ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart31d09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AJ567371.1|HVU567371 Hordeum vulgare mRNA for putative 3-bet... 72 6e-11
2emb|AJ577570.1|TAE577570 Triticum aestivum partial mRNA for beta... 58 1e-06
3gb|AC123529.3| Mus musculus BAC clone RP23-425M11 from chromosom... 40 0.23
4gb|AC116731.9| Mus musculus chromosome 8, clone RP23-346D17, com... 40 0.23
5gb|AC138457.3| Mus musculus BAC clone RP23-358E1 from chromosome... 36 3.5
6gb|AC091763.25| Mus musculus strain C57BL/6J clone rp23-198o2 ma... 36 3.5
7gb|AC157351.11| Mus musculus chromosome 5, clone RP23-219K16, co... 36 3.5
8gb|AC155242.2| Mus musculus BAC clone RP24-496G24 from chromosom... 36 3.5
9emb|AL929200.8| Zebrafish DNA sequence from clone CH211-190B21, ... 36 3.5
10emb|AL954698.9| Zebrafish DNA sequence from clone CH211-233B16 i... 36 3.5
11emb|AL928872.7| Zebrafish DNA sequence from clone DKEYP-59A2, co... 36 3.5
12gb|AC151478.1| Mus musculus BAC clone RP23-83K12 from 19, comple... 36 3.5

>emb|AJ567371.1|HVU567371 Hordeum vulgare mRNA for putative 3-beta-glucuronosyltransferase
            (pglcat6 gene), clone 2
          Length = 1576

 Score = 71.9 bits (36), Expect = 6e-11
 Identities = 36/36 (100%)
 Strand = Plus / Minus

                                                
Query: 1    acaaatctgtggtattgcattcactgtcaacagctg 36
            ||||||||||||||||||||||||||||||||||||
Sbjct: 1558 acaaatctgtggtattgcattcactgtcaacagctg 1523



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>emb|AJ577570.1|TAE577570 Triticum aestivum partial mRNA for beta3-glucuronyltransferase
            (pglcat6 gene)
          Length = 1503

 Score = 58.0 bits (29), Expect = 1e-06
 Identities = 36/37 (97%), Gaps = 1/37 (2%)
 Strand = Plus / Minus

                                                 
Query: 1    acaaatctgtggtattgcattcactg-tcaacagctg 36
            |||||||||||||||||||||||||| ||||||||||
Sbjct: 1486 acaaatctgtggtattgcattcactgttcaacagctg 1450



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>gb|AC123529.3| Mus musculus BAC clone RP23-425M11 from chromosome 8, complete sequence
          Length = 181535

 Score = 40.1 bits (20), Expect = 0.23
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 16     tgcattcactgtcaacagct 35
              ||||||||||||||||||||
Sbjct: 139720 tgcattcactgtcaacagct 139739



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>gb|AC116731.9| Mus musculus chromosome 8, clone RP23-346D17, complete sequence
          Length = 230139

 Score = 40.1 bits (20), Expect = 0.23
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    tgcattcactgtcaacagct 35
             ||||||||||||||||||||
Sbjct: 61845 tgcattcactgtcaacagct 61864



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>gb|AC138457.3| Mus musculus BAC clone RP23-358E1 from chromosome 19, complete sequence
          Length = 237854

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 13     tattgcattcactgtcaa 30
              ||||||||||||||||||
Sbjct: 222929 tattgcattcactgtcaa 222946



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>gb|AC091763.25| Mus musculus strain C57BL/6J clone rp23-198o2 map 10, complete sequence
          Length = 221545

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 5      atctgtggtattgcattc 22
              ||||||||||||||||||
Sbjct: 171278 atctgtggtattgcattc 171295



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>gb|AC157351.11| Mus musculus chromosome 5, clone RP23-219K16, complete sequence
          Length = 196331

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 3     aaatctgtggtattgcat 20
             ||||||||||||||||||
Sbjct: 71434 aaatctgtggtattgcat 71417



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>gb|AC155242.2| Mus musculus BAC clone RP24-496G24 from chromosome 17, complete
             sequence
          Length = 132408

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 7     ctgtggtattgcattcactgtc 28
             ||||||||||| ||||||||||
Sbjct: 10645 ctgtggtattgaattcactgtc 10666



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>emb|AL929200.8| Zebrafish DNA sequence from clone CH211-190B21, complete sequence
          Length = 120682

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 1     acaaatctgtggtattgc 18
             ||||||||||||||||||
Sbjct: 24979 acaaatctgtggtattgc 24962



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>emb|AL954698.9| Zebrafish DNA sequence from clone CH211-233B16 in linkage group 6,
              complete sequence
          Length = 177161

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 1      acaaatctgtggtattgc 18
              ||||||||||||||||||
Sbjct: 111737 acaaatctgtggtattgc 111720



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>emb|AL928872.7| Zebrafish DNA sequence from clone DKEYP-59A2, complete sequence
          Length = 200760

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 1      acaaatctgtggtattgc 18
              ||||||||||||||||||
Sbjct: 162896 acaaatctgtggtattgc 162913



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>gb|AC151478.1| Mus musculus BAC clone RP23-83K12 from 19, complete sequence
          Length = 219132

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 13     tattgcattcactgtcaa 30
              ||||||||||||||||||
Sbjct: 140814 tattgcattcactgtcaa 140797


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 242,145
Number of Sequences: 3902068
Number of extensions: 242145
Number of successful extensions: 62991
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62972
Number of HSP's gapped (non-prelim): 19
length of query: 36
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 16
effective length of database: 17,155,003,908
effective search space: 274480062528
effective search space used: 274480062528
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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