>POL_HTLV2 (P03363) Pol polyprotein [Contains: Reverse|
            transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
            (RT); Integrase (IN)]
          Length = 982

 Score = 32.3 bits (72), Expect = 0.67
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 357  PWQDLQPIVGSILIPIDGAKSWLPESLRKKKEAP 256
            P Q LQ   G+ L+ IDG+  W+P    KK   P
Sbjct: 930  PLQSLQEAAGAALLSIDGSPRWIPWRFLKKAACP 963

>TTDN1_HUMAN (Q8TAP9) TTD nonphotosensitive 1 protein|
          Length = 179

 Score = 32.0 bits (71), Expect = 0.88
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -2

Query: 402 SQDQRNYYRKSMVDDPWQDLQPI 334
           S +  NY++ SM++DPW  L+P+
Sbjct: 133 SNELENYFKPSMLEDPWAGLEPV 155

>CCNF_MOUSE (P51944) G2/mitotic-specific cyclin-F|
          Length = 776

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +3

Query: 369 WTSCSSSSDLA-IQNGCGSHPFPLFLLALGCCSSSRPCH 482
           ++S SSSS ++ +  G G  P    +L++G  SS++PCH
Sbjct: 696 YSSVSSSSPISSLDGGMGGSPQSTSVLSVGSHSSTKPCH 734

>TTDN1_MOUSE (Q9D011) TTD nonphotosensitive 1 protein homolog|
          Length = 178

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -2

Query: 402 SQDQRNYYRKSMVDDPWQDLQPI 334
           S +  +Y++ SM++DPW  L+P+
Sbjct: 132 SNELESYFKPSMLEDPWAGLEPV 154

>CENPF_HUMAN (P49454) CENP-F kinetochore protein (Centromere protein F) (Mitosin)|
            (AH antigen)
          Length = 3210

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
 Frame = +2

Query: 14   LCI*SERSSLTYRRNKLKG--DEYMLRTTAILMVQKFMLKGSPDT---KNSCHVSLDSLE 178
            +C+  E S +T  RN+L+G  D    +TTA+  + + M + + +    ++ C   +   E
Sbjct: 2043 VCLEEELSVVTSERNQLRGELDTMSKKTTALDQLSEKMKEKTQELESHQSECLHCIQVAE 2102

Query: 179  ASLKDKSRYSAGLNPDV 229
            A +K+K+     L+ DV
Sbjct: 2103 AEVKEKTELLQTLSSDV 2119

>TCF8_MOUSE (Q64318) Transcription factor 8 (Zinc finger homeobox protein 1a)|
           (MEB1) (Delta EF1)
          Length = 1117

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -2

Query: 351 QDLQPIVGSILIPIDGAKSWLPESLRKKKEAPNQGRTIPNPTSG 220
           ++L  I  S+ +P+DG K W  +   +  + P Q    P+P +G
Sbjct: 587 EELSKIADSVNLPLDGVKKWFEK--MQAGQIPGQSPDPPSPGTG 628

>LAML1_CAEEL (Q18823) Laminin-like protein C54D1.5 precursor|
          Length = 1535

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = -2

Query: 402  SQDQRNYYRKSMVDDPWQDLQPIVGSILIPIDGAKSWLPESLRKKKEAPNQGRTIP 235
            S +   YY+K   DD     + +   +L  I  +K  LP SLRK K   +    IP
Sbjct: 1477 SNENLQYYKKQAEDDKQMATEAVRKQLLPRILPSKQMLPFSLRKMKSRKSSILWIP 1532

>AKAP6_RAT (Q9WVC7) A-kinase anchor protein 6 (Protein kinase A-anchoring|
            protein 6) (PRKA6) (mAKAP)
          Length = 2314

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +2

Query: 122  LKGSPDTKNSCHVSLDSLEASLKDKSRYSAGLNPDV--GFGIVRPWLGASFFLRNDSGSQ 295
            LK SP    +   ++ +   S KD S  S    PD+  G G+VRP+   S  L  +SGS+
Sbjct: 1303 LKSSPKFTGTTQPTVLTKSLS-KDSSFSSTKSLPDLLGGSGLVRPYSCHSGDLSQNSGSE 1361

Query: 296  DLAPSMGISMLPT 334
                S G + +PT
Sbjct: 1362 SGIVSEGDNEMPT 1374

>LUM_RABIT (O46379) Lumican (Keratan sulfate proteoglycan lumican) (KSPG|
           lumican) (Fragment)
          Length = 192

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 17/35 (48%), Positives = 19/35 (54%)
 Frame = -2

Query: 222 GLSPAEYLDLSFNEASNESNET*HEFLVSGLPFSM 118
           GL   EYLDLSFN+ S          L SGLP S+
Sbjct: 91  GLKSLEYLDLSFNQMSK---------LPSGLPASL 116

>GS17_XENLA (P07733) Gastrula-specific protein 17|
          Length = 147

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 417 HNHSGSQDQRNYYRKSMVDDPWQDLQ 340
           H     +D  +YY  SM++DPW  LQ
Sbjct: 116 HQPGSYRDISHYYSPSMLEDPWAALQ 141


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,020,371
Number of Sequences: 219361
Number of extensions: 1266767
Number of successful extensions: 3793
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3793
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)