ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart31b07 |
|---|---|
| Clone Library Name | barley_pub |
>COBA2_HUMAN (P13942) Collagen alpha-2(XI) chain precursor| Length = 1736 Score = 29.6 bits (65), Expect = 1.9 Identities = 16/36 (44%), Positives = 18/36 (50%) Frame = +3 Query: 150 GTIFPPFASGKPTSREP*PAKTAPPPRSGLPDGDGA 257 G I PP G P P + PP R+GLP DGA Sbjct: 408 GLIGPPGIQGNPGPVGD-PGERGPPGRAGLPGSDGA 442
>JHD1A_XENTR (Q5U263) JmjC domain-containing histone demethylation protein 1A| (EC 1.14.11.-) (F-box/LRR-repeat protein 11) (F-box and leucine-rich repeat protein 11) Length = 1146 Score = 28.9 bits (63), Expect = 3.2 Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 4/37 (10%) Frame = +3 Query: 180 KPTSREP*PAKTAPPPRSGLPDG----DGAHRKRVGC 278 +P SR TAPP SG P G GA R+RV C Sbjct: 560 RPASRH----STAPPRTSGTPSGTTASSGARRRRVRC 592
>3BP2_MOUSE (Q06649) SH3 domain-binding protein 2 (3BP-2)| Length = 559 Score = 28.5 bits (62), Expect = 4.2 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = +3 Query: 186 TSREP*PAKTAPPPRSGLPDGDGA 257 TS+ P P PPP+ GLPD A Sbjct: 227 TSKSPSPLLPPPPPKRGLPDTGSA 250
>E2F5_MOUSE (Q61502) Transcription factor E2F5 (E2F-5)| Length = 335 Score = 28.5 bits (62), Expect = 4.2 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%) Frame = +3 Query: 171 ASGKPTSR-EP*PAKTAPPPRSGLPDGDGAHRKRVGCYQH 287 A+ +PTS +P P A PP G P + R R G +H Sbjct: 2 AAAEPTSSAQPTPQAQAQPPPHGAPSSQPSRRSRGGSSRH 41
>CO5A1_MOUSE (O88207) Collagen alpha-1(V) chain precursor| Length = 1838 Score = 28.5 bits (62), Expect = 4.2 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = +3 Query: 162 PPFASGKPTSREP*PAKTAPPPRSGLPDGDG 254 PP +G PT + P + PP R GLP DG Sbjct: 482 PPGTTG-PTGQMGDPGERGPPGRPGLPGADG 511
>ODP2_PSEAE (Q59638) Dihydrolipoyllysine-residue acetyltransferase component of| pyruvate dehydrogenase complex (EC 2.3.1.12) (E2) (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex) Length = 547 Score = 28.5 bits (62), Expect = 4.2 Identities = 14/31 (45%), Positives = 15/31 (48%) Frame = +3 Query: 165 PFASGKPTSREP*PAKTAPPPRSGLPDGDGA 257 P A KP + P PAK P G P DGA Sbjct: 215 PAAEQKPAAAAPAPAKADTPAPVGAPSRDGA 245
>CO5A1_RAT (Q9JI03) Collagen alpha-1(V) chain precursor| Length = 1840 Score = 28.5 bits (62), Expect = 4.2 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = +3 Query: 162 PPFASGKPTSREP*PAKTAPPPRSGLPDGDG 254 PP +G PT + P + PP R GLP DG Sbjct: 484 PPGTTG-PTGQMGDPGERGPPGRPGLPGADG 513
>CO5A1_CRILO (Q60467) Collagen alpha-1(V) chain precursor| Length = 1840 Score = 28.5 bits (62), Expect = 4.2 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = +3 Query: 162 PPFASGKPTSREP*PAKTAPPPRSGLPDGDG 254 PP +G PT + P + PP R GLP DG Sbjct: 484 PPGTTG-PTGQVGDPGERGPPGRPGLPGADG 513
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 28.1 bits (61), Expect = 5.5 Identities = 12/19 (63%), Positives = 13/19 (68%) Frame = +3 Query: 186 TSREP*PAKTAPPPRSGLP 242 +SR P P K PPPRSG P Sbjct: 139 SSRGPLPVKRGPPPRSGGP 157
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 28.1 bits (61), Expect = 5.5 Identities = 12/19 (63%), Positives = 13/19 (68%) Frame = +3 Query: 186 TSREP*PAKTAPPPRSGLP 242 +SR P P K PPPRSG P Sbjct: 139 SSRGPLPVKRGPPPRSGGP 157
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 28.1 bits (61), Expect = 5.5 Identities = 12/19 (63%), Positives = 13/19 (68%) Frame = +3 Query: 186 TSREP*PAKTAPPPRSGLP 242 +SR P P K PPPRSG P Sbjct: 142 SSRGPLPVKRGPPPRSGGP 160
>RDRP_PAV (Q9J7Z2) RNA-directed RNA polymerase (EC 2.7.7.48) (RdRp) (RNA| replicase) (Protein A) Length = 973 Score = 28.1 bits (61), Expect = 5.5 Identities = 17/63 (26%), Positives = 29/63 (46%) Frame = +2 Query: 2 KQKGNRGIIIHQATAEQGDSSSHHSQFHMEKKGWSSVNVITIHYIKQNKGYYFSPFREWQ 181 KQ G R Q+ A+ G S +S+F W NV+ Y++ K + + F+ W Sbjct: 546 KQVGRR----LQSIAKHGTLESDYSRFDGSISEWLQKNVVKAAYMRFFKEHQRTEFQSWF 601 Query: 182 ANI 190 + + Sbjct: 602 SKV 604
>PRB3_HUMAN (Q04118) Basic salivary proline-rich protein 3 precursor (Parotid| salivary glycoprotein G1) (Proline-rich protein G1) Length = 309 Score = 28.1 bits (61), Expect = 5.5 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%) Frame = +3 Query: 162 PPFASGKPTSREP*PAKTA--PPPRSGLPDG 248 P SGKP R P + PPPR G P+G Sbjct: 29 PSVISGKPEGRPPQGGNQSQGPPPRPGKPEG 59
>COBA1_BOVIN (Q28083) Collagen alpha-1(XI) chain precursor (Fragment)| Length = 911 Score = 28.1 bits (61), Expect = 5.5 Identities = 15/35 (42%), Positives = 17/35 (48%) Frame = +3 Query: 150 GTIFPPFASGKPTSREP*PAKTAPPPRSGLPDGDG 254 G + PP G PT P + PP R GLP DG Sbjct: 218 GLMGPPGLQG-PTGPPGDPGERGPPGRPGLPGADG 251
>POLG_TUMVQ (Q02597) Genome polyprotein [Contains: P1 proteinase (N-terminal| protein); Helper component proteinase (EC 3.4.22.45) (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2 (6K2); Viral ge Length = 3163 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = -2 Query: 206 WLGFSRCWLATRERGKNSTPYSVL 135 W GF RC+LA R + T YS L Sbjct: 370 WKGFDRCFLAYRSDNREHTCYSGL 393
>CO5A1_HUMAN (P20908) Collagen alpha-1(V) chain precursor| Length = 1838 Score = 27.7 bits (60), Expect = 7.2 Identities = 14/31 (45%), Positives = 16/31 (51%) Frame = +3 Query: 162 PPFASGKPTSREP*PAKTAPPPRSGLPDGDG 254 PP G PT + P + PP R GLP DG Sbjct: 482 PPGTMG-PTGQVGDPGERGPPGRPGLPGADG 511
>POLG_TUMVJ (P89509) Genome polyprotein [Contains: P1 proteinase (N-terminal| protein); Helper component proteinase (EC 3.4.22.45) (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2 (6K2); Viral ge Length = 3164 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = -2 Query: 206 WLGFSRCWLATRERGKNSTPYSVL 135 W GF RC+LA R + T YS L Sbjct: 370 WKGFDRCFLAYRSDNREHTCYSGL 393
>RSP5_CAEEL (Q10021) Probable splicing factor, arginine/serine-rich 5| (RNA-binding protein srp-3) (CeSC35-2) Length = 208 Score = 27.7 bits (60), Expect = 7.2 Identities = 14/27 (51%), Positives = 15/27 (55%) Frame = +3 Query: 189 SREP*PAKTAPPPRSGLPDGDGAHRKR 269 SR P PAK RSG P +G RKR Sbjct: 154 SRSPLPAKDRSRTRSGSPPKNGGDRKR 180
>CITE4_HUMAN (Q96RK1) Cbp/p300-interacting transactivator 4 (MSG1-related| protein 2) (MRG-2) Length = 184 Score = 27.3 bits (59), Expect = 9.4 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = +3 Query: 162 PPFASGKPTSREP*PAKTAPPP 227 PP A G P +P P+ APPP Sbjct: 103 PPNAPGGPPGPQPAPSAAAPPP 124
>CVRA_VIBCH (Q9KNM9) Cell volume regulation protein A homolog| Length = 581 Score = 27.3 bits (59), Expect = 9.4 Identities = 16/54 (29%), Positives = 25/54 (46%) Frame = +3 Query: 12 VTGVLLFIRPQLSRGIQARIIHNFTWKKKDGHRLMLSQYIT*NRIRGTIFPPFA 173 +TG+LL RP SR ++ TW + G L+L +T + + P A Sbjct: 252 LTGLLLGNRPTRSRHAILNVLDGMTWLAQIGMFLVLGLLVTPSELMEIALPGLA 305
>3BP2_HUMAN (P78314) SH3 domain-binding protein 2 (3BP-2)| Length = 561 Score = 27.3 bits (59), Expect = 9.4 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = +3 Query: 186 TSREP*PAKTAPPPRSGLPD 245 TS+ P P PPP+ GLPD Sbjct: 227 TSKGPGPLLPPPPPKHGLPD 246
>SF3A2_HUMAN (Q15428) Splicing factor 3A subunit 2 (Spliceosome-associated| protein 62) (SAP 62) (SF3a66) Length = 464 Score = 27.3 bits (59), Expect = 9.4 Identities = 13/27 (48%), Positives = 14/27 (51%) Frame = +3 Query: 162 PPFASGKPTSREP*PAKTAPPPRSGLP 242 PP +G P R P P PPP GLP Sbjct: 235 PPLMNGLPP-RPPLPESLPPPPPGGLP 260
>COBA1_HUMAN (P12107) Collagen alpha-1(XI) chain precursor| Length = 1806 Score = 27.3 bits (59), Expect = 9.4 Identities = 15/35 (42%), Positives = 16/35 (45%) Frame = +3 Query: 150 GTIFPPFASGKPTSREP*PAKTAPPPRSGLPDGDG 254 G + PP G PT P PP R GLP DG Sbjct: 451 GIMGPPGLQG-PTGPPGDPGDRGPPGRPGLPGADG 484
>AACT_PONPY (Q5R536) Alpha-1-antichymotrypsin precursor (ACT)| Length = 423 Score = 27.3 bits (59), Expect = 9.4 Identities = 8/24 (33%), Positives = 18/24 (75%) Frame = +2 Query: 65 SHHSQFHMEKKGWSSVNVITIHYI 136 +H S+F++ KK W V ++++H++ Sbjct: 226 THQSRFYLSKKKWVMVPMMSLHHL 249
>AACT_HUMAN (P01011) Alpha-1-antichymotrypsin precursor (ACT) [Contains:| Alpha-1-antichymotrypsin His-Pro-less] Length = 423 Score = 27.3 bits (59), Expect = 9.4 Identities = 8/24 (33%), Positives = 18/24 (75%) Frame = +2 Query: 65 SHHSQFHMEKKGWSSVNVITIHYI 136 +H S+F++ KK W V ++++H++ Sbjct: 226 THQSRFYLSKKKWVMVPMMSLHHL 249 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,585,088 Number of Sequences: 219361 Number of extensions: 777505 Number of successful extensions: 2468 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 2289 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2461 length of database: 80,573,946 effective HSP length: 94 effective length of database: 59,954,012 effective search space used: 1438896288 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
