ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart31c10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RBP1C_ARATH (P92985) Ran-binding protein 1 homolog c 44 4e-04
2RBP1B_ARATH (Q8RWG8) Ran-binding protein 1 homolog b 42 0.001
3RBP1A_ARATH (Q9LMK7) Ran-binding protein 1 homolog a (Ran-bindin... 41 0.002
4Y1079_METJA (Q58479) Hypothetical protein MJ1079 30 3.1
5YRB1_YEAST (P41920) Ran-specific GTPase-activating protein 1 (Ra... 29 9.0

>RBP1C_ARATH (P92985) Ran-binding protein 1 homolog c|
          Length = 219

 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 19/31 (61%), Positives = 23/31 (74%)
 Frame = -3

Query: 523 ELKEEMFAIRFGSVENCKKFKDLVDEIAEQQ 431
           ELK+E+F IRF S+ENCK F +   EIAE Q
Sbjct: 129 ELKDELFCIRFASIENCKTFMEKFTEIAESQ 159



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>RBP1B_ARATH (Q8RWG8) Ran-binding protein 1 homolog b|
          Length = 217

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 18/31 (58%), Positives = 22/31 (70%)
 Frame = -3

Query: 523 ELKEEMFAIRFGSVENCKKFKDLVDEIAEQQ 431
           ELK+E+F IRF SVENCK F     E+AE +
Sbjct: 132 ELKDELFCIRFASVENCKAFMQKFKEVAESE 162



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>RBP1A_ARATH (Q9LMK7) Ran-binding protein 1 homolog a (Ran-binding protein|
           siRanBP)
          Length = 228

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 17/31 (54%), Positives = 22/31 (70%)
 Frame = -3

Query: 523 ELKEEMFAIRFGSVENCKKFKDLVDEIAEQQ 431
           ELK+E+F IRF S+ENCK F     E+AE +
Sbjct: 130 ELKDELFCIRFASIENCKTFMQKFKEVAESE 160



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>Y1079_METJA (Q58479) Hypothetical protein MJ1079|
          Length = 397

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = -2

Query: 269 YFIICSRSIAILELANCQVGVIRFILWSEFIFLSQIFVVLFCGMDAWVG 123
           + I+ S +IAI+ L N    ++ FI    F FLS +F ++FC +   +G
Sbjct: 302 FSILISSTIAIIILLNLSKYILLFIRKVNFKFLS-LFFIIFCSLVVIIG 349



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>YRB1_YEAST (P41920) Ran-specific GTPase-activating protein 1 (Ran-binding|
           protein 1) (RANBP1) (Perinuclear array-localized
           protein)
          Length = 201

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -3

Query: 505 FAIRFGSVENCKKFKDLVDEIAE 437
           FAIRFGS EN  KFK+  ++  E
Sbjct: 174 FAIRFGSKENADKFKEEFEKAQE 196


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,691,141
Number of Sequences: 219361
Number of extensions: 1399268
Number of successful extensions: 3383
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3381
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 3970331829
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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