ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart31d05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 145 2e-31
2dbj|AP002537.2| Oryza sativa (japonica cultivar-group) genomic D... 145 2e-31
3dbj|AP003417.2| Oryza sativa (japonica cultivar-group) genomic D... 145 2e-31
4ref|NM_188234.1| Oryza sativa (japonica cultivar-group), predic... 143 7e-31
5ref|XM_476099.1| Oryza sativa (japonica cultivar-group), predic... 84 5e-13
6gb|AC136520.3| Oryza sativa (japonica cultivar-group) chromosome... 84 5e-13
7gb|AC136519.3| Oryza sativa (japonica cultivar-group) chromosome... 84 5e-13
8dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 84 5e-13
9dbj|AK069019.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 5e-13
10dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.12
11gb|AF206717.1|AF206717 Shuttle vector pI3 hypothetical proteins,... 46 0.12
12dbj|AP005688.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.12
13gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 42 1.9
14gb|AC161873.5| Mus musculus BAC clone RP24-100P9 from chromosome... 42 1.9
15gb|AC098876.4| Mus musculus BAC clone RP23-1O17 from 14, complet... 42 1.9
16emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete ... 42 1.9
17emb|BX640419.1| Bordetella pertussis strain Tohama I, complete g... 42 1.9
18gb|AC006420.4| Arabidopsis thaliana chromosome 2 clone T12H3 map... 42 1.9
19dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 42 1.9
20gb|AC142449.3| Mus musculus BAC clone RP24-478I6 from 14, comple... 42 1.9
21ref|XM_470001.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.3
22gb|AY687456.1| Uncultured bacterium clone HZ03 genomic sequence 40 7.3
23gb|DQ496104.1| Homo sapiens progesterone receptor membrane compo... 40 7.3
24gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 40 7.3
25gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 7.3
26gb|AC166072.2| Mus musculus BAC clone RP23-226J22 from chromosom... 40 7.3
27gb|AC135563.5| Oryza sativa chromosome 3 BAC OSJNBb0015I02 genom... 40 7.3
28gb|AC134535.4| Mus musculus BAC clone RP24-371E20 from chromosom... 40 7.3
29gb|AC092685.2| Homo sapiens BAC clone RP11-746P2 from 7, complet... 40 7.3
30gb|AC139154.3| Mus musculus chromosome 7 clone RP24-356B8, compl... 40 7.3
31gb|AC165165.3| Mus musculus BAC clone RP23-121B15 from chromosom... 40 7.3
32emb|BX294138.1| Pirellula sp. strain 1 complete genome; segment ... 40 7.3
33emb|AL939132.1|SCO939132 Streptomyces coelicolor A3(2) complete ... 40 7.3
34emb|AJ558196.1|BVI558196 Bovine viral diarrhea virus strain Oslo... 40 7.3
35gb|AC182641.3| Pan troglodytes BAC clone CH251-294H6 from chromo... 40 7.3
36dbj|AB111963.2| Bovine viral diarrhea virus 839ncp gene for pory... 40 7.3
37dbj|AB111962.2| Bovine viral diarrhea virus 799cp gene for poryp... 40 7.3
38dbj|AB111961.2| Bovine viral diarrhea virus 799ncp gene for pory... 40 7.3
39gb|AC098479.2| Homo sapiens chromosome 3 clone RP11-80H18, compl... 40 7.3
40gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 7.3
41gb|DQ067603.1| Bovine viral diarrhea virus 1 isolate Ind S-1226 ... 40 7.3
42gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 7.3
43gb|AC129342.5| Rattus norvegicus BAC CH230-229B21 (Children's H... 40 7.3
44dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
45gb|AC135507.2| Homo sapiens chromosome 3 clone RP11-802O23, comp... 40 7.3
46dbj|AP004222.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
47dbj|AP003563.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
48gb|DQ163917.1| Bacteriophage F8, complete genome 40 7.3
49emb|AJ249131.1|HSA249131 Homo sapiens partiel mPR gene for proge... 40 7.3
50emb|CT573229.8| Zebrafish DNA sequence from clone DKEY-11D7 in l... 40 7.3
51dbj|AK062698.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.3
52gb|AY105871.1| Zea mays PCO090908 mRNA sequence 40 7.3
53gb|AC004835.2|AC004835 Homo sapiens clone DJ0555N02, complete se... 40 7.3
54gb|L35850.1|BVDP125C Bovine viral diarrhea virus (strain New-Yor... 40 7.3
55gb|AF072694.1|AF072694 Oryza sativa germin-like protein 7 (GER7)... 40 7.3
56gb|AC149062.3| Mus musculus BAC clone RP23-183E20 from 7, comple... 40 7.3
57emb|AL365314.16| Mouse DNA sequence from clone RP23-106N23 on ch... 40 7.3
58emb|AL583889.8| Mouse DNA sequence from clone RP23-10K12 on chro... 40 7.3
59emb|AL583887.9| Mouse DNA sequence from clone RP23-121M7 on chro... 40 7.3
60gb|L13855.1|SH1UDNAG Pseudorabies virus uracil-DNA glycosylase g... 40 7.3 
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  145 bits (73), Expect = 2e-31
 Identities = 79/81 (97%)
 Strand = Plus / Plus

                                                                           
Query: 286     actagaaggtccacttccagatcttgactcggatcctgacctggcacacgcgcgcgacgg 345
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5131006 actagaaggtccacttccagatcttgactcggatcctgacctggcacacgcgcgcgacgg 5131065

                                    
Query: 346     tggtcgccgccgggggcgagg 366
               ||||||||| ||| |||||||
Sbjct: 5131066 tggtcgccggcggcggcgagg 5131086



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 70/85 (82%)
 Strand = Plus / Plus

                                                                           
Query: 458     cttcttcttcgccggcgcgggtgccggggagggcgcggccaccttgatgccgtcgcagtg 517
               |||||||||||||||||  || | ||| |  || ||||||||||||||||| ||||||||
Sbjct: 5131154 cttcttcttcgccggcggcggcggcggcgccggggcggccaccttgatgccctcgcagtg 5131213

                                        
Query: 518     cacctggatgccgatcttcttggtc 542
                ||  | | |||||| |||||||||
Sbjct: 5131214 gacgagcacgccgattttcttggtc 5131238



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                       
Query: 10      aatccccaaattgtacttgcacta 33
               ||||||||||||||||||||||||
Sbjct: 5130701 aatccccaaattgtacttgcacta 5130724



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 31/33 (93%), Gaps = 1/33 (3%)
 Strand = Plus / Plus

                                                
Query: 125     ccctcccccc-gccaaatttcgtaaaattcaaa 156
               |||||||||| |||||||||||| |||||||||
Sbjct: 5130816 ccctccccccagccaaatttcgtcaaattcaaa 5130848



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 372      gcgtcggcgacggccgcgga 391
                ||||||||||||||||||||
Sbjct: 18413209 gcgtcggcgacggccgcgga 18413228
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>dbj|AP002537.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0001B06
          Length = 140304

 Score =  145 bits (73), Expect = 2e-31
 Identities = 79/81 (97%)
 Strand = Plus / Plus

                                                                          
Query: 286    actagaaggtccacttccagatcttgactcggatcctgacctggcacacgcgcgcgacgg 345
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124444 actagaaggtccacttccagatcttgactcggatcctgacctggcacacgcgcgcgacgg 124503

                                   
Query: 346    tggtcgccgccgggggcgagg 366
              ||||||||| ||| |||||||
Sbjct: 124504 tggtcgccggcggcggcgagg 124524



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 70/85 (82%)
 Strand = Plus / Plus

                                                                          
Query: 458    cttcttcttcgccggcgcgggtgccggggagggcgcggccaccttgatgccgtcgcagtg 517
              |||||||||||||||||  || | ||| |  || ||||||||||||||||| ||||||||
Sbjct: 124592 cttcttcttcgccggcggcggcggcggcgccggggcggccaccttgatgccctcgcagtg 124651

                                       
Query: 518    cacctggatgccgatcttcttggtc 542
               ||  | | |||||| |||||||||
Sbjct: 124652 gacgagcacgccgattttcttggtc 124676



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 10     aatccccaaattgtacttgcacta 33
              ||||||||||||||||||||||||
Sbjct: 124139 aatccccaaattgtacttgcacta 124162



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 31/33 (93%), Gaps = 1/33 (3%)
 Strand = Plus / Plus

                                               
Query: 125    ccctcccccc-gccaaatttcgtaaaattcaaa 156
              |||||||||| |||||||||||| |||||||||
Sbjct: 124254 ccctccccccagccaaatttcgtcaaattcaaa 124286
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>dbj|AP003417.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0498B01
          Length = 146812

 Score =  145 bits (73), Expect = 2e-31
 Identities = 79/81 (97%)
 Strand = Plus / Plus

                                                                         
Query: 286   actagaaggtccacttccagatcttgactcggatcctgacctggcacacgcgcgcgacgg 345
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63037 actagaaggtccacttccagatcttgactcggatcctgacctggcacacgcgcgcgacgg 63096

                                  
Query: 346   tggtcgccgccgggggcgagg 366
             ||||||||| ||| |||||||
Sbjct: 63097 tggtcgccggcggcggcgagg 63117



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 70/85 (82%)
 Strand = Plus / Plus

                                                                         
Query: 458   cttcttcttcgccggcgcgggtgccggggagggcgcggccaccttgatgccgtcgcagtg 517
             |||||||||||||||||  || | ||| |  || ||||||||||||||||| ||||||||
Sbjct: 63185 cttcttcttcgccggcggcggcggcggcgccggggcggccaccttgatgccctcgcagtg 63244

                                      
Query: 518   cacctggatgccgatcttcttggtc 542
              ||  | | |||||| |||||||||
Sbjct: 63245 gacgagcacgccgattttcttggtc 63269



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 10    aatccccaaattgtacttgcacta 33
             ||||||||||||||||||||||||
Sbjct: 62732 aatccccaaattgtacttgcacta 62755



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 31/33 (93%), Gaps = 1/33 (3%)
 Strand = Plus / Plus

                                              
Query: 125   ccctcccccc-gccaaatttcgtaaaattcaaa 156
             |||||||||| |||||||||||| |||||||||
Sbjct: 62847 ccctccccccagccaaatttcgtcaaattcaaa 62879
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>ref|NM_188234.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 987

 Score =  143 bits (72), Expect = 7e-31
 Identities = 78/80 (97%)
 Strand = Plus / Minus

                                                                       
Query: 287 ctagaaggtccacttccagatcttgactcggatcctgacctggcacacgcgcgcgacggt 346
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987 ctagaaggtccacttccagatcttgactcggatcctgacctggcacacgcgcgcgacggt 928

                               
Query: 347 ggtcgccgccgggggcgagg 366
           |||||||| ||| |||||||
Sbjct: 927 ggtcgccggcggcggcgagg 908



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 70/85 (82%)
 Strand = Plus / Minus

                                                                       
Query: 458 cttcttcttcgccggcgcgggtgccggggagggcgcggccaccttgatgccgtcgcagtg 517
           |||||||||||||||||  || | ||| |  || ||||||||||||||||| ||||||||
Sbjct: 840 cttcttcttcgccggcggcggcggcggcgccggggcggccaccttgatgccctcgcagtg 781

                                    
Query: 518 cacctggatgccgatcttcttggtc 542
            ||  | | |||||| |||||||||
Sbjct: 780 gacgagcacgccgattttcttggtc 756
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>ref|XM_476099.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 876

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 45/46 (97%)
 Strand = Plus / Minus

                                                         
Query: 497 caccttgatgccgtcgcagtgcacctggatgccgatcttcttggtc 542
           |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 690 caccttgatgccctcgcagtgcacctggatgccgatcttcttggtc 645



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 291 aaggtccacttccagatcttgactcggatcctgacctggcac 332
           ||||||||||||||||||||||| ||||  ||||||| ||||
Sbjct: 872 aaggtccacttccagatcttgacacggactctgaccttgcac 831
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>gb|AC136520.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0017O06, complete sequence
          Length = 151656

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 45/46 (97%)
 Strand = Plus / Plus

                                                           
Query: 497   caccttgatgccgtcgcagtgcacctggatgccgatcttcttggtc 542
             |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 31119 caccttgatgccctcgcagtgcacctggatgccgatcttcttggtc 31164



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                       
Query: 291   aaggtccacttccagatcttgactcggatcctgacctggcac 332
             ||||||||||||||||||||||| ||||  ||||||| ||||
Sbjct: 30937 aaggtccacttccagatcttgacacggactctgaccttgcac 30978
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>gb|AC136519.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0007C23,
              complete sequence
          Length = 173764

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 45/46 (97%)
 Strand = Plus / Plus

                                                            
Query: 497    caccttgatgccgtcgcagtgcacctggatgccgatcttcttggtc 542
              |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 131104 caccttgatgccctcgcagtgcacctggatgccgatcttcttggtc 131149



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                        
Query: 291    aaggtccacttccagatcttgactcggatcctgacctggcac 332
              ||||||||||||||||||||||| ||||  ||||||| ||||
Sbjct: 130922 aaggtccacttccagatcttgacacggactctgaccttgcac 130963
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 45/46 (97%)
 Strand = Plus / Plus

                                                             
Query: 497     caccttgatgccgtcgcagtgcacctggatgccgatcttcttggtc 542
               |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 6083550 caccttgatgccctcgcagtgcacctggatgccgatcttcttggtc 6083595



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                         
Query: 291     aaggtccacttccagatcttgactcggatcctgacctggcac 332
               ||||||||||||||||||||||| ||||  ||||||| ||||
Sbjct: 6083368 aaggtccacttccagatcttgacacggactctgaccttgcac 6083409
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>dbj|AK069019.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170B15, full
           insert sequence
          Length = 1270

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 45/46 (97%)
 Strand = Plus / Minus

                                                         
Query: 497 caccttgatgccgtcgcagtgcacctggatgccgatcttcttggtc 542
           |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 805 caccttgatgccctcgcagtgcacctggatgccgatcttcttggtc 760



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 291 aaggtccacttccagatcttgactcggatcctgacctggcac 332
           ||||||||||||||||||||||| ||||  ||||||| ||||
Sbjct: 987 aaggtccacttccagatcttgacacggactctgaccttgcac 946
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 449      cttcacccccttcttcttcgccg 471
                |||||||||||||||||||||||
Sbjct: 13947980 cttcacccccttcttcttcgccg 13947958
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>gb|AF206717.1|AF206717 Shuttle vector pI3 hypothetical proteins, HtrU (htrU), ArdU (ardU),
             RepU (repU), and ResU (resU) genes, complete cds
          Length = 11910

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 455   ccccttcttcttcgccggcgcgggtgc 481
             ||||||||||||| |||||||||||||
Sbjct: 10030 ccccttcttcttctccggcgcgggtgc 10056
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>dbj|AP005688.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0031J07
          Length = 172511

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 449   cttcacccccttcttcttcgccg 471
             |||||||||||||||||||||||
Sbjct: 65200 cttcacccccttcttcttcgccg 65178
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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 342    acggtggtcgccgccgggggcgagg 366
              |||||||||||||||| ||||||||
Sbjct: 663351 acggtggtcgccgccgagggcgagg 663375
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>gb|AC161873.5| Mus musculus BAC clone RP24-100P9 from chromosome 14, complete sequence
          Length = 240703

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 109   cctcacatcactcctcccctccccc 133
             ||||||||||| |||||||||||||
Sbjct: 15967 cctcacatcacccctcccctccccc 15991
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>gb|AC098876.4| Mus musculus BAC clone RP23-1O17 from 14, complete sequence
          Length = 234499

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 109   cctcacatcactcctcccctccccc 133
             ||||||||||| |||||||||||||
Sbjct: 21691 cctcacatcacccctcccctccccc 21667
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>emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete genome; segment 6/16
          Length = 349876

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 467    cgccggcgcgggtgccggggagggcgcgg 495
              |||||||||||| ||||||| ||||||||
Sbjct: 305362 cgccggcgcgggggccggggcgggcgcgg 305390
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>emb|BX640419.1| Bordetella pertussis strain Tohama I, complete genome; segment 9/12
          Length = 349672

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 467    cgccggcgcgggtgccggggagggcgcgg 495
              |||||||||||| ||||||| ||||||||
Sbjct: 181662 cgccggcgcgggggccggggcgggcgcgg 181634
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>gb|AC006420.4| Arabidopsis thaliana chromosome 2 clone T12H3 map ve013, complete
            sequence
          Length = 96332

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 114  catcactcctcccctcccccc 134
            |||||||||||||||||||||
Sbjct: 3494 catcactcctcccctcccccc 3514
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 374     gtcggcgacggccgcggacgg 394
               |||||||||||||||||||||
Sbjct: 3596795 gtcggcgacggccgcggacgg 3596815
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>gb|AC142449.3| Mus musculus BAC clone RP24-478I6 from 14, complete sequence
          Length = 173207

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 109   cctcacatcactcctcccctccccc 133
             ||||||||||| |||||||||||||
Sbjct: 50416 cctcacatcacccctcccctccccc 50392
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>ref|XM_470001.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 856

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 350 cgccgccgggggcgaggtcg 369
           ||||||||||||||||||||
Sbjct: 370 cgccgccgggggcgaggtcg 351
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>gb|AY687456.1| Uncultured bacterium clone HZ03 genomic sequence
          Length = 5698

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 465  ttcgccggcgcgggtgccggggagggcg 492
            |||||||||||||||| || ||||||||
Sbjct: 5605 ttcgccggcgcgggtgtcgcggagggcg 5578
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>gb|DQ496104.1| Homo sapiens progesterone receptor membrane component 1 (PGRMC1)
           gene, complete cds
          Length = 12050

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 119 ctcctcccctccccccgcca 138
           ||||||||||||||||||||
Sbjct: 876 ctcctcccctccccccgcca 895
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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 343     cggtggtcgccgccgggggc 362
               ||||||||||||||||||||
Sbjct: 1944064 cggtggtcgccgccgggggc 1944045
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 350      cgccgccgggggcgaggtcg 369
                ||||||||||||||||||||
Sbjct: 33282910 cgccgccgggggcgaggtcg 33282891
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>gb|AC166072.2| Mus musculus BAC clone RP23-226J22 from chromosome 3, complete sequence
          Length = 221724

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 114   catcactcctcccctccccc 133
             ||||||||||||||||||||
Sbjct: 20731 catcactcctcccctccccc 20750
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>gb|AC135563.5| Oryza sativa chromosome 3 BAC OSJNBb0015I02 genomic sequence, complete
             sequence
          Length = 122815

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 350   cgccgccgggggcgaggtcg 369
             ||||||||||||||||||||
Sbjct: 39426 cgccgccgggggcgaggtcg 39407
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>gb|AC134535.4| Mus musculus BAC clone RP24-371E20 from chromosome 7, complete sequence
          Length = 214571

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 106    aaacctcacatcactcctcccctccccc 133
              ||||||||||||| ||||| ||||||||
Sbjct: 181677 aaacctcacatcaatcctcgcctccccc 181650
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>gb|AC092685.2| Homo sapiens BAC clone RP11-746P2 from 7, complete sequence
          Length = 183263

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 121    cctcccctccccccgccaaa 140
              ||||||||||||||||||||
Sbjct: 144555 cctcccctccccccgccaaa 144574
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>gb|AC139154.3| Mus musculus chromosome 7 clone RP24-356B8, complete sequence
          Length = 164774

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 106   aaacctcacatcactcctcccctccccc 133
             ||||||||||||| ||||| ||||||||
Sbjct: 59219 aaacctcacatcaatcctcgcctccccc 59192
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>gb|AC165165.3| Mus musculus BAC clone RP23-121B15 from chromosome 3, complete sequence
          Length = 228648

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 114    catcactcctcccctccccc 133
              ||||||||||||||||||||
Sbjct: 178133 catcactcctcccctccccc 178152
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>emb|BX294138.1| Pirellula sp. strain 1 complete genome; segment 6/24
          Length = 321950

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 360    ggcgaggtcgttgcgtcggc 379
              ||||||||||||||||||||
Sbjct: 239743 ggcgaggtcgttgcgtcggc 239724
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>emb|AL939132.1|SCO939132 Streptomyces coelicolor A3(2) complete genome; segment 29/29
          Length = 302007

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 384    gccgcggacggctccggggc 403
              ||||||||||||||||||||
Sbjct: 127380 gccgcggacggctccggggc 127399
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>emb|AJ558196.1|BVI558196 Bovine viral diarrhea virus strain Osloss partial polyprotein gene,
            genomic RNA isolate Ind S-1210
          Length = 1158

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 287  ctagaaggtccacttccagatctt 310
            |||||||||||||| |||||||||
Sbjct: 1084 ctagaaggtccactgccagatctt 1061
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>gb|AC182641.3| Pan troglodytes BAC clone CH251-294H6 from chromosome 7, complete
             sequence
          Length = 145564

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 121   cctcccctccccccgccaaa 140
             ||||||||||||||||||||
Sbjct: 43856 cctcccctccccccgccaaa 43837
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>dbj|AB111963.2| Bovine viral diarrhea virus 839ncp gene for poryprotein, partai cds,
            strain: 839ncp
          Length = 7844

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 287  ctagaaggtccacttccagatctt 310
            |||||||||||||| |||||||||
Sbjct: 6981 ctagaaggtccactgccagatctt 6958
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>dbj|AB111962.2| Bovine viral diarrhea virus 799cp gene for poryprotein, partai cds,
            strain: 799cp
          Length = 8736

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 287  ctagaaggtccacttccagatctt 310
            |||||||||||||| |||||||||
Sbjct: 7878 ctagaaggtccactgccagatctt 7855
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>dbj|AB111961.2| Bovine viral diarrhea virus 799ncp gene for poryprotein, partai cds,
            strain: 799ncp
          Length = 7844

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 287  ctagaaggtccacttccagatctt 310
            |||||||||||||| |||||||||
Sbjct: 6981 ctagaaggtccactgccagatctt 6958
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>gb|AC098479.2| Homo sapiens chromosome 3 clone RP11-80H18, complete sequence
          Length = 178010

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 122    ctcccctccccccgccaaat 141
              ||||||||||||||||||||
Sbjct: 175954 ctcccctccccccgccaaat 175935
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 337     gcgcgacggtggtcgccgccgggg 360
               ||||| ||||||||||||||||||
Sbjct: 4243819 gcgcgccggtggtcgccgccgggg 4243842
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>gb|DQ067603.1| Bovine viral diarrhea virus 1 isolate Ind S-1226 NS3 gene, partial
            cds
          Length = 1152

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 287  ctagaaggtccacttccagatctt 310
            |||||||||||||| |||||||||
Sbjct: 1075 ctagaaggtccactgccagatctt 1052
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                  
Query: 442    cggtgagcttcacccccttcttcttcgccggcgcgg 477
              ||||||||| | ||| | ||||||||||||||||||
Sbjct: 894369 cggtgagctacgcccacatcttcttcgccggcgcgg 894404
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>gb|AC129342.5| Rattus norvegicus  BAC CH230-229B21 (Children's Hospital Oakland Research
              Institute Rat (BN/SsNHsd/MCW) BAC library) complete
              sequence
          Length = 224257

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 118    actcctcccctccccccgcc 137
              ||||||||||||||||||||
Sbjct: 134478 actcctcccctccccccgcc 134459
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 350      cgccgccgggggcgaggtcg 369
                ||||||||||||||||||||
Sbjct: 33373420 cgccgccgggggcgaggtcg 33373401
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>gb|AC135507.2| Homo sapiens chromosome 3 clone RP11-802O23, complete sequence
          Length = 171175

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 122   ctcccctccccccgccaaat 141
             ||||||||||||||||||||
Sbjct: 65646 ctcccctccccccgccaaat 65627
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>dbj|AP004222.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1003B09
          Length = 155263

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 372   gcgtcggcgacggccgcgga 391
             ||||||||||||||||||||
Sbjct: 36967 gcgtcggcgacggccgcgga 36986
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>dbj|AP003563.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1168H06
          Length = 185600

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 372   gcgtcggcgacggccgcgga 391
             ||||||||||||||||||||
Sbjct: 12426 gcgtcggcgacggccgcgga 12445
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>gb|DQ163917.1| Bacteriophage F8, complete genome
          Length = 66015

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 372   gcgtcggcgacggccgcggacggctccg 399
             ||||| ||||||||| ||||||||||||
Sbjct: 30831 gcgtccgcgacggccccggacggctccg 30858
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>emb|AJ249131.1|HSA249131 Homo sapiens partiel mPR gene for progesterone membrane binding
           protein
          Length = 2310

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 119 ctcctcccctccccccgcca 138
           ||||||||||||||||||||
Sbjct: 853 ctcctcccctccccccgcca 872
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>emb|CT573229.8| Zebrafish DNA sequence from clone DKEY-11D7 in linkage group 1,
             complete sequence
          Length = 146843

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 116   tcactcctcccctccccccg 135
             ||||||||||||||||||||
Sbjct: 70333 tcactcctcccctccccccg 70352
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>dbj|AK062698.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-106-A11, full
           insert sequence
          Length = 856

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 350 cgccgccgggggcgaggtcg 369
           ||||||||||||||||||||
Sbjct: 370 cgccgccgggggcgaggtcg 351
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>gb|AY105871.1| Zea mays PCO090908 mRNA sequence
          Length = 1694

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 463 tcttcgccggcgcgggtgcc 482
           ||||||||||||||||||||
Sbjct: 253 tcttcgccggcgcgggtgcc 272
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>gb|AC004835.2|AC004835 Homo sapiens clone DJ0555N02, complete sequence
          Length = 121803

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 119   ctcctcccctccccccgcca 138
             ||||||||||||||||||||
Sbjct: 32792 ctcctcccctccccccgcca 32811
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>gb|L35850.1|BVDP125C Bovine viral diarrhea virus (strain New-York-1) p125 gene, partial
            cds
          Length = 4088

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 287  ctagaaggtccacttccagatctt 310
            |||||||||||||| |||||||||
Sbjct: 3843 ctagaaggtccactgccagatctt 3820
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>gb|AF072694.1|AF072694 Oryza sativa germin-like protein 7 (GER7) mRNA, complete cds
          Length = 856

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 350 cgccgccgggggcgaggtcg 369
           ||||||||||||||||||||
Sbjct: 355 cgccgccgggggcgaggtcg 336
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>gb|AC149062.3| Mus musculus BAC clone RP23-183E20 from 7, complete sequence
          Length = 229956

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 106    aaacctcacatcactcctcccctccccc 133
              ||||||||||||| ||||| ||||||||
Sbjct: 204242 aaacctcacatcaatcctcgcctccccc 204269
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>emb|AL365314.16| Mouse DNA sequence from clone RP23-106N23 on chromosome 1, complete
             sequence
          Length = 182054

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 114   catcactcctcccctccccc 133
             ||||||||||||||||||||
Sbjct: 35789 catcactcctcccctccccc 35808
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>emb|AL583889.8| Mouse DNA sequence from clone RP23-10K12 on chromosome 15, complete
             sequence
          Length = 236344

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 482   cggggagggcgcggccacct 501
             ||||||||||||||||||||
Sbjct: 32847 cggggagggcgcggccacct 32828
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>emb|AL583887.9| Mouse DNA sequence from clone RP23-121M7 on chromosome 15, complete
             sequence
          Length = 220050

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 482   cggggagggcgcggccacct 501
             ||||||||||||||||||||
Sbjct: 45158 cggggagggcgcggccacct 45177
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>gb|L13855.1|SH1UDNAG Pseudorabies virus uracil-DNA glycosylase gene, complete cds
          Length = 4100

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 375  tcggcgacggccgcggacgg 394
            ||||||||||||||||||||
Sbjct: 3737 tcggcgacggccgcggacgg 3756


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,308,968
Number of Sequences: 3902068
Number of extensions: 3308968
Number of successful extensions: 80614
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79473
Number of HSP's gapped (non-prelim): 1137
length of query: 542
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 519
effective length of database: 17,143,297,704
effective search space: 8897371508376
effective search space used: 8897371508376
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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