ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart31b11 |
|---|---|
| Clone Library Name | barley_pub |
>GALM_RAT (Q66HG4) Aldose 1-epimerase (EC 5.1.3.3) (Galactose mutarotase)| Length = 342 Score = 97.4 bits (241), Expect = 1e-20 Identities = 44/76 (57%), Positives = 56/76 (73%), Gaps = 1/76 (1%) Frame = -3 Query: 408 SGRALELWANQPAMQLYTGNFLNHT-KGKGGKVYEQYGGFCLETQAYPDAVNHPEFPSVT 232 SGR LE++ QP +Q YTGNFL+ T KGK G+VY ++ GFCLETQ +PDAVN P+FP + Sbjct: 265 SGRILEVYTTQPGVQFYTGNFLDGTLKGKSGEVYPKHSGFCLETQNWPDAVNQPQFPPIL 324 Query: 231 VRPGQVYKHDMLLKFS 184 +RPG+ Y H KFS Sbjct: 325 LRPGEEYNHTTWFKFS 340
>GALM_HUMAN (Q96C23) Aldose 1-epimerase (EC 5.1.3.3) (Galactose mutarotase)| (BLOCK25 protein) Length = 342 Score = 96.3 bits (238), Expect = 3e-20 Identities = 45/76 (59%), Positives = 54/76 (71%), Gaps = 1/76 (1%) Frame = -3 Query: 408 SGRALELWANQPAMQLYTGNFLNHT-KGKGGKVYEQYGGFCLETQAYPDAVNHPEFPSVT 232 SGR LE++ QP +Q YTGNFL+ T KGK G VY ++ GFCLETQ +PDAVN P FP V Sbjct: 265 SGRVLEVYTTQPGVQFYTGNFLDGTLKGKNGAVYPKHSGFCLETQNWPDAVNQPRFPPVL 324 Query: 231 VRPGQVYKHDMLLKFS 184 +RPG+ Y H KFS Sbjct: 325 LRPGEEYDHTTWFKFS 340
>GALM_PONPY (Q5R8U1) Aldose 1-epimerase (EC 5.1.3.3) (Galactose mutarotase)| Length = 342 Score = 94.0 bits (232), Expect = 2e-19 Identities = 44/76 (57%), Positives = 53/76 (69%), Gaps = 1/76 (1%) Frame = -3 Query: 408 SGRALELWANQPAMQLYTGNFLNHT-KGKGGKVYEQYGGFCLETQAYPDAVNHPEFPSVT 232 SGR LE++ QP +Q Y GNFL+ T KGK G VY ++ GFCLETQ +PDAVN P FP V Sbjct: 265 SGRVLEVYTTQPGVQFYMGNFLDGTLKGKNGAVYPKHSGFCLETQNWPDAVNQPRFPPVL 324 Query: 231 VRPGQVYKHDMLLKFS 184 +RPG+ Y H KFS Sbjct: 325 LRPGEEYDHTTWFKFS 340
>GALM_MOUSE (Q8K157) Aldose 1-epimerase (EC 5.1.3.3) (Galactose mutarotase)| Length = 342 Score = 93.6 bits (231), Expect = 2e-19 Identities = 44/83 (53%), Positives = 55/83 (66%), Gaps = 1/83 (1%) Frame = -3 Query: 429 AVARDGKSGRALELWANQPAMQLYTGNFLNHT-KGKGGKVYEQYGGFCLETQAYPDAVNH 253 A R SGR LE++ QP +Q YTGNFL+ T KGK G VY ++ G CLETQ +PD+VN Sbjct: 258 ARVRHAASGRILEVYTTQPGVQFYTGNFLDGTLKGKNGAVYPKHSGLCLETQNWPDSVNQ 317 Query: 252 PEFPSVTVRPGQVYKHDMLLKFS 184 P+FP +RPG+ Y H KFS Sbjct: 318 PQFPPALLRPGEEYNHTTWFKFS 340
>GALM_BOVIN (Q5EA79) Aldose 1-epimerase (EC 5.1.3.3) (Galactose mutarotase)| Length = 342 Score = 93.6 bits (231), Expect = 2e-19 Identities = 43/76 (56%), Positives = 54/76 (71%), Gaps = 1/76 (1%) Frame = -3 Query: 408 SGRALELWANQPAMQLYTGNFLNHT-KGKGGKVYEQYGGFCLETQAYPDAVNHPEFPSVT 232 SGR LE++ QP +Q YTGNFL+ T KGK G Y ++ GFCLETQ++PDAVN P FP V Sbjct: 265 SGRVLEVYTTQPGVQFYTGNFLDGTLKGKSGAGYPKHSGFCLETQSWPDAVNQPHFPPVL 324 Query: 231 VRPGQVYKHDMLLKFS 184 ++PG+ Y H KFS Sbjct: 325 LKPGEEYDHTTWFKFS 340
>GALM_PIG (Q9GKX6) Aldose 1-epimerase (EC 5.1.3.3) (Galactose mutarotase)| Length = 342 Score = 90.1 bits (222), Expect = 2e-18 Identities = 42/76 (55%), Positives = 53/76 (69%), Gaps = 1/76 (1%) Frame = -3 Query: 408 SGRALELWANQPAMQLYTGNFLNHT-KGKGGKVYEQYGGFCLETQAYPDAVNHPEFPSVT 232 SGR LE++ QP +Q YTGNFL+ T KGK G VY ++ GFCLETQ +P+AVN P FP V Sbjct: 265 SGRVLEVYTTQPGIQFYTGNFLDGTLKGKTGAVYPKHSGFCLETQNWPNAVNQPHFPPVL 324 Query: 231 VRPGQVYKHDMLLKFS 184 ++PG+ Y H FS Sbjct: 325 LKPGEEYNHTTWFVFS 340
>GALM_ACICA (P05149) Aldose 1-epimerase precursor (EC 5.1.3.3) (Mutarotase)| Length = 381 Score = 62.4 bits (150), Expect = 5e-10 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 1/82 (1%) Frame = -3 Query: 429 AVARDGKSGRALELWANQPAMQLYTGN-FLNHTKGKGGKVYEQYGGFCLETQAYPDAVNH 253 A+ D KS R +++ +P++Q+YT + L + G G +Y Q LETQ +PD+ N Sbjct: 296 AIVVDPKSKRTMQVLTTEPSVQMYTADHLLGNIVGANGVLYRQADALALETQHFPDSPNQ 355 Query: 252 PEFPSVTVRPGQVYKHDMLLKF 187 P FPS + P Q Y + KF Sbjct: 356 PTFPSTRLNPNQTYNSVTVFKF 377
>GALM_SHIFL (P0A9C4) Aldose 1-epimerase (EC 5.1.3.3) (Mutarotase)| Length = 346 Score = 58.2 bits (139), Expect = 9e-09 Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 2/64 (3%) Frame = -3 Query: 396 LELWANQPAMQLYTGNFLNHTKGKGGKVYEQYGGFCLETQAYPDAVNHPEF--PSVTVRP 223 L+++ PA+Q Y+GNFL T +G + Y + G LE++ PD+ NHPE+ P +RP Sbjct: 272 LKVYTTAPALQFYSGNFLGGTPSRGTEPYADWQGLALESEFLPDSPNHPEWPQPDCFLRP 331 Query: 222 GQVY 211 G+ Y Sbjct: 332 GEEY 335
>GALM_ECOLI (P0A9C3) Aldose 1-epimerase (EC 5.1.3.3) (Mutarotase)| Length = 346 Score = 58.2 bits (139), Expect = 9e-09 Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 2/64 (3%) Frame = -3 Query: 396 LELWANQPAMQLYTGNFLNHTKGKGGKVYEQYGGFCLETQAYPDAVNHPEF--PSVTVRP 223 L+++ PA+Q Y+GNFL T +G + Y + G LE++ PD+ NHPE+ P +RP Sbjct: 272 LKVYTTAPALQFYSGNFLGGTPSRGTEPYADWQGLALESEFLPDSPNHPEWPQPDCFLRP 331 Query: 222 GQVY 211 G+ Y Sbjct: 332 GEEY 335
>GALM_HAEIN (P31765) Aldose 1-epimerase (EC 5.1.3.3) (Mutarotase)| Length = 340 Score = 56.6 bits (135), Expect = 3e-08 Identities = 24/52 (46%), Positives = 35/52 (67%) Frame = -3 Query: 399 ALELWANQPAMQLYTGNFLNHTKGKGGKVYEQYGGFCLETQAYPDAVNHPEF 244 +LE+ +Q A+Q+YTGN+L T + G++Y + G LETQ PD NHPE+ Sbjct: 267 SLEVRTSQAALQVYTGNYLAGTPTRNGELYADFSGIALETQCLPDTPNHPEW 318
>GAL10_KLULA (P09609) GAL10 bifunctional protein [Includes: UDP-glucose| 4-epimerase (EC 5.1.3.2) (Galactowaldenase); Aldose 1-epimerase (EC 5.1.3.3) (Mutarotase)] Length = 688 Score = 47.0 bits (110), Expect = 2e-05 Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Frame = -3 Query: 396 LELWANQPAMQLYTGNFLNHTKGKGGKVYEQYGGFCLETQAYPDAVNHPEFPSVTVRP-G 220 +E+ +P Q+YTG++++ K K YE G C E Y DAVN+PE+ S V P G Sbjct: 620 VEVATTEPTFQVYTGDYVD-VKDK----YENRAGICCEPGRYIDAVNNPEWKSSVVLPAG 674 Query: 219 QVYKHDMLLKF 187 + Y H + F Sbjct: 675 ETYGHKLSYTF 685
>GAL10_YEAST (P04397) GAL10 bifunctional protein [Includes: UDP-glucose| 4-epimerase (EC 5.1.3.2) (Galactowaldenase); Aldose 1-epimerase (EC 5.1.3.3) (Mutarotase)] Length = 699 Score = 42.0 bits (97), Expect = 7e-04 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 1/76 (1%) Frame = -3 Query: 408 SGRALELWANQPAMQLYTGNFLNHTKGKGGKVYEQYGGFCLETQAYPDAVNHPEFPS-VT 232 S LE+ + +P Q YTG+FL+ YE GF +E Y DA+N + VT Sbjct: 631 SNITLEVLSTEPTYQFYTGDFLS-------AGYEARQGFAIEPGRYIDAINQENWKDCVT 683 Query: 231 VRPGQVYKHDMLLKFS 184 ++ G+ Y ++ +FS Sbjct: 684 LKNGETYGSKIVYRFS 699
>GALM_STRTR (P21955) Aldose 1-epimerase (EC 5.1.3.3) (Mutarotase)| Length = 348 Score = 40.4 bits (93), Expect = 0.002 Identities = 20/84 (23%), Positives = 45/84 (53%), Gaps = 3/84 (3%) Frame = -3 Query: 441 MRKVAVARDGKSGRALELWANQPAMQLYTGNFLN---HTKGKGGKVYEQYGGFCLETQAY 271 +++VA+ D +SG +E+++N+ + ++T + + + GK+ ++ +E Q Sbjct: 256 VKEVAILHDKESGDGIEIFSNRNGLVIFTMDDIEDNIYFARDKGKMAKRREAIAMEAQTL 315 Query: 270 PDAVNHPEFPSVTVRPGQVYKHDM 199 PDAVNH F + + G +++ Sbjct: 316 PDAVNHKGFGDIILDKGHSVNYEI 339
>GAL10_SCHPO (Q9HDU3) GAL10 bifunctional protein [Includes: UDP-glucose| 4-epimerase (EC 5.1.3.2) (Galactowaldenase); Aldose 1-epimerase (EC 5.1.3.3) (Mutarotase)] Length = 713 Score = 35.4 bits (80), Expect = 0.066 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%) Frame = -3 Query: 378 QPAMQLYTGNFLNHTKGKGGKVYEQYGGFCLETQAYPDAVNHPEF-PSVTVRPGQVY 211 +PA QLYTG+ G ++ GFC+ET + +A+N+ ++ V +R G+VY Sbjct: 632 EPAFQLYTGD------GNDICEFQSRSGFCVETGRFINALNNEKWSKQVILRKGEVY 682
>GAL10_PACTA (P40801) GAL10 bifunctional protein [Includes: UDP-glucose| 4-epimerase (EC 5.1.3.2) (Galactowaldenase); Aldose 1-epimerase (EC 5.1.3.3) (Mutarotase)] Length = 689 Score = 33.9 bits (76), Expect = 0.19 Identities = 24/85 (28%), Positives = 41/85 (48%) Frame = -3 Query: 441 MRKVAVARDGKSGRALELWANQPAMQLYTGNFLNHTKGKGGKVYEQYGGFCLETQAYPDA 262 +R VA A K+ A +PA Q YTG+ ++ V+ + GFCLE Y Sbjct: 611 LRVVATATHPKTRIAFTTLTTEPAFQFYTGDGVD-----VAGVFTKRSGFCLEASRY--- 662 Query: 261 VNHPEFPSVTVRPGQVYKHDMLLKF 187 + +P++ + + G+VY + +F Sbjct: 663 IYNPKW-FIPLNKGEVYGSYTIYRF 686
>CSKI1_HUMAN (Q8WXD9) Caskin-1 (CASK-interacting protein 1)| Length = 1431 Score = 28.9 bits (63), Expect = 6.2 Identities = 12/33 (36%), Positives = 19/33 (57%) Frame = -3 Query: 438 RKVAVARDGKSGRALELWANQPAMQLYTGNFLN 340 +K+ A +GKS A+ W +QLY NF++ Sbjct: 463 KKLEPASEGKSSEAVSQWLTAFQLQLYAPNFIS 495
>Y539_PYRKO (Q5JF28) Putative HTH-type transcriptional regulatory protein| TK0539 Length = 318 Score = 28.5 bits (62), Expect = 8.1 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = -3 Query: 321 GKVYEQYGGFCLETQAYPDAVNHPEFPSVTVRPGQVY 211 G VYE++G + L + DA+ + E P+V G +Y Sbjct: 87 GVVYERFGIYALRPETLYDALLNNELPAVFAERGGLY 123
>CI042_RAT (Q6AYT4) Protein C9orf42 homolog| Length = 286 Score = 28.5 bits (62), Expect = 8.1 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 3/42 (7%) Frame = +3 Query: 54 HGITASSPTNRATSKSRANTSTTHQPMVVLLLPC---RSHSS 170 HG++ SSP +A + S STT LLLP R HSS Sbjct: 41 HGLSDSSPVFQAEAPSARRNSTTFPSRHGLLLPASPVRMHSS 82
>SELD1_EUBAC (Q9L4E1) Selenide, water dikinase 1 (EC 2.7.9.3) (Selenophosphate| synthetase 1) (Selenium donor protein 1) Length = 347 Score = 28.5 bits (62), Expect = 8.1 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 4/23 (17%) Frame = +2 Query: 104 SEHI----YDPSTNGGTIATVPQ 160 SEHI YDP T+GG + +VPQ Sbjct: 290 SEHIMDILYDPQTSGGLLVSVPQ 312
>CI042_MOUSE (Q9DB52) Protein C9orf42 homolog| Length = 284 Score = 28.5 bits (62), Expect = 8.1 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 3/42 (7%) Frame = +3 Query: 54 HGITASSPTNRATSKSRANTSTTHQPMVVLLLPC---RSHSS 170 HG++ SSP +A + S STT LLLP R HSS Sbjct: 39 HGLSDSSPVFQAEAPSARRNSTTFPSRHGLLLPASPVRMHSS 80 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,594,507 Number of Sequences: 219361 Number of extensions: 1277911 Number of successful extensions: 3737 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 3620 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3727 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2735358828 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
