ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart31e01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC092076.7| Oryza sativa chromosome 3 BAC OSJNBb0021G19 genomic sequence, complete sequence Length = 141582 Score = 222 bits (112), Expect = 8e-55 Identities = 238/280 (85%) Strand = Plus / Minus Query: 187 ggcggccggtggaggaattcgatgcactgctcgccaggccgctggtcggggcgtccggcg 246 ||||| ||||| ||||| ||||||||| |||||| | |||||||||||||| |||||| Sbjct: 99376 ggcgggcggtgcaggaacgcgatgcactcctcgccggagcgctggtcggggcggccggcg 99317 Query: 247 atgcagttctgccggtcgtcgatgtggggcacctccaggcaccggtgcggctcgccgcag 306 ||||||||||| |||||||| | ||| |||||||| ||||| |||||||||||||||||| Sbjct: 99316 atgcagttctggcggtcgtcaacgtgcggcacctcgaggcagcggtgcggctcgccgcag 99257 Query: 307 aagaagttgtgggagtaggtgaagttcttgaggttgggcagcgcgcagatgctctcgggg 366 |||||||||||||||||||||||||||||||||| || || ||||||||| || ||| Sbjct: 99256 aagaagttgtgggagtaggtgaagttcttgaggtgcgggagggcgcagatggagtccggg 99197 Query: 367 atctcgccggcaagcatgttgttggcgacattgagctgctcgagggcgcgcatgttgccg 426 ||||||||||| || ||||| ||||| ||||||||||| || || ||||||| |||| Sbjct: 99196 atctcgccggcgaggccgttgtgcgcgacgttgagctgctccagcgcccgcatgtggccg 99137 Query: 427 atggtgtcgggcagcttgccgacgatgccgttggagctga 466 ||||| || |||||| |||| ||| | ||||| |||||| Sbjct: 99136 atggtctccggcagcgcgccggcgaagtcgttgaagctga 99097
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 222 bits (112), Expect = 8e-55 Identities = 238/280 (85%) Strand = Plus / Plus Query: 187 ggcggccggtggaggaattcgatgcactgctcgccaggccgctggtcggggcgtccggcg 246 ||||| ||||| ||||| ||||||||| |||||| | |||||||||||||| |||||| Sbjct: 32780165 ggcgggcggtgcaggaacgcgatgcactcctcgccggagcgctggtcggggcggccggcg 32780224 Query: 247 atgcagttctgccggtcgtcgatgtggggcacctccaggcaccggtgcggctcgccgcag 306 ||||||||||| |||||||| | ||| |||||||| ||||| |||||||||||||||||| Sbjct: 32780225 atgcagttctggcggtcgtcaacgtgcggcacctcgaggcagcggtgcggctcgccgcag 32780284 Query: 307 aagaagttgtgggagtaggtgaagttcttgaggttgggcagcgcgcagatgctctcgggg 366 |||||||||||||||||||||||||||||||||| || || ||||||||| || ||| Sbjct: 32780285 aagaagttgtgggagtaggtgaagttcttgaggtgcgggagggcgcagatggagtccggg 32780344 Query: 367 atctcgccggcaagcatgttgttggcgacattgagctgctcgagggcgcgcatgttgccg 426 ||||||||||| || ||||| ||||| ||||||||||| || || ||||||| |||| Sbjct: 32780345 atctcgccggcgaggccgttgtgcgcgacgttgagctgctccagcgcccgcatgtggccg 32780404 Query: 427 atggtgtcgggcagcttgccgacgatgccgttggagctga 466 ||||| || |||||| |||| ||| | ||||| |||||| Sbjct: 32780405 atggtctccggcagcgcgccggcgaagtcgttgaagctga 32780444
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 222 bits (112), Expect = 8e-55 Identities = 238/280 (85%) Strand = Plus / Plus Query: 187 ggcggccggtggaggaattcgatgcactgctcgccaggccgctggtcggggcgtccggcg 246 ||||| ||||| ||||| ||||||||| |||||| | |||||||||||||| |||||| Sbjct: 32870675 ggcgggcggtgcaggaacgcgatgcactcctcgccggagcgctggtcggggcggccggcg 32870734 Query: 247 atgcagttctgccggtcgtcgatgtggggcacctccaggcaccggtgcggctcgccgcag 306 ||||||||||| |||||||| | ||| |||||||| ||||| |||||||||||||||||| Sbjct: 32870735 atgcagttctggcggtcgtcaacgtgcggcacctcgaggcagcggtgcggctcgccgcag 32870794 Query: 307 aagaagttgtgggagtaggtgaagttcttgaggttgggcagcgcgcagatgctctcgggg 366 |||||||||||||||||||||||||||||||||| || || ||||||||| || ||| Sbjct: 32870795 aagaagttgtgggagtaggtgaagttcttgaggtgcgggagggcgcagatggagtccggg 32870854 Query: 367 atctcgccggcaagcatgttgttggcgacattgagctgctcgagggcgcgcatgttgccg 426 ||||||||||| || ||||| ||||| ||||||||||| || || ||||||| |||| Sbjct: 32870855 atctcgccggcgaggccgttgtgcgcgacgttgagctgctccagcgcccgcatgtggccg 32870914 Query: 427 atggtgtcgggcagcttgccgacgatgccgttggagctga 466 ||||| || |||||| |||| ||| | ||||| |||||| Sbjct: 32870915 atggtctccggcagcgcgccggcgaagtcgttgaagctga 32870954
>dbj|AK064239.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-A10, full insert sequence Length = 1408 Score = 222 bits (112), Expect = 8e-55 Identities = 238/280 (85%) Strand = Plus / Minus Query: 187 ggcggccggtggaggaattcgatgcactgctcgccaggccgctggtcggggcgtccggcg 246 ||||| ||||| ||||| ||||||||| |||||| | |||||||||||||| |||||| Sbjct: 1197 ggcgggcggtgcaggaacgcgatgcactcctcgccggagcgctggtcggggcggccggcg 1138 Query: 247 atgcagttctgccggtcgtcgatgtggggcacctccaggcaccggtgcggctcgccgcag 306 ||||||||||| |||||||| | ||| |||||||| ||||| |||||||||||||||||| Sbjct: 1137 atgcagttctggcggtcgtcaacgtgcggcacctcgaggcagcggtgcggctcgccgcag 1078 Query: 307 aagaagttgtgggagtaggtgaagttcttgaggttgggcagcgcgcagatgctctcgggg 366 |||||||||||||||||||||||||||||||||| || || ||||||||| || ||| Sbjct: 1077 aagaagttgtgggagtaggtgaagttcttgaggtgcgggagggcgcagatggagtccggg 1018 Query: 367 atctcgccggcaagcatgttgttggcgacattgagctgctcgagggcgcgcatgttgccg 426 ||||||||||| || ||||| ||||| ||||||||||| || || ||||||| |||| Sbjct: 1017 atctcgccggcgaggccgttgtgcgcgacgttgagctgctccagcgcccgcatgtggccg 958 Query: 427 atggtgtcgggcagcttgccgacgatgccgttggagctga 466 ||||| || |||||| |||| ||| | ||||| |||||| Sbjct: 957 atggtctccggcagcgcgccggcgaagtcgttgaagctga 918
>gb|AY106034.1| Zea mays PCO099903 mRNA sequence Length = 687 Score = 151 bits (76), Expect = 2e-33 Identities = 175/208 (84%) Strand = Plus / Minus Query: 259 cggtcgtcgatgtggggcacctccaggcaccggtgcggctcgccgcagaagaagttgtgg 318 |||||||||| | | |||||||| || |||||||||||||||||||||||||||||| Sbjct: 684 cggtcgtcgacgcgcggcacctcgagcgaccggtgcggctcgccgcagaagaagttgtac 625 Query: 319 gagtaggtgaagttcttgaggttgggcagcgcgcagatgctctcggggatctcgccggca 378 |||||||||||||||||||||| ||||| |||||| |||||| || ||||||||||| Sbjct: 624 gagtaggtgaagttcttgaggtgcggcaggccgcagacgctctccggtatctcgccggcg 565 Query: 379 agcatgttgttggcgacattgagctgctcgagggcgcgcatgttgccgatggtgtcgggc 438 || ||||| ||||| | ||||||||| || || |||||||||||||| ||||| ||| Sbjct: 564 aggcggttgtgcgcgacgtcgagctgctccagcgcccgcatgttgccgatcgtgtccggc 505 Query: 439 agcttgccgacgatgccgttggagctga 466 || ||||| |||||| |||| |||||| Sbjct: 504 agggtgccggcgatgctgttgaagctga 477
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 93.7 bits (47), Expect = 5e-16 Identities = 155/191 (81%) Strand = Plus / Plus Query: 187 ggcggccggtggaggaattcgatgcactgctcgccaggccgctggtcggggcgtccggcg 246 ||||| ||||||||||| ||| |||||| ||| | || ||||||||||| | |||||| Sbjct: 4061878 ggcgggcggtggaggaaggcgaggcactggtcggccgggcgctggtcgggcctcccggcg 4061937 Query: 247 atgcagttctgccggtcgtcgatgtggggcacctccaggcaccggtgcggctcgccgcag 306 ||||||||||| |||||||||| | || | | |||||||| | ||||||||||||| Sbjct: 4061938 atgcagttctggcggtcgtcgacgcggcggaggcggaggcaccgctccggctcgccgcag 4061997 Query: 307 aagaagttgtgggagtaggtgaagttcttgaggttgggcagcgcgcagatgctctcgggg 366 ||| |||||| ||||||||||||||| |||| |||||||||||||| | ||| ||| Sbjct: 4061998 aagtagttgtatgagtaggtgaagttcctgagccgcggcagcgcgcagatcccctccggg 4062057 Query: 367 atctcgccggc 377 || | |||||| Sbjct: 4062058 atgtggccggc 4062068
>dbj|AP004307.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0534H07 Length = 144689 Score = 93.7 bits (47), Expect = 5e-16 Identities = 155/191 (81%) Strand = Plus / Plus Query: 187 ggcggccggtggaggaattcgatgcactgctcgccaggccgctggtcggggcgtccggcg 246 ||||| ||||||||||| ||| |||||| ||| | || ||||||||||| | |||||| Sbjct: 54736 ggcgggcggtggaggaaggcgaggcactggtcggccgggcgctggtcgggcctcccggcg 54795 Query: 247 atgcagttctgccggtcgtcgatgtggggcacctccaggcaccggtgcggctcgccgcag 306 ||||||||||| |||||||||| | || | | |||||||| | ||||||||||||| Sbjct: 54796 atgcagttctggcggtcgtcgacgcggcggaggcggaggcaccgctccggctcgccgcag 54855 Query: 307 aagaagttgtgggagtaggtgaagttcttgaggttgggcagcgcgcagatgctctcgggg 366 ||| |||||| ||||||||||||||| |||| |||||||||||||| | ||| ||| Sbjct: 54856 aagtagttgtatgagtaggtgaagttcctgagccgcggcagcgcgcagatcccctccggg 54915 Query: 367 atctcgccggc 377 || | |||||| Sbjct: 54916 atgtggccggc 54926
>dbj|AK062887.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-D11, full insert sequence Length = 1302 Score = 58.0 bits (29), Expect = 3e-05 Identities = 68/81 (83%) Strand = Plus / Minus Query: 297 ctcgccgcagaagaagttgtgggagtaggtgaagttcttgaggttgggcagcgcgcagat 356 ||||||||||||| |||||| ||||||||||||||| |||| |||||||||||||| Sbjct: 1018 ctcgccgcagaagtagttgtatgagtaggtgaagttcctgagccgcggcagcgcgcagat 959 Query: 357 gctctcggggatctcgccggc 377 | ||| ||||| | |||||| Sbjct: 958 cccctccgggatgtggccggc 938
>ref|NM_192605.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1713 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 293 gcggctcgccgcagaagaagttgtgggagtaggtgaagttcttgaggt 340 ||||||||||| || |||||||| ||||||||||||||||| ||||| Sbjct: 1048 gcggctcgccggtgatgaagttgtaggagtaggtgaagttctggaggt 1001 Score = 46.1 bits (23), Expect = 0.10 Identities = 50/59 (84%) Strand = Plus / Minus Query: 210 gcactgctcgccaggccgctggtcggggcgtccggcgatgcagttctgccggtcgtcga 268 ||||||||| | |||| |||||||||||| |||| |||||||||| | || ||||||| Sbjct: 1131 gcactgctccgccggcctctggtcggggcggccggggatgcagttccggcgatcgtcga 1073
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 293 gcggctcgccgcagaagaagttgtgggagtaggtgaagttcttgaggt 340 ||||||||||| || |||||||| ||||||||||||||||| ||||| Sbjct: 23282455 gcggctcgccggtgatgaagttgtaggagtaggtgaagttctggaggt 23282408 Score = 46.1 bits (23), Expect = 0.10 Identities = 50/59 (84%) Strand = Plus / Minus Query: 210 gcactgctcgccaggccgctggtcggggcgtccggcgatgcagttctgccggtcgtcga 268 ||||||||| | |||| |||||||||||| |||| |||||||||| | || ||||||| Sbjct: 23282538 gcactgctccgccggcctctggtcggggcggccggggatgcagttccggcgatcgtcga 23282480 Score = 46.1 bits (23), Expect = 0.10 Identities = 41/47 (87%) Strand = Plus / Plus Query: 293 gcggctcgccgcagaagaagttgtgggagtaggtgaagttcttgagg 339 ||||||||||| ||||||||||| | | ||||||||||||||||| Sbjct: 4179330 gcggctcgccggtgaagaagttgtacgcgaaggtgaagttcttgagg 4179376
>dbj|AP003333.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1103C09 Length = 163996 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 293 gcggctcgccgcagaagaagttgtgggagtaggtgaagttcttgaggt 340 ||||||||||| || |||||||| ||||||||||||||||| ||||| Sbjct: 8153 gcggctcgccggtgatgaagttgtaggagtaggtgaagttctggaggt 8106 Score = 46.1 bits (23), Expect = 0.10 Identities = 50/59 (84%) Strand = Plus / Minus Query: 210 gcactgctcgccaggccgctggtcggggcgtccggcgatgcagttctgccggtcgtcga 268 ||||||||| | |||| |||||||||||| |||| |||||||||| | || ||||||| Sbjct: 8236 gcactgctccgccggcctctggtcggggcggccggggatgcagttccggcgatcgtcga 8178
>dbj|AP003253.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0451D05 Length = 148381 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 293 gcggctcgccgcagaagaagttgtgggagtaggtgaagttcttgaggt 340 ||||||||||| || |||||||| ||||||||||||||||| ||||| Sbjct: 69197 gcggctcgccggtgatgaagttgtaggagtaggtgaagttctggaggt 69150 Score = 46.1 bits (23), Expect = 0.10 Identities = 50/59 (84%) Strand = Plus / Minus Query: 210 gcactgctcgccaggccgctggtcggggcgtccggcgatgcagttctgccggtcgtcga 268 ||||||||| | |||| |||||||||||| |||| |||||||||| | || ||||||| Sbjct: 69280 gcactgctccgccggcctctggtcggggcggccggggatgcagttccggcgatcgtcga 69222
>dbj|AK105670.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-A04, full insert sequence Length = 1985 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 293 gcggctcgccgcagaagaagttgtgggagtaggtgaagttcttgaggt 340 ||||||||||| || |||||||| ||||||||||||||||| ||||| Sbjct: 1107 gcggctcgccggtgatgaagttgtaggagtaggtgaagttctggaggt 1060 Score = 46.1 bits (23), Expect = 0.10 Identities = 50/59 (84%) Strand = Plus / Minus Query: 210 gcactgctcgccaggccgctggtcggggcgtccggcgatgcagttctgccggtcgtcga 268 ||||||||| | |||| |||||||||||| |||| |||||||||| | || ||||||| Sbjct: 1190 gcactgctccgccggcctctggtcggggcggccggggatgcagttccggcgatcgtcga 1132
>dbj|AK105266.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-D06, full insert sequence Length = 2042 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 293 gcggctcgccgcagaagaagttgtgggagtaggtgaagttcttgaggt 340 ||||||||||| || |||||||| ||||||||||||||||| ||||| Sbjct: 1106 gcggctcgccggtgatgaagttgtaggagtaggtgaagttctggaggt 1059 Score = 46.1 bits (23), Expect = 0.10 Identities = 50/59 (84%) Strand = Plus / Minus Query: 210 gcactgctcgccaggccgctggtcggggcgtccggcgatgcagttctgccggtcgtcga 268 ||||||||| | |||| |||||||||||| |||| |||||||||| | || ||||||| Sbjct: 1189 gcactgctccgccggcctctggtcggggcggccggggatgcagttccggcgatcgtcga 1131
>ref|XM_476068.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1245 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 293 gcggctcgccgcagaagaagttgtgggagtaggtgaagttcttgagg 339 ||||||||||| |||| |||||| |||| ||||||||||||||||| Sbjct: 988 gcggctcgccggtgaagtagttgtaggagaaggtgaagttcttgagg 942
>gb|AC130610.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0478F09, complete sequence Length = 145070 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 293 gcggctcgccgcagaagaagttgtgggagtaggtgaagttcttgagg 339 ||||||||||| |||| |||||| |||| ||||||||||||||||| Sbjct: 124528 gcggctcgccggtgaagtagttgtaggagaaggtgaagttcttgagg 124574
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 293 gcggctcgccgcagaagaagttgtgggagtaggtgaagttcttgagg 339 ||||||||||| |||| |||||| |||| ||||||||||||||||| Sbjct: 4756523 gcggctcgccggtgaagtagttgtaggagaaggtgaagttcttgagg 4756569
>gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0453H11, complete sequence Length = 187956 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 293 gcggctcgccgcagaagaagttgtgggagtaggtgaagttcttgagg 339 ||||||||||| |||| |||||| |||| ||||||||||||||||| Sbjct: 28931 gcggctcgccggtgaagtagttgtaggagaaggtgaagttcttgagg 28977
>gb|AC098647.2| Homo sapiens chromosome 3 clone RP11-130G7, complete sequence Length = 159521 Score = 48.1 bits (24), Expect = 0.026 Identities = 24/24 (100%) Strand = Plus / Plus Query: 59 gtgtgtgcatttttacccttttct 82 |||||||||||||||||||||||| Sbjct: 67673 gtgtgtgcatttttacccttttct 67696
>gb|AC099779.2| Homo sapiens chromosome 3 clone RP11-760G13, complete sequence Length = 198235 Score = 48.1 bits (24), Expect = 0.026 Identities = 24/24 (100%) Strand = Plus / Plus Query: 59 gtgtgtgcatttttacccttttct 82 |||||||||||||||||||||||| Sbjct: 144264 gtgtgtgcatttttacccttttct 144287
>ref|XM_550392.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2207 Score = 46.1 bits (23), Expect = 0.10 Identities = 41/47 (87%) Strand = Plus / Minus Query: 293 gcggctcgccgcagaagaagttgtgggagtaggtgaagttcttgagg 339 ||||||||||| ||||||||||| | | ||||||||||||||||| Sbjct: 1084 gcggctcgccggtgaagaagttgtacgcgaaggtgaagttcttgagg 1038
>dbj|AP003118.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1174_D05 Length = 128525 Score = 46.1 bits (23), Expect = 0.10 Identities = 41/47 (87%) Strand = Plus / Plus Query: 293 gcggctcgccgcagaagaagttgtgggagtaggtgaagttcttgagg 339 ||||||||||| ||||||||||| | | ||||||||||||||||| Sbjct: 17297 gcggctcgccggtgaagaagttgtacgcgaaggtgaagttcttgagg 17343
>dbj|AP002524.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0406H10 Length = 156419 Score = 46.1 bits (23), Expect = 0.10 Identities = 41/47 (87%) Strand = Plus / Plus Query: 293 gcggctcgccgcagaagaagttgtgggagtaggtgaagttcttgagg 339 ||||||||||| ||||||||||| | | ||||||||||||||||| Sbjct: 126301 gcggctcgccggtgaagaagttgtacgcgaaggtgaagttcttgagg 126347
>dbj|AK103199.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033122A11, full insert sequence Length = 2207 Score = 46.1 bits (23), Expect = 0.10 Identities = 41/47 (87%) Strand = Plus / Minus Query: 293 gcggctcgccgcagaagaagttgtgggagtaggtgaagttcttgagg 339 ||||||||||| ||||||||||| | | ||||||||||||||||| Sbjct: 1084 gcggctcgccggtgaagaagttgtacgcgaaggtgaagttcttgagg 1038
>gb|AC153623.8| Mus musculus 6 BAC RP23-459F14 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 205825 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 23 ttgtttccgaaaaataaacatt 44 |||||||||||||||||||||| Sbjct: 119861 ttgtttccgaaaaataaacatt 119840
>gb|AE009380.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 150 of 187 of the complete sequence Length = 10010 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 382 atgttgttggcgacattgagc 402 ||||||||||||||||||||| Sbjct: 8374 atgttgttggcgacattgagc 8394
>gb|AE008234.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 38 of 187 of the complete sequence Length = 13956 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 382 atgttgttggcgacattgagc 402 ||||||||||||||||||||| Sbjct: 5587 atgttgttggcgacattgagc 5567
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 374 cggcaagcatgttgttggcga 394 ||||||||||||||||||||| Sbjct: 2053437 cggcaagcatgttgttggcga 2053417
>ref|XM_753806.1| Ustilago maydis 521 hypothetical protein (UM02752.1) partial mRNA Length = 3009 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 437 gcagcttgccgacgatgccgttgga 461 |||||||||||||| |||||||||| Sbjct: 2837 gcagcttgccgacggtgccgttgga 2861
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 406 tcgagggcgcgcatgttgccgatgg 430 ||||| ||||||||||||||||||| Sbjct: 2795511 tcgagcgcgcgcatgttgccgatgg 2795535
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Minus Query: 321 gtaggtgaagttcttgaggttgggcagcgcgcagatg 357 ||||||||||||||||||| | |||||| ||||||| Sbjct: 29239579 gtaggtgaagttcttgaggctctgcagcgagcagatg 29239543
>dbj|AP003761.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0018H04 Length = 142053 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Minus Query: 321 gtaggtgaagttcttgaggttgggcagcgcgcagatg 357 ||||||||||||||||||| | |||||| ||||||| Sbjct: 2377 gtaggtgaagttcttgaggctctgcagcgagcagatg 2341
>dbj|AK105531.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-G10, full insert sequence Length = 1447 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Minus Query: 321 gtaggtgaagttcttgaggttgggcagcgcgcagatg 357 ||||||||||||||||||| | |||||| ||||||| Sbjct: 550 gtaggtgaagttcttgaggctctgcagcgagcagatg 514
>gb|AC144628.3| Mus musculus BAC clone RP23-463L22 from 14, complete sequence Length = 174162 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 14 gttatttctttgtttccgaaaaata 38 ||||||||||||||||| ||||||| Sbjct: 54178 gttatttctttgtttcctaaaaata 54154
>emb|AL808128.4| Mouse DNA sequence from clone RP23-387C21 on chromosome 2, complete sequence Length = 184736 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 47 agtatataccaagtgtgtgca 67 ||||||||||||||||||||| Sbjct: 42684 agtatataccaagtgtgtgca 42704
>dbj|AP004373.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-652L13, complete sequences Length = 96727 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 4 tcaatccattgttatttcttt 24 ||||||||||||||||||||| Sbjct: 6552 tcaatccattgttatttcttt 6532
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 416 gcatgttgccgatggtgtcgggca 439 ||||||||| |||||||||||||| Sbjct: 740830 gcatgttgctgatggtgtcgggca 740853
>gb|AC115483.2| Drosophila melanogaster clone BACR20D18, complete sequence Length = 158241 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 30 cgaaaaataaacattacagtatat 53 |||||||||||||||||| ||||| Sbjct: 139453 cgaaaaataaacattacaatatat 139476
>gb|AC163687.5| Mus musculus BAC clone RP23-3H13 from chromosome 17, complete sequence Length = 220643 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 agtaggtgaagttcttgagg 339 |||||||||||||||||||| Sbjct: 22675 agtaggtgaagttcttgagg 22656
>emb|CR956355.2| Pan troglodytes chromosome X BAC RP43-051D20, complete sequence Length = 185393 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 4 tcaatccattgttatttctttgtt 27 ||||||||| |||||||||||||| Sbjct: 74644 tcaatccatggttatttctttgtt 74667
>ref|XM_646586.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (152.t00006) partial mRNA Length = 1329 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 ccattgttatttctttgttt 28 |||||||||||||||||||| Sbjct: 343 ccattgttatttctttgttt 362
>emb|AL512592.14| Human DNA sequence from clone RP11-35D6 on chromosome 6 Contains part of a novel gene (FLJ00197), complete sequence Length = 60858 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 32 aaaaataaacattacagtatatac 55 ||||||||| |||||||||||||| Sbjct: 39287 aaaaataaaaattacagtatatac 39310
>emb|Z49271.2|RHDVGNS RHDV-AST89 p254 gene, ORF2 DNA and VP60 gene, genomic RNA Length = 7437 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 ggctcgccgcagaagaagtt 314 |||||||||||||||||||| Sbjct: 3788 ggctcgccgcagaagaagtt 3769
>emb|Z29514.1|RHDVCGS RHDV-SD complete genome Length = 7437 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 ggctcgccgcagaagaagtt 314 |||||||||||||||||||| Sbjct: 3788 ggctcgccgcagaagaagtt 3769
>ref|XM_776886.1| PREDICTED: Strongylocentrotus purpuratus similar to Lon protease homolog, mitochondrial precursor (Lon protease-like protein) (LONP) (LONHs) (LOC576598), mRNA Length = 2241 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 acagctacaaattccagtat 121 |||||||||||||||||||| Sbjct: 914 acagctacaaattccagtat 895
>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome Length = 5205140 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 421 ttgccgatggtgtcgggcagcttgccga 448 |||||||||||||||| | ||||||||| Sbjct: 1911265 ttgccgatggtgtcggactgcttgccga 1911292
>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome Length = 3665893 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 cgcggcacactgtgcaggcg 190 |||||||||||||||||||| Sbjct: 1202900 cgcggcacactgtgcaggcg 1202881
>emb|AL939119.1|SCO939119 Streptomyces coelicolor A3(2) complete genome; segment 16/29 Length = 299050 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 425 cgatggtgtcgggcagcttg 444 |||||||||||||||||||| Sbjct: 124256 cgatggtgtcgggcagcttg 124275
>emb|CR354539.13| Zebrafish DNA sequence from clone CH211-250O1 in linkage group 13, complete sequence Length = 145294 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 aataaacattacagtatata 54 |||||||||||||||||||| Sbjct: 115300 aataaacattacagtatata 115281
>gb|AC105021.6| Homo sapiens chromosome 17, clone CTD-2033D24, complete sequence Length = 143552 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 96 cagcaaacagctacaaattccagt 119 |||||||||||||||||| ||||| Sbjct: 98610 cagcaaacagctacaaataccagt 98587
>gb|AF210249.1|AF210249 Streptomyces verticillus bleomycin biosynthetic gene cluster, complete cds Length = 77457 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 223 ggccgctggtcggggcgtccggcg 246 |||||| ||||||||||||||||| Sbjct: 58430 ggccgccggtcggggcgtccggcg 58407
>gb|AC104115.3| Homo sapiens chromosome 5 clone RP11-252I14, complete sequence Length = 115793 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 178 cactgtgcaggcggccggtggagg 201 ||||||||||||| |||||||||| Sbjct: 56115 cactgtgcaggcgaccggtggagg 56092
>gb|AC009837.13| Homo sapiens chromosome 17, clone RP11-550K23, complete sequence Length = 168509 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 96 cagcaaacagctacaaattccagt 119 |||||||||||||||||| ||||| Sbjct: 1522 cagcaaacagctacaaataccagt 1499
>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome Length = 5277274 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 421 ttgccgatggtgtcgggcagcttgccga 448 |||||||||||||||| | ||||||||| Sbjct: 1893087 ttgccgatggtgtcggactgcttgccga 1893114
>gb|AC154288.2| Mus musculus BAC clone RP23-447G10 from 17, complete sequence Length = 195195 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 agtaggtgaagttcttgagg 339 |||||||||||||||||||| Sbjct: 101933 agtaggtgaagttcttgagg 101914
>gb|AF128273.1|AF128273 Streptomyces griseus putative deoxyhexose reductase (grsB), TDP-glucose synthase homolog (grsD), and TDP-glucose-4,6-dehydratase homolog (grsE) genes, complete cds Length = 4062 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 gctggtcggggcgtccggcg 246 |||||||||||||||||||| Sbjct: 834 gctggtcggggcgtccggcg 815
>gb|AE003640.4| Drosophila melanogaster chromosome 2L, section 49 of 83 of the complete sequence Length = 271118 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 30 cgaaaaataaacattacagtatat 53 |||||||||||||||||| ||||| Sbjct: 195750 cgaaaaataaacattacaatatat 195727
>emb|CT009575.8| Mouse DNA sequence from clone RP23-107N17 on chromosome 17, complete sequence Length = 226188 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 agtaggtgaagttcttgagg 339 |||||||||||||||||||| Sbjct: 78450 agtaggtgaagttcttgagg 78469
>dbj|AP004957.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT34H20, TM0134, complete sequence Length = 132605 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 aagcatgttgttggcgacat 397 |||||||||||||||||||| Sbjct: 26776 aagcatgttgttggcgacat 26757
>emb|AL928574.7| Mouse DNA sequence from clone RP23-332L19 on chromosome 4, complete sequence Length = 114436 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 aatccattgttatttctttg 25 |||||||||||||||||||| Sbjct: 15428 aatccattgttatttctttg 15447 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,690,023 Number of Sequences: 3902068 Number of extensions: 3690023 Number of successful extensions: 81361 Number of sequences better than 10.0: 60 Number of HSP's better than 10.0 without gapping: 61 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 80750 Number of HSP's gapped (non-prelim): 608 length of query: 466 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 444 effective length of database: 17,147,199,772 effective search space: 7613356698768 effective search space used: 7613356698768 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
