ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart31e02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.13
2dbj|AP005424.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.13
3dbj|AK098903.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.13
4dbj|AK061837.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.13
5gb|BC051918.1| Mus musculus RAB3B, member RAS oncogene family, m... 42 0.52
6ref|NM_023537.4| Mus musculus RAB3B, member RAS oncogene family ... 42 0.52
7dbj|AK012165.1| Mus musculus 10 days embryo whole body cDNA, RIK... 42 0.52
8dbj|AK082959.1| Mus musculus 12 days embryo spinal cord cDNA, RI... 42 0.52
9gb|BC057173.1| Mus musculus RAB3B, member RAS oncogene family, m... 42 0.52
10emb|AL607070.19| Mouse DNA sequence from clone RP23-31C9 on chro... 42 0.52
11gb|AC102343.8| Mus musculus chromosome 3, clone RP23-254H18, com... 40 2.1
12gb|AC165238.5| Mus musculus chromosome 3, clone RP23-466A3, comp... 40 2.1
13gb|AC154204.2| Mus musculus BAC clone RP24-393D5 from chromosome... 38 8.1
14gb|AY466452.1| Sorghum propinquum phytochrome C (PHYC) gene, com... 38 8.1
15gb|AY466468.1| Sorghum x drummondii voucher PI199869 phytochrome... 38 8.1
16gb|AY466467.1| Sorghum arundinaceum voucher PI302233 phytochrome... 38 8.1
17gb|AY466466.1| Sorghum arundinaceum voucher PI225905 phytochrome... 38 8.1
18gb|AY466465.1| Sorghum arundinaceum voucher IS14485 phytochrome ... 38 8.1
19gb|AY466464.1| Sorghum arundinaceum voucher PI302105 phytochrome... 38 8.1
20gb|AY466463.1| Sorghum arundinaceum voucher IS14567 phytochrome ... 38 8.1
21gb|AY466462.1| Sorghum arundinaceum voucher IS14503 phytochrome ... 38 8.1
22gb|AY466461.1| Sorghum arundinaceum voucher PI213900 phytochrome... 38 8.1
23gb|AY466460.1| Sorghum arundinaceum voucher IS14569 phytochrome ... 38 8.1
24gb|AY466459.1| Sorghum bicolor phytochrome C (PHYC) gene, comple... 38 8.1
25gb|AY466458.1| Sorghum bicolor phytochrome C (PHYC) gene, comple... 38 8.1
26gb|AY466457.1| Sorghum bicolor voucher NSL83707 phytochrome C (P... 38 8.1
27gb|AY466456.1| Sorghum bicolor voucher PI152593 phytochrome C (P... 38 8.1
28gb|AY466455.1| Sorghum bicolor voucher PI229835 phytochrome C (P... 38 8.1
29gb|AY466454.1| Sorghum bicolor voucher PI153800 phytochrome C (P... 38 8.1
30gb|AY466453.1| Sorghum bicolor voucher PI267380 phytochrome C (P... 38 8.1
31gb|AC120558.12| Mus musculus chromosome 18, clone RP24-494K12, c... 38 8.1
32gb|AC105142.4| Homo sapiens chromosome 8, clone CTD-3240I20, com... 38 8.1
33emb|AL590995.14| Human DNA sequence from clone RP11-475B22 on ch... 38 8.1
34emb|AL355332.8| Human DNA sequence from clone RP11-390F23 on chr... 38 8.1
35gb|AC107877.4| Homo sapiens chromosome 8, clone RP11-74P9, compl... 38 8.1
36gb|AC098475.2| Homo sapiens chromosome 3 clone RP11-611H7, compl... 38 8.1
37gb|AC079874.21| Oryza sativa chromosome 10 BAC OSJNBa0042H09 gen... 38 8.1
38gb|AC103558.2| Homo sapiens chromosome 3 clone RP11-46B13, compl... 38 8.1
39gb|AC091647.4| Homo sapiens chromosome 18, clone RP11-635D8, com... 38 8.1
40dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.1
41dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.1
42gb|AC019239.5|AC019239 Homo sapiens chromosome 18, clone RP11-34... 38 8.1
43dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.1
44gb|AC154745.3| Mus musculus BAC clone RP24-395F6 from chromosome... 38 8.1
45gb|CP000084.1| Candidatus Pelagibacter ubique HTCC1062, complete... 38 8.1
46dbj|AP005475.4| Oryza sativa (japonica cultivar-group) genomic D... 38 8.1
47dbj|AP003710.3| Oryza sativa (japonica cultivar-group) genomic D... 38 8.1
48dbj|AP005673.3| Oryza sativa (japonica cultivar-group) genomic D... 38 8.1
49emb|AL954710.27| Mouse DNA sequence from clone RP23-275J10 on ch... 38 8.1
50dbj|AP002514.5| Homo sapiens genomic DNA, chromosome 11 clone:CT... 38 8.1
51gb|AC110730.10| Mus musculus chromosome 18, clone RP23-315I21, c... 38 8.1
52dbj|AP004710.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 38 8.1
53emb|AJ001473.1|PRMTRNA11 Podarcis muralis mitochondrial gene for... 38 8.1
54emb|AJ001472.1|PRMTRNA10 Podarcis muralis mitochondrial gene for... 38 8.1
55emb|AJ001471.1|PMMTRNA9 Podarcis muralis mitochondrial gene for ... 38 8.1
56emb|AJ001470.1|PMMTRNA8 Podarcis muralis mitochondrial gene for ... 38 8.1
57emb|AJ001469.1|PMMTRNA7 Podarcis muralis mitochondrial gene for ... 38 8.1
58emb|AJ001468.1|PMMTRNA6 Podarcis muralis mitochondrial gene for ... 38 8.1
59gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 38 8.1
60gb|AE017198.1| Lactobacillus johnsonii NCC 533, complete genome 38 8.1
61gb|AC133158.2| Mus musculus BAC clone RP24-491F15 from 8, comple... 38 8.1
62gb|AC142262.3| Mus musculus BAC clone RP24-486I4 from 8, complet... 38 8.1
63emb|CT025551.9| Mouse DNA sequence from clone RP23-414I10 on chr... 38 8.1
64emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB1... 38 8.1
65emb|AL671090.9| Mouse DNA sequence from clone RP23-154A10 on chr... 38 8.1
66emb|AL731771.8| Mouse DNA sequence from clone RP23-111L20 on chr... 38 8.1 
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                              
Query: 104      gactaaatatcaaaattcctagttcccatg 133
                ||||||||||||||||||||| ||| ||||
Sbjct: 16182119 gactaaatatcaaaattcctatttcacatg 16182148
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>dbj|AP005424.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0556H01
          Length = 149800

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 104   gactaaatatcaaaattcctagttcccatg 133
             ||||||||||||||||||||| ||| ||||
Sbjct: 86720 gactaaatatcaaaattcctatttcacatg 86749
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>dbj|AK098903.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002C22, full
           insert sequence
          Length = 1016

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 104 gactaaatatcaaaattcctagttcccatg 133
           ||||||||||||||||||||| ||| ||||
Sbjct: 905 gactaaatatcaaaattcctatttcacatg 876
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>dbj|AK061837.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-D10, full
           insert sequence
          Length = 1008

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 104 gactaaatatcaaaattcctagttcccatg 133
           ||||||||||||||||||||| ||| ||||
Sbjct: 924 gactaaatatcaaaattcctatttcacatg 895
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>gb|BC051918.1| Mus musculus RAB3B, member RAS oncogene family, mRNA (cDNA clone
           MGC:62156 IMAGE:5691723), complete cds
          Length = 1109

 Score = 42.1 bits (21), Expect = 0.52
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 61  attccccaatcccaagcaaga 81
           |||||||||||||||||||||
Sbjct: 783 attccccaatcccaagcaaga 803
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>ref|NM_023537.4| Mus musculus RAB3B, member RAS oncogene family (Rab3b), mRNA
          Length = 3320

 Score = 42.1 bits (21), Expect = 0.52
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 61  attccccaatcccaagcaaga 81
           |||||||||||||||||||||
Sbjct: 878 attccccaatcccaagcaaga 898
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>dbj|AK012165.1| Mus musculus 10 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:2610528C18 product:RAB3B, member
           RAS oncogene family, full insert sequence
          Length = 1046

 Score = 42.1 bits (21), Expect = 0.52
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 61  attccccaatcccaagcaaga 81
           |||||||||||||||||||||
Sbjct: 838 attccccaatcccaagcaaga 858
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>dbj|AK082959.1| Mus musculus 12 days embryo spinal cord cDNA, RIKEN full-length
           enriched library, clone:C530023P17 product:RAB3B, member
           RAS oncogene family, full insert sequence
          Length = 3320

 Score = 42.1 bits (21), Expect = 0.52
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 61  attccccaatcccaagcaaga 81
           |||||||||||||||||||||
Sbjct: 878 attccccaatcccaagcaaga 898
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>gb|BC057173.1| Mus musculus RAB3B, member RAS oncogene family, mRNA (cDNA clone
           MGC:67925 IMAGE:4989309), complete cds
          Length = 1074

 Score = 42.1 bits (21), Expect = 0.52
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 61  attccccaatcccaagcaaga 81
           |||||||||||||||||||||
Sbjct: 747 attccccaatcccaagcaaga 767
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>emb|AL607070.19| Mouse DNA sequence from clone RP23-31C9 on chromosome 4, complete
              sequence
          Length = 215106

 Score = 42.1 bits (21), Expect = 0.52
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 61     attccccaatcccaagcaaga 81
              |||||||||||||||||||||
Sbjct: 197924 attccccaatcccaagcaaga 197944
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>gb|AC102343.8| Mus musculus chromosome 3, clone RP23-254H18, complete sequence
          Length = 220876

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 8      ttattaaaactatcaggcaa 27
              ||||||||||||||||||||
Sbjct: 127341 ttattaaaactatcaggcaa 127360
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>gb|AC165238.5| Mus musculus chromosome 3, clone RP23-466A3, complete sequence
          Length = 180939

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 8      ttattaaaactatcaggcaa 27
              ||||||||||||||||||||
Sbjct: 178768 ttattaaaactatcaggcaa 178749
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>gb|AC154204.2| Mus musculus BAC clone RP24-393D5 from chromosome 17, complete
            sequence
          Length = 183408

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 10   attaaaactatcaggcaac 28
            |||||||||||||||||||
Sbjct: 8002 attaaaactatcaggcaac 8020
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>gb|AY466452.1| Sorghum propinquum phytochrome C (PHYC) gene, complete cds
          Length = 4424

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 52   caattcccaattccccaat 70
            |||||||||||||||||||
Sbjct: 3183 caattcccaattccccaat 3201
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>gb|AY466468.1| Sorghum x drummondii voucher PI199869 phytochrome C (PHYC) gene,
            complete cds
          Length = 4422

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 52   caattcccaattccccaat 70
            |||||||||||||||||||
Sbjct: 3183 caattcccaattccccaat 3201
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>gb|AY466467.1| Sorghum arundinaceum voucher PI302233 phytochrome C (PHYC) gene,
            complete cds
          Length = 4424

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 52   caattcccaattccccaat 70
            |||||||||||||||||||
Sbjct: 3180 caattcccaattccccaat 3198
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>gb|AY466466.1| Sorghum arundinaceum voucher PI225905 phytochrome C (PHYC) gene,
            complete cds
          Length = 4427

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 52   caattcccaattccccaat 70
            |||||||||||||||||||
Sbjct: 3183 caattcccaattccccaat 3201
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>gb|AY466465.1| Sorghum arundinaceum voucher IS14485 phytochrome C (PHYC) gene,
            complete cds
          Length = 4422

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 52   caattcccaattccccaat 70
            |||||||||||||||||||
Sbjct: 3183 caattcccaattccccaat 3201
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>gb|AY466464.1| Sorghum arundinaceum voucher PI302105 phytochrome C (PHYC) gene,
            complete cds
          Length = 4422

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 52   caattcccaattccccaat 70
            |||||||||||||||||||
Sbjct: 3183 caattcccaattccccaat 3201
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>gb|AY466463.1| Sorghum arundinaceum voucher IS14567 phytochrome C (PHYC) gene,
            complete cds
          Length = 4422

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 52   caattcccaattccccaat 70
            |||||||||||||||||||
Sbjct: 3183 caattcccaattccccaat 3201
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>gb|AY466462.1| Sorghum arundinaceum voucher IS14503 phytochrome C (PHYC) gene,
            complete cds
          Length = 4427

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 52   caattcccaattccccaat 70
            |||||||||||||||||||
Sbjct: 3183 caattcccaattccccaat 3201
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>gb|AY466461.1| Sorghum arundinaceum voucher PI213900 phytochrome C (PHYC) gene,
            complete cds
          Length = 4427

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 52   caattcccaattccccaat 70
            |||||||||||||||||||
Sbjct: 3183 caattcccaattccccaat 3201
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>gb|AY466460.1| Sorghum arundinaceum voucher IS14569 phytochrome C (PHYC) gene,
            complete cds
          Length = 4427

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 52   caattcccaattccccaat 70
            |||||||||||||||||||
Sbjct: 3183 caattcccaattccccaat 3201
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>gb|AY466459.1| Sorghum bicolor phytochrome C (PHYC) gene, complete cds
          Length = 4422

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 52   caattcccaattccccaat 70
            |||||||||||||||||||
Sbjct: 3183 caattcccaattccccaat 3201
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>gb|AY466458.1| Sorghum bicolor phytochrome C (PHYC) gene, complete cds
          Length = 4422

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 52   caattcccaattccccaat 70
            |||||||||||||||||||
Sbjct: 3183 caattcccaattccccaat 3201
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>gb|AY466457.1| Sorghum bicolor voucher NSL83707 phytochrome C (PHYC) gene, complete
            cds
          Length = 4422

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 52   caattcccaattccccaat 70
            |||||||||||||||||||
Sbjct: 3183 caattcccaattccccaat 3201
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>gb|AY466456.1| Sorghum bicolor voucher PI152593 phytochrome C (PHYC) gene, complete
            cds
          Length = 4422

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 52   caattcccaattccccaat 70
            |||||||||||||||||||
Sbjct: 3183 caattcccaattccccaat 3201
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>gb|AY466455.1| Sorghum bicolor voucher PI229835 phytochrome C (PHYC) gene, complete
            cds
          Length = 4422

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 52   caattcccaattccccaat 70
            |||||||||||||||||||
Sbjct: 3183 caattcccaattccccaat 3201
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>gb|AY466454.1| Sorghum bicolor voucher PI153800 phytochrome C (PHYC) gene, complete
            cds
          Length = 4422

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 52   caattcccaattccccaat 70
            |||||||||||||||||||
Sbjct: 3183 caattcccaattccccaat 3201
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>gb|AY466453.1| Sorghum bicolor voucher PI267380 phytochrome C (PHYC) gene, complete
            cds
          Length = 4422

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 52   caattcccaattccccaat 70
            |||||||||||||||||||
Sbjct: 3183 caattcccaattccccaat 3201
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>gb|AC120558.12| Mus musculus chromosome 18, clone RP24-494K12, complete sequence
          Length = 216435

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 140   gcaggacaagcttatgatgacag 162
             |||||||||||| ||||||||||
Sbjct: 58839 gcaggacaagctaatgatgacag 58861
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>gb|AC105142.4| Homo sapiens chromosome 8, clone CTD-3240I20, complete sequence
          Length = 112106

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 101   ctggactaaatatcaaaattcctagtt 127
             ||||||||||||||||||  |||||||
Sbjct: 96700 ctggactaaatatcaaaacacctagtt 96674
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>emb|AL590995.14| Human DNA sequence from clone RP11-475B22 on chromosome 6, complete
            sequence
          Length = 113362

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 106  ctaaatatcaaaattccta 124
            |||||||||||||||||||
Sbjct: 8858 ctaaatatcaaaattccta 8840
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>emb|AL355332.8| Human DNA sequence from clone RP11-390F23 on chromosome 10 Contains a CpG
              island, complete sequence
          Length = 182997

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 52     caattcccaattccccaat 70
              |||||||||||||||||||
Sbjct: 164306 caattcccaattccccaat 164288
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>gb|AC107877.4| Homo sapiens chromosome 8, clone RP11-74P9, complete sequence
          Length = 181925

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                         
Query: 101    ctggactaaatatcaaaattcctagtt 127
              ||||||||||||||||||  |||||||
Sbjct: 178877 ctggactaaatatcaaaacacctagtt 178903
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>gb|AC098475.2| Homo sapiens chromosome 3 clone RP11-611H7, complete sequence
          Length = 152945

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 62    ttccccaatcccaagcaag 80
             |||||||||||||||||||
Sbjct: 64757 ttccccaatcccaagcaag 64739
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>gb|AC079874.21| Oryza sativa chromosome 10 BAC OSJNBa0042H09 genomic sequence, complete
              sequence
          Length = 144191

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 54     attcccaattccccaatcc 72
              |||||||||||||||||||
Sbjct: 113428 attcccaattccccaatcc 113410
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>gb|AC103558.2| Homo sapiens chromosome 3 clone RP11-46B13, complete sequence
          Length = 174539

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 62     ttccccaatcccaagcaag 80
              |||||||||||||||||||
Sbjct: 155068 ttccccaatcccaagcaag 155050
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>gb|AC091647.4| Homo sapiens chromosome 18, clone RP11-635D8, complete sequence
          Length = 173368

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 8      ttattaaaactatcaggca 26
              |||||||||||||||||||
Sbjct: 123383 ttattaaaactatcaggca 123401
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 54       attcccaattccccaatcc 72
                |||||||||||||||||||
Sbjct: 21496629 attcccaattccccaatcc 21496647
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 54       attcccaattccccaatcc 72
                |||||||||||||||||||
Sbjct: 10302908 attcccaattccccaatcc 10302890
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>gb|AC019239.5|AC019239 Homo sapiens chromosome 18, clone RP11-346H17, complete sequence
          Length = 165591

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 8     ttattaaaactatcaggca 26
             |||||||||||||||||||
Sbjct: 93956 ttattaaaactatcaggca 93974
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                           
Query: 71       cccaagcaagagcaataaccaaacaag 97
                ||||||| ||||||| |||||||||||
Sbjct: 26335067 cccaagctagagcaacaaccaaacaag 26335093
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>gb|AC154745.3| Mus musculus BAC clone RP24-395F6 from chromosome 13, complete sequence
          Length = 144172

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 115   aaaattcctagttcccatgagca 137
             ||||||||| |||||||||||||
Sbjct: 83778 aaaattcctggttcccatgagca 83756
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>gb|CP000084.1| Candidatus Pelagibacter ubique HTCC1062, complete genome
          Length = 1308759

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 101    ctggactaaatatcaaaattcct 123
              ||||||||||||||| |||||||
Sbjct: 273833 ctggactaaatatcagaattcct 273855
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>dbj|AP005475.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0091L05
          Length = 173983

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 54    attcccaattccccaatcc 72
             |||||||||||||||||||
Sbjct: 14088 attcccaattccccaatcc 14070
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>dbj|AP003710.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:OSJNBb0032K15
          Length = 126195

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                       
Query: 71   cccaagcaagagcaataaccaaacaag 97
            ||||||| ||||||| |||||||||||
Sbjct: 8932 cccaagctagagcaacaaccaaacaag 8958
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>dbj|AP005673.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:B1029H08
          Length = 137050

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 54     attcccaattccccaatcc 72
              |||||||||||||||||||
Sbjct: 124827 attcccaattccccaatcc 124809
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>emb|AL954710.27| Mouse DNA sequence from clone RP23-275J10 on chromosome 4, complete
             sequence
          Length = 202551

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 128   cccatgagcagggcaggac 146
             |||||||||||||||||||
Sbjct: 97042 cccatgagcagggcaggac 97060
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>dbj|AP002514.5| Homo sapiens genomic DNA, chromosome 11 clone:CTD-3055E19, complete
              sequence
          Length = 201641

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 77     caagagcaataaccaaaca 95
              |||||||||||||||||||
Sbjct: 104012 caagagcaataaccaaaca 104030
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>gb|AC110730.10| Mus musculus chromosome 18, clone RP23-315I21, complete sequence
          Length = 223107

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 140   gcaggacaagcttatgatgacag 162
             |||||||||||| ||||||||||
Sbjct: 61706 gcaggacaagctaatgatgacag 61684
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>dbj|AP004710.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1429D6, complete
             sequence
          Length = 179115

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 101   ctggactaaatatcaaaattcctagtt 127
             ||||||||||||||||||  |||||||
Sbjct: 52257 ctggactaaatatcaaaacacctagtt 52283
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>emb|AJ001473.1|PRMTRNA11 Podarcis muralis mitochondrial gene for 12S ribosomal RNA
          Length = 547

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 108 aaatatcaaaattcctagt 126
           |||||||||||||||||||
Sbjct: 317 aaatatcaaaattcctagt 335
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>emb|AJ001472.1|PRMTRNA10 Podarcis muralis mitochondrial gene for 12S ribosomal RNA
          Length = 547

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 108 aaatatcaaaattcctagt 126
           |||||||||||||||||||
Sbjct: 317 aaatatcaaaattcctagt 335
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>emb|AJ001471.1|PMMTRNA9 Podarcis muralis mitochondrial gene for 12S ribosomal RNA
          Length = 544

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 108 aaatatcaaaattcctagt 126
           |||||||||||||||||||
Sbjct: 314 aaatatcaaaattcctagt 332
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>emb|AJ001470.1|PMMTRNA8 Podarcis muralis mitochondrial gene for 12S ribosomal RNA
          Length = 544

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 108 aaatatcaaaattcctagt 126
           |||||||||||||||||||
Sbjct: 314 aaatatcaaaattcctagt 332
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>emb|AJ001469.1|PMMTRNA7 Podarcis muralis mitochondrial gene for 12S ribosomal RNA
          Length = 544

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 108 aaatatcaaaattcctagt 126
           |||||||||||||||||||
Sbjct: 314 aaatatcaaaattcctagt 332
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>emb|AJ001468.1|PMMTRNA6 Podarcis muralis mitochondrial gene for 12S ribosomal RNA
          Length = 544

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 108 aaatatcaaaattcctagt 126
           |||||||||||||||||||
Sbjct: 314 aaatatcaaaattcctagt 332
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 54       attcccaattccccaatcc 72
                |||||||||||||||||||
Sbjct: 21508292 attcccaattccccaatcc 21508310
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>gb|AE017198.1| Lactobacillus johnsonii NCC 533, complete genome
          Length = 1992676

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 101     ctggactaaatatcaaaat 119
               |||||||||||||||||||
Sbjct: 1147611 ctggactaaatatcaaaat 1147629
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>gb|AC133158.2| Mus musculus BAC clone RP24-491F15 from 8, complete sequence
          Length = 172481

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 87    aaccaaacaagggtctgga 105
             |||||||||||||||||||
Sbjct: 87409 aaccaaacaagggtctgga 87391
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>gb|AC142262.3| Mus musculus BAC clone RP24-486I4 from 8, complete sequence
          Length = 204183

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 87     aaccaaacaagggtctgga 105
              |||||||||||||||||||
Sbjct: 188614 aaccaaacaagggtctgga 188632
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>emb|CT025551.9| Mouse DNA sequence from clone RP23-414I10 on chromosome 13, complete
             sequence
          Length = 196737

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 115   aaaattcctagttcccatgagca 137
             ||||||||| |||||||||||||
Sbjct: 93627 aaaattcctggttcccatgagca 93605
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>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica
          Length = 3633272

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 57      cccaattccccaatcccaa 75
               |||||||||||||||||||
Sbjct: 1176336 cccaattccccaatcccaa 1176318
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>emb|AL671090.9| Mouse DNA sequence from clone RP23-154A10 on chromosome 4, complete
              sequence
          Length = 197665

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 139    ggcaggacaagcttatgat 157
              |||||||||||||||||||
Sbjct: 106346 ggcaggacaagcttatgat 106328
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>emb|AL731771.8| Mouse DNA sequence from clone RP23-111L20 on chromosome X, complete
             sequence
          Length = 211183

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 6     tcttattaaaactatcagg 24
             |||||||||||||||||||
Sbjct: 55841 tcttattaaaactatcagg 55823


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,679,325
Number of Sequences: 3902068
Number of extensions: 1679325
Number of successful extensions: 128646
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 128274
Number of HSP's gapped (non-prelim): 372
length of query: 167
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 145
effective length of database: 17,147,199,772
effective search space: 2486343966940
effective search space used: 2486343966940
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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