ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart31b10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GSTU6_ORYSA (Q06398) Probable glutathione S-transferase GSTU6 (E... 70 4e-12
2GSTX2_MAIZE (P50472) Probable glutathione S-transferase BZ2 (EC ... 49 1e-05
3OL287_RAT (P23267) Olfactory receptor 287 (Olfactory receptor-li... 31 2.1
4CRF1_YARLI (P45815) Copper resistance protein CRF1 31 2.7
5GSTX4_TOBAC (Q03666) Probable glutathione S-transferase (EC 2.5.... 30 6.0
6GSTXC_TOBAC (P49332) Probable glutathione S-transferase parC (EC... 29 7.8

>GSTU6_ORYSA (Q06398) Probable glutathione S-transferase GSTU6 (EC 2.5.1.18) (28|
           kDa cold-induced protein)
          Length = 236

 Score = 70.1 bits (170), Expect = 4e-12
 Identities = 35/86 (40%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
 Frame = -1

Query: 558 AAVEMLEGALRECSKGEGYFGGETXXXXXXXXXXXXXXLNATEVMSGTKIFDPVKTPLLA 379
           AA+E LEGA  ECSKG+ +FGG+                 A + + G ++ DP +TP LA
Sbjct: 138 AALETLEGAFGECSKGKPFFGGDGVGFVDVVLGGYLGWFTAIDKLIGRRLIDPARTPALA 197

Query: 378 AWMDRFSELDAAKAALP-EVDRVVEF 304
           AW +RF   DAAK  +P + D+++EF
Sbjct: 198 AWEERFRATDAAKGVVPDDADKLLEF 223



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>GSTX2_MAIZE (P50472) Probable glutathione S-transferase BZ2 (EC 2.5.1.18)|
           (Protein bronze-2)
          Length = 236

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
 Frame = -1

Query: 558 AAVEMLEGALRECSKGEGYFGGETXXXXXXXXXXXXX--XLNATEVMSGTKIFDPVKTPL 385
           AA+ +LE A ++ S G  +F G                  L A E + G  + D   TPL
Sbjct: 135 AALSLLEEAFKDRSNGRAFFSGGDAAPGLLDLALGCFLPALRACERLHGLSLIDASATPL 194

Query: 384 LAAWMDRFSELDAAKAALPEVDRVVEF 304
           L  W  RF+   AAK  LP+ ++VV+F
Sbjct: 195 LDGWSQRFAAHPAAKRVLPDTEKVVQF 221



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>OL287_RAT (P23267) Olfactory receptor 287 (Olfactory receptor-like protein|
           F6)
          Length = 311

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 11/122 (9%)
 Frame = +1

Query: 115 VQFYTRTSTKSKQIFWDRGNIIN*SLFERNMHFSYSMGLTFL*YLLVVRSNNSGSSLCLP 294
           + F T    K+   F  RG +I+ +     M+F +S+G T   +LL V + +   ++CLP
Sbjct: 74  IWFTTACVPKTLATFAPRGGVISLAGCATQMYFVFSLGCTEY-FLLAVMAYDRYLAICLP 132

Query: 295 L-HGKFDHP-------INLWQRRLRSIELAKAIHPCRQERSLNRIKDLGSR---HHFCSV 441
           L +G    P       +  W     +I +   +        + R+   GSR   H FC +
Sbjct: 133 LRYGGIMTPGLAMRLALGSWLCGFSAITVPATL--------IARLSFCGSRVINHFFCDI 184

Query: 442 QP 447
            P
Sbjct: 185 SP 186



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>CRF1_YARLI (P45815) Copper resistance protein CRF1|
          Length = 411

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 267 QQRQQLVPASSWQIRPPYQPLATPPSQHRAR*SDPSMPPRAES 395
           QQ Q   P  +  +  P  P+ATP   HRA  + PS+ P+ +S
Sbjct: 146 QQPQMPTPVHTTNVTTP--PVATPTHSHRALSTTPSLSPQPQS 186



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>GSTX4_TOBAC (Q03666) Probable glutathione S-transferase (EC 2.5.1.18)|
           (Auxin-induced protein PCNT107)
          Length = 221

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 21/83 (25%), Positives = 35/83 (42%)
 Frame = -1

Query: 552 VEMLEGALRECSKGEGYFGGETXXXXXXXXXXXXXXLNATEVMSGTKIFDPVKTPLLAAW 373
           +++LEGAL +    + YFGGE+                A E           + P   AW
Sbjct: 134 LKVLEGALGD----KPYFGGESFGFVDIALIGYYSWFYAYETFGNFST--EAECPKFVAW 187

Query: 372 MDRFSELDAAKAALPEVDRVVEF 304
             R  + ++   +LP+  +V+EF
Sbjct: 188 AKRCMQRESVAKSLPDQPKVLEF 210



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>GSTXC_TOBAC (P49332) Probable glutathione S-transferase parC (EC 2.5.1.18)|
           (Auxin-regulated protein parC)
          Length = 221

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 21/83 (25%), Positives = 34/83 (40%)
 Frame = -1

Query: 552 VEMLEGALRECSKGEGYFGGETXXXXXXXXXXXXXXLNATEVMSGTKIFDPVKTPLLAAW 373
           +++LEGAL +      YFGGE+                A E           + P   AW
Sbjct: 134 LKVLEGALGD----RPYFGGESFGFVDIALIGFYSWFYAYETFGNFST--EAECPKFVAW 187

Query: 372 MDRFSELDAAKAALPEVDRVVEF 304
             R  + ++   +LP+  +V+EF
Sbjct: 188 AKRCMQRESVAKSLPDQPKVLEF 210


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,163,571
Number of Sequences: 219361
Number of extensions: 1324710
Number of successful extensions: 3143
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3138
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4528412720
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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