Clone Name | rbart31d12 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_465925.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1312 Score = 83.8 bits (42), Expect = 5e-13 Identities = 54/58 (93%) Strand = Plus / Minus Query: 170 tcattagaagcctcgttgaaagacaagtcaaggtattctgccggactcaatcctgatg 227 ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct: 1067 tcattagaagcctcgttgaaagacaagtcaaggtactctgccaagctcaatcctgatg 1010 Score = 75.8 bits (38), Expect = 1e-10 Identities = 71/82 (86%) Strand = Plus / Minus Query: 263 tccttctttttacgcaatgactctggaagccaggacttggcgccatcaatgggtatcagt 322 ||||||||| ||||| ||| ||||||||||||||||||| ||||| ||||||||| | Sbjct: 980 tccttctttgcacgcagtgattctggaagccaggacttggatccatccctgggtatcatt 921 Query: 323 atgctgccaacgataggttgca 344 ||| ||||||| |||||||||| Sbjct: 920 atgttgccaacaataggttgca 899 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 420 agccaccccttccccctcttcctcttggccctgggctgttgtagtagttctcgcccct 477 ||||| |||||||||||||||| |||| |||||| ||||||||| ||| | |||||| Sbjct: 817 agccatcccttccccctcttccccttgatcctgggttgttgtagttgttttggcccct 760
>ref|XM_506814.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0052M16.39 mRNA Length = 1362 Score = 83.8 bits (42), Expect = 5e-13 Identities = 54/58 (93%) Strand = Plus / Minus Query: 170 tcattagaagcctcgttgaaagacaagtcaaggtattctgccggactcaatcctgatg 227 ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct: 1067 tcattagaagcctcgttgaaagacaagtcaaggtactctgccaagctcaatcctgatg 1010 Score = 75.8 bits (38), Expect = 1e-10 Identities = 71/82 (86%) Strand = Plus / Minus Query: 263 tccttctttttacgcaatgactctggaagccaggacttggcgccatcaatgggtatcagt 322 ||||||||| ||||| ||| ||||||||||||||||||| ||||| ||||||||| | Sbjct: 980 tccttctttgcacgcagtgattctggaagccaggacttggatccatccctgggtatcatt 921 Query: 323 atgctgccaacgataggttgca 344 ||| ||||||| |||||||||| Sbjct: 920 atgttgccaacaataggttgca 899 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 420 agccaccccttccccctcttcctcttggccctgggctgttgtagtagttctcgcccct 477 ||||| |||||||||||||||| |||| |||||| ||||||||| ||| | |||||| Sbjct: 817 agccatcccttccccctcttccccttgatcctgggttgttgtagttgttttggcccct 760
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 83.8 bits (42), Expect = 5e-13 Identities = 54/58 (93%) Strand = Plus / Plus Query: 170 tcattagaagcctcgttgaaagacaagtcaaggtattctgccggactcaatcctgatg 227 ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct: 18339297 tcattagaagcctcgttgaaagacaagtcaaggtactctgccaagctcaatcctgatg 18339354 Score = 75.8 bits (38), Expect = 1e-10 Identities = 71/82 (86%) Strand = Plus / Plus Query: 263 tccttctttttacgcaatgactctggaagccaggacttggcgccatcaatgggtatcagt 322 ||||||||| ||||| ||| ||||||||||||||||||| ||||| ||||||||| | Sbjct: 18339384 tccttctttgcacgcagtgattctggaagccaggacttggatccatccctgggtatcatt 18339443 Query: 323 atgctgccaacgataggttgca 344 ||| ||||||| |||||||||| Sbjct: 18339444 atgttgccaacaataggttgca 18339465 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 420 agccaccccttccccctcttcctcttggccctgggctgttgtagtagttctcgcccct 477 ||||| |||||||||||||||| |||| |||||| ||||||||| ||| | |||||| Sbjct: 18339547 agccatcccttccccctcttccccttgatcctgggttgttgtagttgttttggcccct 18339604
>dbj|AP005841.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0052M16 Length = 145423 Score = 83.8 bits (42), Expect = 5e-13 Identities = 54/58 (93%) Strand = Plus / Plus Query: 170 tcattagaagcctcgttgaaagacaagtcaaggtattctgccggactcaatcctgatg 227 ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct: 140510 tcattagaagcctcgttgaaagacaagtcaaggtactctgccaagctcaatcctgatg 140567 Score = 75.8 bits (38), Expect = 1e-10 Identities = 71/82 (86%) Strand = Plus / Plus Query: 263 tccttctttttacgcaatgactctggaagccaggacttggcgccatcaatgggtatcagt 322 ||||||||| ||||| ||| ||||||||||||||||||| ||||| ||||||||| | Sbjct: 140597 tccttctttgcacgcagtgattctggaagccaggacttggatccatccctgggtatcatt 140656 Query: 323 atgctgccaacgataggttgca 344 ||| ||||||| |||||||||| Sbjct: 140657 atgttgccaacaataggttgca 140678 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 420 agccaccccttccccctcttcctcttggccctgggctgttgtagtagttctcgcccct 477 ||||| |||||||||||||||| |||| |||||| ||||||||| ||| | |||||| Sbjct: 140760 agccatcccttccccctcttccccttgatcctgggttgttgtagttgttttggcccct 140817
>dbj|AP004861.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0001A11 Length = 153252 Score = 83.8 bits (42), Expect = 5e-13 Identities = 54/58 (93%) Strand = Plus / Plus Query: 170 tcattagaagcctcgttgaaagacaagtcaaggtattctgccggactcaatcctgatg 227 ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct: 2221 tcattagaagcctcgttgaaagacaagtcaaggtactctgccaagctcaatcctgatg 2278 Score = 75.8 bits (38), Expect = 1e-10 Identities = 71/82 (86%) Strand = Plus / Plus Query: 263 tccttctttttacgcaatgactctggaagccaggacttggcgccatcaatgggtatcagt 322 ||||||||| ||||| ||| ||||||||||||||||||| ||||| ||||||||| | Sbjct: 2308 tccttctttgcacgcagtgattctggaagccaggacttggatccatccctgggtatcatt 2367 Query: 323 atgctgccaacgataggttgca 344 ||| ||||||| |||||||||| Sbjct: 2368 atgttgccaacaataggttgca 2389 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 420 agccaccccttccccctcttcctcttggccctgggctgttgtagtagttctcgcccct 477 ||||| |||||||||||||||| |||| |||||| ||||||||| ||| | |||||| Sbjct: 2471 agccatcccttccccctcttccccttgatcctgggttgttgtagttgttttggcccct 2528
>dbj|AK104001.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-E05, full insert sequence Length = 1312 Score = 83.8 bits (42), Expect = 5e-13 Identities = 54/58 (93%) Strand = Plus / Minus Query: 170 tcattagaagcctcgttgaaagacaagtcaaggtattctgccggactcaatcctgatg 227 ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct: 1067 tcattagaagcctcgttgaaagacaagtcaaggtactctgccaagctcaatcctgatg 1010 Score = 75.8 bits (38), Expect = 1e-10 Identities = 71/82 (86%) Strand = Plus / Minus Query: 263 tccttctttttacgcaatgactctggaagccaggacttggcgccatcaatgggtatcagt 322 ||||||||| ||||| ||| ||||||||||||||||||| ||||| ||||||||| | Sbjct: 980 tccttctttgcacgcagtgattctggaagccaggacttggatccatccctgggtatcatt 921 Query: 323 atgctgccaacgataggttgca 344 ||| ||||||| |||||||||| Sbjct: 920 atgttgccaacaataggttgca 899 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 420 agccaccccttccccctcttcctcttggccctgggctgttgtagtagttctcgcccct 477 ||||| |||||||||||||||| |||| |||||| ||||||||| ||| | |||||| Sbjct: 817 agccatcccttccccctcttccccttgatcctgggttgttgtagttgttttggcccct 760
>dbj|AK067961.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123J20, full insert sequence Length = 1363 Score = 83.8 bits (42), Expect = 5e-13 Identities = 54/58 (93%) Strand = Plus / Minus Query: 170 tcattagaagcctcgttgaaagacaagtcaaggtattctgccggactcaatcctgatg 227 ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct: 1067 tcattagaagcctcgttgaaagacaagtcaaggtactctgccaagctcaatcctgatg 1010 Score = 75.8 bits (38), Expect = 1e-10 Identities = 71/82 (86%) Strand = Plus / Minus Query: 263 tccttctttttacgcaatgactctggaagccaggacttggcgccatcaatgggtatcagt 322 ||||||||| ||||| ||| ||||||||||||||||||| ||||| ||||||||| | Sbjct: 980 tccttctttgcacgcagtgattctggaagccaggacttggatccatccctgggtatcatt 921 Query: 323 atgctgccaacgataggttgca 344 ||| ||||||| |||||||||| Sbjct: 920 atgttgccaacaataggttgca 899 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 420 agccaccccttccccctcttcctcttggccctgggctgttgtagtagttctcgcccct 477 ||||| |||||||||||||||| |||| |||||| ||||||||| ||| | |||||| Sbjct: 817 agccatcccttccccctcttccccttgatcctgggttgttgtagttgttttggcccct 760
>gb|AC113988.8| Mus musculus chromosome 3, clone RP24-129H9, complete sequence Length = 181881 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 125 aaaggaagtcctgacactaagaa 147 ||||||||||||||||||||||| Sbjct: 39371 aaaggaagtcctgacactaagaa 39393
>gb|AC079845.31| Mus musculus clone rp23-461a12, complete sequence Length = 206117 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 125 aaaggaagtcctgacactaagaa 147 ||||||||||||||||||||||| Sbjct: 199034 aaaggaagtcctgacactaagaa 199056
>gb|AC132859.11| Mus musculus chromosome 1, clone RP24-389O14, complete sequence Length = 128305 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Plus Query: 425 ccccttccccctcttcctcttggccc 450 ||||||||||||||||| |||||||| Sbjct: 72045 ccccttccccctcttccccttggccc 72070
>gb|AC165089.5| Mus musculus BAC clone RP23-85H2 from chromosome 19, complete sequence Length = 247216 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 247 tccttggttaggtgcctccttctttt 272 |||||| ||||||||||||||||||| Sbjct: 121127 tccttgtttaggtgcctccttctttt 121102
>gb|BC081708.1| Rattus norvegicus peroxisomal biogenesis factor 14, mRNA (cDNA clone MGC:93110 IMAGE:7191447), complete cds Length = 1917 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 422 ccaccccttccccctcttcct 442 ||||||||||||||||||||| Sbjct: 912 ccaccccttccccctcttcct 892
>ref|XM_959952.1| Neurospora crassa OR74A hypothetical protein (NCU07498.1) partial mRNA Length = 3810 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 425 ccccttccccctcttcctctt 445 ||||||||||||||||||||| Sbjct: 3606 ccccttccccctcttcctctt 3586
>ref|XM_327783.1| Neurospora crassa OR74A hypothetical protein (NCU07498.1) partial mRNA Length = 3810 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 425 ccccttccccctcttcctctt 445 ||||||||||||||||||||| Sbjct: 3606 ccccttccccctcttcctctt 3586
>gb|AC106595.9| Rattus norvegicus 7 BAC CH230-237N20 (Children's Hospital Oakland Research Institute) complete sequence Length = 214961 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 306 catcaatgggtatcagtatgc 326 ||||||||||||||||||||| Sbjct: 117961 catcaatgggtatcagtatgc 117981
>gb|AC164588.4| Mus musculus chromosome 5, clone RP24-304H2, complete sequence Length = 188602 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 425 ccccttccccctcttcctctt 445 ||||||||||||||||||||| Sbjct: 151586 ccccttccccctcttcctctt 151566
>ref|XM_850146.1| PREDICTED: Canis familiaris similar to cyclic nucleotide gated channel alpha 2 (LOC612414), mRNA Length = 1995 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 414 tgtggaagccaccccttcccc 434 ||||||||||||||||||||| Sbjct: 202 tgtggaagccaccccttcccc 182
>gb|AC122847.4| Mus musculus BAC clone RP23-163F2 from 6, complete sequence Length = 193343 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 83 ctgagaacaacagcaatcctaatgg 107 ||||||||||||| ||||||||||| Sbjct: 74669 ctgagaacaacaggaatcctaatgg 74645
>gb|AC148360.10| Medicago truncatula clone mth2-27i5, complete sequence Length = 113746 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 55 aaacaaattaaaaggtgatgaatat 79 |||||||||||||||| |||||||| Sbjct: 11504 aaacaaattaaaaggttatgaatat 11480
>gb|AE016795.2| Vibrio vulnificus CMCP6 chromosome I complete sequence Length = 3281944 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 225 atgttggatttggtatcgttc 245 ||||||||||||||||||||| Sbjct: 2519767 atgttggatttggtatcgttc 2519787
>emb|AL050343.17|HSJ657D16 Human DNA sequence from clone RP4-657D16 on chromosome 1p32.2-34.2 Contains the 3' end of the OSBPL9 gene for oxysterol binding protein-like 9, a glyceraldehyde-3-phosphate dehydrogenase (GAPD) pseudogene, a solute carrier family 25 (mitochondrial carrier adenine nucleotide translocator) member 4 (SLC25A4) pseudogene, the 3' end of the NRD1 gene for nardilysin (N-arginine dibasic convertase), a novel gene and a CpG island, complete sequence Length = 136312 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 425 ccccttccccctcttcctctt 445 ||||||||||||||||||||| Sbjct: 47987 ccccttccccctcttcctctt 47967
>emb|X59754.1|MFPEPC M.fuscata mRNA for progastricsin (pepsinogen C) Length = 1276 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 432 cccctcttcctcttggccctg 452 ||||||||||||||||||||| Sbjct: 1161 cccctcttcctcttggccctg 1181
>emb|BX296542.12| Zebrafish DNA sequence from clone CH211-278C10 in linkage group 9, complete sequence Length = 174884 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 157 cgtctcattagactcattaga 177 ||||||||||||||||||||| Sbjct: 114560 cgtctcattagactcattaga 114580
>gb|AC155930.3| Mus musculus BAC clone RP23-412K9 from chromosome 7, complete sequence Length = 187418 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 425 ccccttccccctcttcctctt 445 ||||||||||||||||||||| Sbjct: 88754 ccccttccccctcttcctctt 88734
>gb|AC119939.14| Mus musculus chromosome 5, clone RP24-267A23, complete sequence Length = 180700 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 425 ccccttccccctcttcctctt 445 ||||||||||||||||||||| Sbjct: 73108 ccccttccccctcttcctctt 73088
>dbj|AP003027.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-25I9, complete sequence Length = 167067 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 337 aggttgcaggtcctgccaagg 357 ||||||||||||||||||||| Sbjct: 135765 aggttgcaggtcctgccaagg 135745
>gb|AC126052.4| Mus musculus BAC clone RP23-277H6 from 7, complete sequence Length = 202833 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 425 ccccttccccctcttcctctt 445 ||||||||||||||||||||| Sbjct: 13524 ccccttccccctcttcctctt 13504
>dbj|AB208851.1| Homo sapiens mRNA for oxysterol-binding protein-like protein 9 isoform f variant protein Length = 4521 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 425 ccccttccccctcttcctctt 445 ||||||||||||||||||||| Sbjct: 1401 ccccttccccctcttcctctt 1421
>ref|NM_006216.2| Homo sapiens serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 (SERPINE2), mRNA Length = 2120 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 tccccctcttcctcttggcc 449 |||||||||||||||||||| Sbjct: 214 tccccctcttcctcttggcc 233
>ref|NM_003077.2| Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 (SMARCD2), mRNA Length = 2704 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 gttaggtgcctccttctttt 272 |||||||||||||||||||| Sbjct: 2410 gttaggtgcctccttctttt 2429
>gb|BC042628.1| Homo sapiens serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2, mRNA (cDNA clone MGC:42573 IMAGE:4824856), complete cds Length = 2611 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 tccccctcttcctcttggcc 449 |||||||||||||||||||| Sbjct: 674 tccccctcttcctcttggcc 693
>gb|BC015663.2| Homo sapiens serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2, mRNA (cDNA clone MGC:23129 IMAGE:4578406), complete cds Length = 2120 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 tccccctcttcctcttggcc 449 |||||||||||||||||||| Sbjct: 214 tccccctcttcctcttggcc 233
>gb|AC117678.16| Mus musculus chromosome 6, clone RP23-421M9, complete sequence Length = 204437 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 catgctaaaaggaagtcctg 137 |||||||||||||||||||| Sbjct: 157315 catgctaaaaggaagtcctg 157296
>gb|AC156398.13| Mus musculus 6 BAC RP24-279F16 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 170925 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 426 cccttccccctcttcctctt 445 |||||||||||||||||||| Sbjct: 107874 cccttccccctcttcctctt 107855
>emb|AL591962.15| Human DNA sequence from clone RP11-346O16 on chromosome 6, complete sequence Length = 86881 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 atgactctggaagccaggac 298 |||||||||||||||||||| Sbjct: 36012 atgactctggaagccaggac 36031
>emb|AL391003.15| Human DNA sequence from clone RP11-205P11 on chromosome 1 Contains the 3' end of a novel gene, complete sequence Length = 15761 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 426 cccttccccctcttcctctt 445 |||||||||||||||||||| Sbjct: 9181 cccttccccctcttcctctt 9162
>gb|AY341244.1| Homo sapiens clusterin (complement lysis inhibitor, SP-40,40, sulfated glycoprotein 2, testosterone-repressed prostate message 2, apolipoprotein J) (CLU) gene, complete cds Length = 15440 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 438 ttcctcttggccctgggctg 457 |||||||||||||||||||| Sbjct: 10977 ttcctcttggccctgggctg 10958
>gb|AF311103.5| Homo sapiens chromosome 8 clone SCb-212E3 map p21-p11, complete sequence Length = 234429 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 438 ttcctcttggccctgggctg 457 |||||||||||||||||||| Sbjct: 211395 ttcctcttggccctgggctg 211414
>gb|BC018953.2| Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2, mRNA (cDNA clone IMAGE:4303183), partial cds Length = 1112 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 gttaggtgcctccttctttt 272 |||||||||||||||||||| Sbjct: 797 gttaggtgcctccttctttt 816
>gb|AC158799.8| Mus musculus BAC RP24-430K11 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 161705 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 305 ccatcaatgggtatcagtat 324 |||||||||||||||||||| Sbjct: 124267 ccatcaatgggtatcagtat 124286
>gb|AC109806.12| Mus musculus chromosome 1, clone RP23-310C14, complete sequence Length = 198227 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 425 ccccttccccctcttcctct 444 |||||||||||||||||||| Sbjct: 126093 ccccttccccctcttcctct 126112
>gb|AC044781.12| Homo sapiens chromosome 10 clone RP11-142M10, complete sequence Length = 177448 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 tcatgtcacgtctcattaga 168 |||||||||||||||||||| Sbjct: 122119 tcatgtcacgtctcattaga 122138
>gb|AF336378.1| Mus musculus Kel blood group protein (Kel), epithelial calcium channel 1 (Ecac1), epithelial calcium channel 2 (Ecac2), and ephrin type A receptor (Mep) genes, complete cds; and T cell receptor beta chain (Tcr) gene, partial cds Length = 169781 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 catgctaaaaggaagtcctg 137 |||||||||||||||||||| Sbjct: 81374 catgctaaaaggaagtcctg 81393
>emb|CR612124.1| full-length cDNA clone CS0DI007YN20 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1321 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 gttaggtgcctccttctttt 272 |||||||||||||||||||| Sbjct: 1054 gttaggtgcctccttctttt 1073
>gb|AC098970.2| Homo sapiens chromosome 3 clone RP11-30G4, complete sequence Length = 153590 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 cacagatcaaaatctttgta 20 |||||||||||||||||||| Sbjct: 39983 cacagatcaaaatctttgta 40002
>emb|CR593297.1| full-length cDNA clone CS0DI027YF22 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1588 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 gttaggtgcctccttctttt 272 |||||||||||||||||||| Sbjct: 1323 gttaggtgcctccttctttt 1342
>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 Length = 4429080 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 agaaacaaattaaaaggtga 72 |||||||||||||||||||| Sbjct: 3370722 agaaacaaattaaaaggtga 3370703
>gb|AF068245.1| Homo sapiens BAF60b gene, partial sequence Length = 975 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 gttaggtgcctccttctttt 272 |||||||||||||||||||| Sbjct: 412 gttaggtgcctccttctttt 393
>gb|AC091861.3| Homo sapiens chromosome 5 clone CTD-2339B8, complete sequence Length = 39248 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 422 ccaccccttccccctcttcc 441 |||||||||||||||||||| Sbjct: 23190 ccaccccttccccctcttcc 23171
>gb|AC026698.6| Homo sapiens chromosome 5 clone CTC-457H17, complete sequence Length = 192731 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 422 ccaccccttccccctcttcc 441 |||||||||||||||||||| Sbjct: 192508 ccaccccttccccctcttcc 192489
>gb|AE009903.1|AE009903 Pyrobaculum aerophilum strain IM2 section 158 of 201 of the complete genome Length = 11615 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 430 tccccctcttcctcttggcc 449 |||||||||||||||||||| Sbjct: 593 tccccctcttcctcttggcc 574
>gb|AC016623.6| Homo sapiens chromosome 5 clone CTD-2345N17, complete sequence Length = 153823 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 atatgctgagaacaacagca 97 |||||||||||||||||||| Sbjct: 27908 atatgctgagaacaacagca 27889
>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome Length = 6260361 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 attaaaaggtgatgaatata 80 |||||||||||||||||||| Sbjct: 949138 attaaaaggtgatgaatata 949157
>gb|AC073536.5| Homo sapiens chromosome 5 clone CTD-2068E4, complete sequence Length = 116993 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 atatgctgagaacaacagca 97 |||||||||||||||||||| Sbjct: 24963 atatgctgagaacaacagca 24944
>gb|AC005406.2| Homo sapiens clone b128f11, complete sequence Length = 226345 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 422 ccaccccttccccctcttcc 441 |||||||||||||||||||| Sbjct: 218 ccaccccttccccctcttcc 237
>gb|AF113019.1|AF113019 Homo sapiens PRO2451 mRNA, complete cds Length = 1216 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 gttaggtgcctccttctttt 272 |||||||||||||||||||| Sbjct: 809 gttaggtgcctccttctttt 828
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 231 gatttggtatcgttcgtccttggt 254 ||||||| |||||||||||||||| Sbjct: 29015648 gatttggaatcgttcgtccttggt 29015625 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 agaacaacagcaatcctaat 105 |||||||||||||||||||| Sbjct: 8789575 agaacaacagcaatcctaat 8789556
>gb|AC015651.18|AC015651 Homo sapiens chromosome 17, clone RP11-55A13, complete sequence Length = 191583 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 gttaggtgcctccttctttt 272 |||||||||||||||||||| Sbjct: 41792 gttaggtgcctccttctttt 41811
>gb|AC073641.3| Homo sapiens BAC clone RP11-368E14 from 2, complete sequence Length = 197709 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 430 tccccctcttcctcttggcc 449 |||||||||||||||||||| Sbjct: 146892 tccccctcttcctcttggcc 146873
>ref|NM_172063.1| Rattus norvegicus peroxisomal biogenesis factor 14 (Pex14), mRNA Length = 1903 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 423 caccccttccccctcttcct 442 |||||||||||||||||||| Sbjct: 922 caccccttccccctcttcct 903
>gb|AC090826.15| Homo sapiens chromosome 15, clone CTD-2311M21, complete sequence Length = 169518 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 gaacaacagcaatcctaatg 106 |||||||||||||||||||| Sbjct: 66796 gaacaacagcaatcctaatg 66777
>dbj|AP005382.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1001_B06 Length = 134810 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 agaacaacagcaatcctaat 105 |||||||||||||||||||| Sbjct: 59896 agaacaacagcaatcctaat 59877
>dbj|AP003726.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0596H10 Length = 166570 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 231 gatttggtatcgttcgtccttggt 254 ||||||| |||||||||||||||| Sbjct: 30635 gatttggaatcgttcgtccttggt 30612
>emb|BX649430.3| Mouse DNA sequence from clone RP24-553E7 on chromosome 2, complete sequence Length = 31120 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 425 ccccttccccctcttcctct 444 |||||||||||||||||||| Sbjct: 3783 ccccttccccctcttcctct 3764
>dbj|AK025917.1| Homo sapiens cDNA: FLJ22264 fis, clone HRC03066, highly similar to AF113019 Homo sapiens PRO2451 mRNA Length = 1350 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 gttaggtgcctccttctttt 272 |||||||||||||||||||| Sbjct: 1037 gttaggtgcctccttctttt 1056
>emb|BX842613.7| Zebrafish DNA sequence from clone CH211-227J9 in linkage group 19, complete sequence Length = 166128 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 420 agccaccccttccccctcttcctc 443 |||||||||||| ||||||||||| Sbjct: 108348 agccaccccttctccctcttcctc 108371
>emb|BX004796.6| Mouse DNA sequence from clone RP23-345M13 on chromosome 4, complete sequence Length = 40707 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 426 cccttccccctcttcctctt 445 |||||||||||||||||||| Sbjct: 2002 cccttccccctcttcctctt 2021
>emb|AL627083.18| Mouse DNA sequence from clone RP23-378E2 on chromosome 4, complete sequence Length = 219379 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 417 ggaagccaccccttccccct 436 |||||||||||||||||||| Sbjct: 19546 ggaagccaccccttccccct 19565
>gb|AC158142.19| Mus musculus chromosome 15, clone RP24-342H15, complete sequence Length = 195319 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 422 ccaccccttccccctcttcc 441 |||||||||||||||||||| Sbjct: 85162 ccaccccttccccctcttcc 85181
>gb|L00974.1|HUMSP4040A Homo sapiens SP40,40 gene, exons 5-9 Length = 8133 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 438 ttcctcttggccctgggctg 457 |||||||||||||||||||| Sbjct: 4351 ttcctcttggccctgggctg 4332
>gb|M17783.1|HUMGDN Human glia-derived nexin (GDN) mRNA, 5' end Length = 1191 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 tccccctcttcctcttggcc 449 |||||||||||||||||||| Sbjct: 14 tccccctcttcctcttggcc 33
>dbj|AB017544.1| Rattus norvegicus Pex14 mRNA for peroxisomal membrane anchor protein, complete cds Length = 1903 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 423 caccccttccccctcttcct 442 |||||||||||||||||||| Sbjct: 922 caccccttccccctcttcct 903 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,434,342 Number of Sequences: 3902068 Number of extensions: 4434342 Number of successful extensions: 92406 Number of sequences better than 10.0: 72 Number of HSP's better than 10.0 without gapping: 73 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 92091 Number of HSP's gapped (non-prelim): 315 length of query: 484 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 462 effective length of database: 17,147,199,772 effective search space: 7922006294664 effective search space used: 7922006294664 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)