | | ||||||||||| ||||||||||| | |||| ||||||||||||| Sbjct: 998 gtcctccagcctcccgccgaactgctcgtggtaggccgcgcggatggcgtccatgtccac 939 Query: 365 gtccgaccgcgtcaccgccacccgcgacagggcctccttgccgtggtggtccgcgccctc 424 ||||| |||||||||||||||||||| ||| |||||||| |||||||||| ||||| || Sbjct: 938 gtccgcccgcgtcaccgccacccgcgtcagcgcctccttcgcgtggtggtcggcgccgtc 879 Query: 425 cctcagcgccgccgccatcacctggctgaagtacctctccggcgtcgccaggcactgcac 484 |||| ||||||||||| ||||| ||||||||||||| ||||||||||||||||| || | Sbjct: 878 gctcaccgccgccgccaccacctcgctgaagtacctcgccggcgtcgccaggcacagcgc 819 Query: 485 ggcctccctcagagcctcctcg 506 ||||||||||| | ||||||| Sbjct: 818 cgcctccctcagtgtctcctcg 797
>dbj|AK098879.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001F11, full insert sequence Length = 1254 Score = 234 bits (118), Expect = 2e-58 Identities = 226/262 (86%) Strand = Plus / Minus Query: 245 gccgacgatgagcgagacgagcgcgtccttgaagtggccgtgcgcgctgccggcgacggc 304 |||| ||| |||||||| ||||||||| || ||| ||||||||| | ||||||||||| Sbjct: 1059 gccggcgacgagcgagaggagcgcgtctctgtagtagccgtgcgccttcccggcgacggc 1000 Query: 305 gtcctcgagcttggccccgaactgctcctggtaggccgccctgatgccgtccatgtccac 364 |||||| ||| | | ||||||||||| ||||||||||| | |||| ||||||||||||| Sbjct: 999 gtcctccagcctcccgccgaactgctcgtggtaggccgcgcggatggcgtccatgtccac 940 Query: 365 gtccgaccgcgtcaccgccacccgcgacagggcctccttgccgtggtggtccgcgccctc 424 ||||| |||||||||||||||||||| ||| |||||||| |||||||||| ||||| || Sbjct: 939 gtccgcccgcgtcaccgccacccgcgtcagcgcctccttcgcgtggtggtcggcgccgtc 880 Query: 425 cctcagcgccgccgccatcacctggctgaagtacctctccggcgtcgccaggcactgcac 484 |||| ||||||||||| ||||| ||||||||||||| ||||||||||||||||| || | Sbjct: 879 gctcaccgccgccgccaccacctcgctgaagtacctcgccggcgtcgccaggcacagcgc 820 Query: 485 ggcctccctcagagcctcctcg 506 ||||||||||| | ||||||| Sbjct: 819 cgcctccctcagtgtctcctcg 798
>dbj|AK060054.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-B07, full insert sequence Length = 1284 Score = 234 bits (118), Expect = 2e-58 Identities = 226/262 (86%) Strand = Plus / Minus Query: 245 gccgacgatgagcgagacgagcgcgtccttgaagtggccgtgcgcgctgccggcgacggc 304 |||| ||| |||||||| ||||||||| || ||| ||||||||| | ||||||||||| Sbjct: 1058 gccggcgacgagcgagaggagcgcgtctctgtagtagccgtgcgccttcccggcgacggc 999 Query: 305 gtcctcgagcttggccccgaactgctcctggtaggccgccctgatgccgtccatgtccac 364 |||||| ||| | | ||||||||||| ||||||||||| | |||| ||||||||||||| Sbjct: 998 gtcctccagcctcccgccgaactgctcgtggtaggccgcgcggatggcgtccatgtccac 939 Query: 365 gtccgaccgcgtcaccgccacccgcgacagggcctccttgccgtggtggtccgcgccctc 424 ||||| |||||||||||||||||||| ||| |||||||| |||||||||| ||||| || Sbjct: 938 gtccgcccgcgtcaccgccacccgcgtcagcgcctccttcgcgtggtggtcggcgccgtc 879 Query: 425 cctcagcgccgccgccatcacctggctgaagtacctctccggcgtcgccaggcactgcac 484 |||| ||||||||||| ||||| ||||||||||||| ||||||||||||||||| || | Sbjct: 878 gctcaccgccgccgccaccacctcgctgaagtacctcgccggcgtcgccaggcacagcgc 819 Query: 485 ggcctccctcagagcctcctcg 506 ||||||||||| | ||||||| Sbjct: 818 cgcctccctcagtgtctcctcg 797
>gb|AY107653.1| Zea mays PCO119349 mRNA sequence Length = 587 Score = 165 bits (83), Expect = 2e-37 Identities = 167/195 (85%) Strand = Plus / Plus Query: 264 agcgcgtccttgaagtggccgtgcgcgctgccggcgacggcgtcctcgagcttggccccg 323 ||||||||| || |||| |||||||| || | |||| | ||||||| |||||||||||| Sbjct: 267 agcgcgtccctgtagtgtccgtgcgccttggccgcgatgacgtcctccagcttggccccg 326 Query: 324 aactgctcctggtaggccgccctgatgccgtccatgtccacgtccgaccgcgtcaccgcc 383 ||||||| |||||||| || |||||| |||||||||| ||||||||||||||||||| Sbjct: 327 aactgctggtggtaggcggctctgatgtcgtccatgtcgtggtccgaccgcgtcaccgcc 386 Query: 384 acccgcgacagggcctccttgccgtggtggtccgcgccctccctcagcgccgccgccatc 443 |||| || |||||||||||| ||||||||||| |||| ||||||||||| || | ||| Sbjct: 387 accctcgtcagggcctccttcccgtggtggtcggcgctgtccctcagcgcgccctcaatc 446 Query: 444 acctggctgaagtac 458 ||||||||||||||| Sbjct: 447 acctggctgaagtac 461
>dbj|AK068231.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013147O19, full insert sequence Length = 472 Score = 67.9 bits (34), Expect = 3e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 449 gctgaagtacctctccggcgtcgccaggcactgcacggcctccctcagagcctcctcg 506 ||||||||||||| ||||||||||||||||| || | ||||||||||| | ||||||| Sbjct: 299 gctgaagtacctcgccggcgtcgccaggcacagcgccgcctccctcagtgtctcctcg 242
>dbj|AB190187.1| Arthrobacter globiformis cmmA, cmmB genes for 6-alpha-maltosyltransferase, hypothetical protein, complete and partial cds Length = 4467 Score = 48.1 bits (24), Expect = 0.029 Identities = 24/24 (100%) Strand = Plus / Minus Query: 267 gcgtccttgaagtggccgtgcgcg 290 |||||||||||||||||||||||| Sbjct: 3512 gcgtccttgaagtggccgtgcgcg 3489
>ref|XM_418230.1| PREDICTED: Gallus gallus similar to hypothetical gene MGC19595 (LOC420112), mRNA Length = 2262 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 479 ctgcacggcctccctcagagcctcctc 505 ||||||||||||||||| ||||||||| Sbjct: 462 ctgcacggcctccctcacagcctcctc 436
>emb|CR354313.1| Gallus gallus finished cDNA, clone ChEST70d4 Length = 2304 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 479 ctgcacggcctccctcagagcctcctc 505 ||||||||||||||||| ||||||||| Sbjct: 462 ctgcacggcctccctcacagcctcctc 436
>emb|BX931681.1| Gallus gallus finished cDNA, clone ChEST545h18 Length = 873 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 479 ctgcacggcctccctcagagcctcctc 505 ||||||||||||||||| ||||||||| Sbjct: 208 ctgcacggcctccctcacagcctcctc 182
>emb|AL606470.15| Mouse DNA sequence from clone RP23-293J11 on chromosome 11 Contains a Friedreich ataxia protein (Frda) pseudogene, complete sequence Length = 203970 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 65 cctcagctgcaaatgttacatt 86 |||||||||||||||||||||| Sbjct: 122286 cctcagctgcaaatgttacatt 122307
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Minus Query: 367 ccgaccgcgtcaccgccacccgcgac 392 |||||||||||||| ||||||||||| Sbjct: 651605 ccgaccgcgtcacccccacccgcgac 651580
>gb|AC079052.4| Homo sapiens chromosome 18, clone RP11-142I20, complete sequence Length = 164220 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Minus Query: 4 ggaagacaaagatccaaatgtttaat 29 ||||||||||| |||||||||||||| Sbjct: 67934 ggaagacaaagttccaaatgtttaat 67909
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 427 tcagcgccgccgccatcacctg 448 |||||||||||||||||||||| Sbjct: 1478414 tcagcgccgccgccatcacctg 1478435
>emb|AL606748.9| Human DNA sequence from clone RP13-43E11 on chromosome Xp21.1-21.3 Contains the 5' end of the SRPX gene for a chromosome X sushi-repeat-containing protein, a novel gene, the RPGR gene for retinitis pigmentosa GTPase regulator, the 5' end of the OTC gene for ornithine carbamoyltransferase and two CpG islands, complete sequence Length = 141577 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 16 tccaaatgtttaattttattt 36 ||||||||||||||||||||| Sbjct: 77775 tccaaatgtttaattttattt 77795
>emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete genome; segment 2/29 Length = 291000 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 367 ccgaccgcgtcaccgccaccc 387 ||||||||||||||||||||| Sbjct: 126036 ccgaccgcgtcaccgccaccc 126016
>emb|AJ318463.1|HSA318463 Homo sapiens RPGR gene for retinitis pigmentosa GTPase regulator, exons 1-19 Length = 77581 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 16 tccaaatgtttaattttattt 36 ||||||||||||||||||||| Sbjct: 43800 tccaaatgtttaattttattt 43780
>gb|AC104042.5| Homo sapiens chromosome 11, clone CTD-2119L1, complete sequence Length = 109477 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 19 aaatgtttaattttatttgat 39 ||||||||||||||||||||| Sbjct: 53579 aaatgtttaattttatttgat 53559
>dbj|AK076574.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4921518K07 product:unclassifiable, full insert sequence Length = 4711 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 141 atgaagcaggaaaaaagaaaa 161 ||||||||||||||||||||| Sbjct: 4656 atgaagcaggaaaaaagaaaa 4676
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 390 gacagggcctccttgccgtgg 410 ||||||||||||||||||||| Sbjct: 5905844 gacagggcctccttgccgtgg 5905824 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 199 gacgagaagacgaagacgaa 218 |||||||||||||||||||| Sbjct: 22959886 gacgagaagacgaagacgaa 22959867
>gb|AC010873.12| Homo sapiens BAC clone RP11-112N16 from 2, complete sequence Length = 180602 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 2 atggaagacaaagatccaaatgttt 26 ||||||||||||||||||| ||||| Sbjct: 175372 atggaagacaaagatccaagtgttt 175396
>dbj|AP003748.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1136_A05 Length = 120823 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 390 gacagggcctccttgccgtgg 410 ||||||||||||||||||||| Sbjct: 48292 gacagggcctccttgccgtgg 48272
>dbj|AP003837.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1559_F09 Length = 87792 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 390 gacagggcctccttgccgtgg 410 ||||||||||||||||||||| Sbjct: 80518 gacagggcctccttgccgtgg 80498
>gb|AC153592.3| Mus musculus 6 BAC RP23-20C15 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 195726 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 141 atgaagcaggaaaaaagaaaa 161 ||||||||||||||||||||| Sbjct: 157931 atgaagcaggaaaaaagaaaa 157911
>ref|XM_629929.1| Dictyostelium discoideum hypothetical protein (DDB0184067), partial mRNA Length = 3351 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 aatgtttaattttatttgat 39 |||||||||||||||||||| Sbjct: 482 aatgtttaattttatttgat 501
>ref|XM_475829.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 633 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 gagaagacgaagacgaaccc 221 |||||||||||||||||||| Sbjct: 25 gagaagacgaagacgaaccc 6
>gb|AC102143.10| Mus musculus chromosome 7, clone RP23-292M1, complete sequence Length = 169980 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 137 ctagatgaagcaggaaaaaagaaa 160 ||||||||||||| |||||||||| Sbjct: 139438 ctagatgaagcagaaaaaaagaaa 139415
>gb|AC123071.3| Mus musculus BAC clone RP23-70P8 from chromosome 13, complete sequence Length = 252384 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 aagcaggaaaaaagaaaaca 163 |||||||||||||||||||| Sbjct: 96445 aagcaggaaaaaagaaaaca 96426
>ref|XM_322490.1| Neurospora crassa OR74A hypothetical protein (NCU00405.1) partial mRNA Length = 1992 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 cgacggcgtcctcgagcttg 317 |||||||||||||||||||| Sbjct: 472 cgacggcgtcctcgagcttg 453
>ref|XM_952198.1| Neurospora crassa OR74A hypothetical protein (NCU00405.1) partial mRNA Length = 1992 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 cgacggcgtcctcgagcttg 317 |||||||||||||||||||| Sbjct: 472 cgacggcgtcctcgagcttg 453
>gb|AC104278.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1345_B12, complete sequence Length = 119909 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 gagaagacgaagacgaaccc 221 |||||||||||||||||||| Sbjct: 67705 gagaagacgaagacgaaccc 67686
>gb|AC148477.3| Homo sapiens 12 BAC RP13-895J2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 160802 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 485 ggcctccctcagagcctcct 504 |||||||||||||||||||| Sbjct: 122776 ggcctccctcagagcctcct 122757
>gb|AC163625.5| Mus musculus BAC clone RP23-135K11 from chromosome 8, complete sequence Length = 228750 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 agcaggaaaaaagaaaacac 164 |||||||||||||||||||| Sbjct: 89700 agcaggaaaaaagaaaacac 89681
>gb|AF545435.1| Homo sapiens thymine-DNA glycosylase (TDG) gene, complete cds Length = 25621 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 aagcaggaaaaaagaaaaca 163 |||||||||||||||||||| Sbjct: 20788 aagcaggaaaaaagaaaaca 20807
>ref|XM_777705.1| PREDICTED: Strongylocentrotus purpuratus similar to Akt-phosphorylation enhancer (LOC577479), mRNA Length = 5469 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 487 cctccctcagagcctcctcg 506 |||||||||||||||||||| Sbjct: 334 cctccctcagagcctcctcg 315
>gb|AC158584.9| Mus musculus chromosome 7, clone RP24-157G13, complete sequence Length = 183369 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 421 cctccctcagcgccgccgcc 440 |||||||||||||||||||| Sbjct: 75442 cctccctcagcgccgccgcc 75461
>gb|AC118658.4| Homo sapiens chromosome 15, clone RP11-35O15, complete sequence Length = 168727 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 421 cctccctcagcgccgccgcc 440 |||||||||||||||||||| Sbjct: 151859 cctccctcagcgccgccgcc 151840
>emb|AL606522.6| Mouse DNA sequence from clone RP23-19L22 on chromosome 11 Contains the Actr2 gene for ARP2 actin-related protein 2 homolog (yeast), a small nuclear ribonucleoprotein polypeptide G (Snrpg) pseudogene, two novel genes, the Rab1 gene for RAB1, member RAS oncogene family and three CpG islands, complete sequence Length = 203071 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 aagcaggaaaaaagaaaaca 163 |||||||||||||||||||| Sbjct: 196883 aagcaggaaaaaagaaaaca 196902
>gb|AC101986.10| Mus musculus chromosome 7, clone RP24-353K18, complete sequence Length = 187803 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 421 cctccctcagcgccgccgcc 440 |||||||||||||||||||| Sbjct: 104431 cctccctcagcgccgccgcc 104450
>gb|AC118660.5| Homo sapiens chromosome 15, clone RP11-631H11, complete sequence Length = 167851 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 421 cctccctcagcgccgccgcc 440 |||||||||||||||||||| Sbjct: 108412 cctccctcagcgccgccgcc 108393
>gb|AC021070.24| Homo sapiens 12 BAC RP11-460N10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 162978 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 aatggaagacaaagatccaa 20 |||||||||||||||||||| Sbjct: 82870 aatggaagacaaagatccaa 82851
>gb|S78307.1| insulin-like growth factor I receptor {promoter} [rats, Genomic, 1358 nt] Length = 1358 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 421 cctccctcagcgccgccgcc 440 |||||||||||||||||||| Sbjct: 824 cctccctcagcgccgccgcc 805
>gb|M37807.1|RATIGFIRC Rat insulin-like growth factor I (IGFI) receptor gene, 5' end Length = 1358 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 421 cctccctcagcgccgccgcc 440 |||||||||||||||||||| Sbjct: 824 cctccctcagcgccgccgcc 805
>gb|AY394844.4| Pseudomonas sp. M18 pyoluteorin biosynthetic and ABC transporter gene cluster, partial sequence Length = 32800 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 304 cgtcctcgagcttggccccgaactgctc 331 |||||||||||||||||| || |||||| Sbjct: 16538 cgtcctcgagcttggcccggacctgctc 16511
>emb|BX931431.2| Gallus gallus finished cDNA, clone ChEST649i14 Length = 1397 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 424 ccctcagcgccgccgccatc 443 |||||||||||||||||||| Sbjct: 37 ccctcagcgccgccgccatc 18
>gb|AC021200.7| Homo sapiens BAC clone RP11-62B4 from 4, complete sequence Length = 154690 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 gatccaaatgtttaatttta 33 |||||||||||||||||||| Sbjct: 4173 gatccaaatgtttaatttta 4154
>gb|AC113618.5| Homo sapiens BAC clone RP11-1367O10 from 2, complete sequence Length = 199917 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 gacaaagatccaaatgttta 27 |||||||||||||||||||| Sbjct: 123106 gacaaagatccaaatgttta 123087
>gb|AC020594.6| Homo sapiens BAC clone RP11-322P19 from 2, complete sequence Length = 193410 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 ccaaatgtttaattttattt 36 |||||||||||||||||||| Sbjct: 55016 ccaaatgtttaattttattt 55035
>gb|AC114763.6| Homo sapiens BAC clone RP11-369K2 from 2, complete sequence Length = 87248 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 140 gatgaagcaggaaaaaagaaaaca 163 ||||||||||||||||| |||||| Sbjct: 21861 gatgaagcaggaaaaaacaaaaca 21838
>gb|AC078819.24| Homo sapiens 12q BAC RP11-490H24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 172319 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 aagcaggaaaaaagaaaaca 163 |||||||||||||||||||| Sbjct: 61808 aagcaggaaaaaagaaaaca 61827
>ref|XM_343442.2| PREDICTED: Rattus norvegicus phosphoglucomutase 3 (predicted) (Pgm3_predicted), mRNA Length = 2711 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 aagcaggaaaaaagaaaaca 163 |||||||||||||||||||| Sbjct: 2467 aagcaggaaaaaagaaaaca 2486
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 428 cagcgccgccgccatcacct 447 |||||||||||||||||||| Sbjct: 4960782 cagcgccgccgccatcacct 4960801
>dbj|AP005908.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1121_A05 Length = 172668 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 199 gacgagaagacgaagacgaa 218 |||||||||||||||||||| Sbjct: 35100 gacgagaagacgaagacgaa 35081
>dbj|BS000219.2| Pan troglodytes chromosome 22 clone:RP43-010L20, map 22, complete sequences Length = 62227 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 aagcaggaaaaaagaaaaca 163 |||||||||||||||||||| Sbjct: 42524 aagcaggaaaaaagaaaaca 42543
>dbj|AP002748.4| Homo sapiens genomic DNA, chromosome 11 clone:CTD-3074O7, complete sequence Length = 176017 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 471 gccaggcactgcacggcctc 490 |||||||||||||||||||| Sbjct: 60843 gccaggcactgcacggcctc 60824
>emb|Y10575.1|HSY10575 H.sapiens TDG gene, exon 6 & 7 Length = 1169 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 aagcaggaaaaaagaaaaca 163 |||||||||||||||||||| Sbjct: 583 aagcaggaaaaaagaaaaca 602
>dbj|AP001700.1| Homo sapiens genomic DNA, chromosome 21q, section 44/105 Length = 340000 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 aagcaggaaaaaagaaaaca 163 |||||||||||||||||||| Sbjct: 7985 aagcaggaaaaaagaaaaca 8004
>gb|AC151054.2| Mus musculus BAC clone RP23-147K16 from 13, complete sequence Length = 220038 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 aagcaggaaaaaagaaaaca 163 |||||||||||||||||||| Sbjct: 213737 aagcaggaaaaaagaaaaca 213756
>gb|M69229.1|HUMIGFR1PR Human insulin-like growth factor I receptor gene, promoter region and 5' end Length = 1651 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 421 cctccctcagcgccgccgcc 440 |||||||||||||||||||| Sbjct: 985 cctccctcagcgccgccgcc 966
>emb|AL049875.2|CNS0000O Human chromosome 14 DNA sequence BAC R-111A21 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 163118 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 caaatgtttaattttatttg 37 |||||||||||||||||||| Sbjct: 119829 caaatgtttaattttatttg 119848
>dbj|AP001607.1| Homo sapiens genomic DNA, chromosome 21, clone:KB851D4, APP-D21S292 region, complete sequence Length = 137676 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 aagcaggaaaaaagaaaaca 163 |||||||||||||||||||| Sbjct: 41305 aagcaggaaaaaagaaaaca 41324 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,290,873 Number of Sequences: 3902068 Number of extensions: 5290873 Number of successful extensions: 123657 Number of sequences better than 10.0: 63 Number of HSP's better than 10.0 without gapping: 65 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 122781 Number of HSP's gapped (non-prelim): 876 length of query: 517 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 494 effective length of database: 17,143,297,704 effective search space: 8468789065776 effective search space used: 8468789065776 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
