ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart31c12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ZO1_HUMAN (Q07157) Tight junction protein ZO-1 (Zonula occludens... 32 0.45
2ZO1_MOUSE (P39447) Tight junction protein ZO-1 (Zonula occludens... 30 2.2
3ATS19_HUMAN (Q8TE59) ADAMTS-19 precursor (EC 3.4.24.-) (A disint... 29 3.8
4PRP16_YEAST (P15938) Pre-mRNA-splicing factor ATP-dependent RNA ... 28 5.0
5MELB_ECOLI (P02921) Melibiose carrier protein (Thiomethylgalacto... 28 8.4
6MELB_SALTY (P30878) Melibiose carrier protein (Thiomethylgalacto... 28 8.4

>ZO1_HUMAN (Q07157) Tight junction protein ZO-1 (Zonula occludens 1 protein)|
           (Zona occludens 1 protein) (Tight junction protein 1)
          Length = 1748

 Score = 32.0 bits (71), Expect = 0.45
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 199 HRPVSIEESTFERNERLVSGIPNPKTRRPCYCEL 98
           H P ++EE T ERNE+    +P PK   P Y ++
Sbjct: 362 HTPKTVEEVTVERNEKQTPSLPEPK---PVYAQV 392



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>ZO1_MOUSE (P39447) Tight junction protein ZO-1 (Zonula occludens 1 protein)|
           (Zona occludens 1 protein) (Tight junction protein 1)
          Length = 1745

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 199 HRPVSIEESTFERNERLVSGIPNPKTRRPCYCEL 98
           H P ++EE T E+NE+    +P PK   P Y ++
Sbjct: 362 HPPKAVEEVTVEKNEKQTPTLPEPK---PVYAQV 392



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>ATS19_HUMAN (Q8TE59) ADAMTS-19 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase with thrombospondin motifs 19)
           (ADAM-TS 19) (ADAM-TS19)
          Length = 1207

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +1

Query: 124 FSGWECQKLSVH-SSQKYFLQWRRV 195
           F  W+CQ  SV  SS K+ LQW+ V
Sbjct: 692 FRDWQCQAYSVRTSSPKHILQWQAV 716



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>PRP16_YEAST (P15938) Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16|
            (EC 3.6.1.-)
          Length = 1071

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 16/62 (25%), Positives = 31/62 (50%)
 Frame = +1

Query: 34   PRRYKLRTAIAADRFT*KSAQTVHSSKGVLFSGWECQKLSVHSSQKYFLQWRRVDGNRNV 213
            P+  +    IA ++F    A++ H +   +F  W     S H   K+F+Q++ +   R++
Sbjct: 821  PKERQKEADIARNKFF--IAKSDHLTLLNVFEQWRANNFSSHWCNKHFVQYKSLVRARDI 878

Query: 214  RD 219
            RD
Sbjct: 879  RD 880



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>MELB_ECOLI (P02921) Melibiose carrier protein (Thiomethylgalactoside permease|
           II) (Melibiose permease) (Na+ (Li+)/melibiose symporter)
           (Melibiose transporter)
          Length = 469

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -1

Query: 91  HFFK*TCRLLLLCVAYNVWVVMW*LLSCPF 2
           H F+ T +++ +CV Y +W + + ++  PF
Sbjct: 94  HLFEGTTQIVFVCVTYILWGMTYTIMDIPF 123



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>MELB_SALTY (P30878) Melibiose carrier protein (Thiomethylgalactoside permease|
           II) (Melibiose permease) (Na+ (Li+)/melibiose symporter)
           (Melibiose transporter)
          Length = 476

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -1

Query: 91  HFFK*TCRLLLLCVAYNVWVVMW*LLSCPF 2
           H F+ T +++ +CV Y +W + + ++  PF
Sbjct: 98  HLFEGTAQVVFVCVTYILWGMTYTIMDIPF 127


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,616,625
Number of Sequences: 219361
Number of extensions: 559691
Number of successful extensions: 1058
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 80,573,946
effective HSP length: 48
effective length of database: 70,044,618
effective search space used: 1681070832
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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