Clone Information

BLAST Search Result

Clone Name	rbart31b06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	VTI13_ARATH (Q9LVP9) Vesicle transport v-SNARE 13 (AtVTI13) (Ves...	157	2e-38
2	VTI11_ARATH (Q9SEL6) Vesicle transport v-SNARE 11 (AtVTI11) (Ves...	156	3e-38
3	VTI12_ARATH (Q9SEL5) Vesicle transport v-SNARE 12 (AtVTI12) (Ves...	146	3e-35
4	VTI1_SCHPO (P78768) Vesicle transport v-SNARE protein vti1	80	4e-15
5	VTI1_YEAST (Q04338) t-SNARE VTI1 (Qb-SNARE VTI1) (Vesicle transp...	72	8e-13
6	VTI1B_MOUSE (O88384) Vesicle transport through interaction with ...	69	9e-12
7	VTI1B_HUMAN (Q9UEU0) Vesicle transport through interaction with ...	67	4e-11
8	VTI1A_MOUSE (O89116) Vesicle transport through interaction with ...	66	6e-11
9	VTI1A_RAT (Q9JI51) Vesicle transport through interaction with t-...	61	2e-09
10	VTI1A_HUMAN (Q96AJ9) Vesicle transport through interaction with ...	57	5e-08
11	MEM11_ARATH (Q9SJL6) Membrin 11 (AtMEMB11) (Golgi SNAP receptor ...	43	5e-04
12	MEM12_ARATH (Q9FK28) Membrin 12 (AtMEMB12) (Golgi SNAP receptor ...	43	7e-04
13	GOSR2_DROME (Q9VRL2) Probable Golgi SNAP receptor complex member 2	40	0.006
14	GOSR1_RAT (Q62931) Golgi SNAP receptor complex member 1 (28 kDa ...	37	0.049
15	GOSR1_MOUSE (O88630) Golgi SNAP receptor complex member 1 (28 kD...	37	0.049
16	GOSR1_HUMAN (O95249) Golgi SNAP receptor complex member 1 (28 kD...	37	0.049
17	GOSR1_CRIGR (O08522) Golgi SNAP receptor complex member 1 (28 kD...	37	0.049
18	GOSR1_PONPY (Q5RBL6) Golgi SNAP receptor complex member 1	37	0.049
19	SPTA1_MOUSE (P08032) Spectrin alpha chain, erythrocyte (Erythroi...	36	0.083
20	SY111_ARATH (Q42374) Syntaxin-related protein KNOLLE (Syntaxin-1...	35	0.14
21	SY123_ARATH (Q9ZQZ8) Syntaxin-123 (AtSYP123)	32	0.92
22	YMQ5_CAEEL (P83351) Hypothetical protein K02D10.5 on chromosome III	32	1.2
23	SY125_ARATH (Q9SXB0) Putative syntaxin-125 (AtSYP125)	32	1.6
24	KIF5A_PONPY (Q5R9K7) Kinesin heavy chain isoform 5A	31	2.0
25	MCM3_MOUSE (P25206) DNA replication licensing factor MCM3 (DNA p...	31	2.0
26	UL24_SHV21 (Q01005) Gene 20 protein	30	3.5
27	TPM_ONCVO (Q25632) Tropomyosin (MOv-14) (Ov-tmy-1)	30	3.5
28	TPM_ANISI (Q9NAS5) Tropomyosin (Allergen Ani s 3)	30	3.5
29	TPMM_TRICO (P15846) Tropomyosin, muscle	30	3.5
30	TAF1_DROME (P51123) Transcription initiation factor TFIID subuni...	30	4.5
31	MRP2_MOUSE (Q8VI47) Canalicular multispecific organic anion tran...	30	4.5
32	MUTS_LEGPL (Q5WVP6) DNA mismatch repair protein mutS	30	5.9
33	MUTS_LEGPH (Q5ZUJ3) DNA mismatch repair protein mutS	30	5.9
34	MUTS_LEGPA (Q5X4B2) DNA mismatch repair protein mutS	30	5.9
35	KIF5A_HUMAN (Q12840) Kinesin heavy chain isoform 5A (Neuronal ki...	30	5.9
36	KIF5A_MOUSE (P33175) Kinesin heavy chain isoform 5A (Neuronal ki...	30	5.9
37	LAMA_DROME (Q00174) Laminin alpha chain precursor	29	7.8
38	SYP31_ARATH (Q9FFK1) Syntaxin-31 (AtSYP31) (AtSED5)	29	7.8
39	ATPF_OCHNE (Q40609) ATP synthase B chain (EC 3.6.3.14) (ATPase s...	29	7.8

>VTI13_ARATH (Q9LVP9) Vesicle transport v-SNARE 13 (AtVTI13) (Vesicle transport|
           v-SNARE protein VTI13) (Vesicle soluble NSF attachment
           protein receptor 13)
          Length = 221

 Score =  157 bits (397), Expect = 2e-38
 Identities = 77/101 (76%), Positives = 90/101 (89%)
 Frame = -1

Query: 551 QRGRLMMTTERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDN 372
           QR RLMM+T+ L ++TDRIK+SRRT+LETEELGVSILQDLH QRQSLL AH+TLHGVDDN
Sbjct: 119 QRSRLMMSTDHLGRTTDRIKDSRRTILETEELGVSILQDLHGQRQSLLRAHETLHGVDDN 178

Query: 371 VGKSKKILAAMSKRMDRNKWIIGGIISTLVVAILIILYFKL 249
           VGKSKKIL  M++RM+RNKW IG II+ LV+AI+ ILYFKL
Sbjct: 179 VGKSKKILTTMTRRMNRNKWTIGAIITVLVLAIIFILYFKL 219

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>VTI11_ARATH (Q9SEL6) Vesicle transport v-SNARE 11 (AtVTI11) (Vesicle transport|
           v-SNARE protein VTI1a) (Vesicle soluble NSF attachment
           protein receptor VTI1a) (AtVTI1a)
          Length = 221

 Score =  156 bits (395), Expect = 3e-38
 Identities = 75/101 (74%), Positives = 89/101 (88%)
 Frame = -1

Query: 551 QRGRLMMTTERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDN 372
           QR RLMM+TERL ++TDR+K+SRRTM+ETEE+GVSILQDLH QRQSLL AH+TLHGVDDN
Sbjct: 119 QRARLMMSTERLGRTTDRVKDSRRTMMETEEIGVSILQDLHGQRQSLLRAHETLHGVDDN 178

Query: 371 VGKSKKILAAMSKRMDRNKWIIGGIISTLVVAILIILYFKL 249
           +GKSKKIL  M++RM++NKW IG II  L+ AI IILYFKL
Sbjct: 179 IGKSKKILTDMTRRMNKNKWTIGAIIIALIAAIFIILYFKL 219

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>VTI12_ARATH (Q9SEL5) Vesicle transport v-SNARE 12 (AtVTI12) (Vesicle transport|
           v-SNARE protein VTI1b) (Vesicle soluble NSF attachment
           protein receptor VTI1b) (AtVTI1b)
          Length = 222

 Score =  146 bits (369), Expect = 3e-35
 Identities = 70/103 (67%), Positives = 89/103 (86%)
 Frame = -1

Query: 551 QRGRLMMTTERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDN 372
           QRGRL M+ ERL+QS+DRI+ESRR MLETEE+G+SI+QDL QQRQ+LLHAH+ LHGVDD 
Sbjct: 120 QRGRLAMSVERLDQSSDRIRESRRLMLETEEVGISIVQDLSQQRQTLLHAHNKLHGVDDA 179

Query: 371 VGKSKKILAAMSKRMDRNKWIIGGIISTLVVAILIILYFKLAH 243
           + KSKK+L AMS+RM RNKWII  +I  LV+AI++I+ +KL+H
Sbjct: 180 IDKSKKVLTAMSRRMTRNKWIITSVIVALVLAIILIISYKLSH 222

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>VTI1_SCHPO (P78768) Vesicle transport v-SNARE protein vti1|
          Length = 214

 Score = 80.1 bits (196), Expect = 4e-15
 Identities = 42/100 (42%), Positives = 63/100 (63%)
 Frame = -1

Query: 551 QRGRLMMTTERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDN 372
           QR RL+  T RL QS+ R+ ES+R   ETE +G SIL+DLH QR  L H+ + L     +
Sbjct: 113 QRTRLLQGTNRLEQSSQRLLESQRIANETEGIGASILRDLHGQRNQLEHSLEMLGDTSGH 172

Query: 371 VGKSKKILAAMSKRMDRNKWIIGGIISTLVVAILIILYFK 252
           + +S + L  M++R+  N++    II+ LV+ IL++LY K
Sbjct: 173 LDRSLRTLKTMARRLAMNRFFTTAIIAILVILILLVLYSK 212

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>VTI1_YEAST (Q04338) t-SNARE VTI1 (Qb-SNARE VTI1) (Vesicle transport v-SNARE|
           protein VTI1) (VPS10-interacting protein 1)
          Length = 216

 Score = 72.4 bits (176), Expect = 8e-13
 Identities = 40/100 (40%), Positives = 61/100 (61%)
 Frame = -1

Query: 551 QRGRLMMTTERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDN 372
           QR +L+     L +S DR+K++ R   ETE +G  I+ DL  QR++L +A  TL   D  
Sbjct: 115 QRQQLLSNHAILQKSGDRLKDASRIANETEGIGSQIMMDLRSQRETLENARQTLFQADSY 174

Query: 371 VGKSKKILAAMSKRMDRNKWIIGGIISTLVVAILIILYFK 252
           V KS K L  M++R+  NK+I   II+ L++ IL++L+ K
Sbjct: 175 VDKSIKTLKTMTRRLVANKFISYAIIAVLILLILLVLFSK 214

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>VTI1B_MOUSE (O88384) Vesicle transport through interaction with t-SNAREs|
           homolog 1B (Vesicle transport v-SNARE protein Vti1-like
           1) (Vti1-rp1)
          Length = 232

 Score = 68.9 bits (167), Expect = 9e-12
 Identities = 34/100 (34%), Positives = 61/100 (61%)
 Frame = -1

Query: 551 QRGRLMMTTERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDN 372
           QR  L+  TE LN++T  I+ S R   ET+++G  I+++L +QR  L      L   ++N
Sbjct: 128 QRALLLQGTESLNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNEN 187

Query: 371 VGKSKKILAAMSKRMDRNKWIIGGIISTLVVAILIILYFK 252
           + KS+KIL +MS+++  NK ++  II   +  ++ ++Y+K
Sbjct: 188 LSKSRKILRSMSRKVITNKLLLSVIILLELAILVGLVYYK 227

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>VTI1B_HUMAN (Q9UEU0) Vesicle transport through interaction with t-SNAREs|
           homolog 1B (Vesicle transport v-SNARE protein Vti1-like
           1) (Vti1-rp1)
          Length = 232

 Score = 66.6 bits (161), Expect = 4e-11
 Identities = 34/100 (34%), Positives = 59/100 (59%)
 Frame = -1

Query: 551 QRGRLMMTTERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDN 372
           QR  L+  TE LN++T  I+ S R   ET+++G  I+++L +QR  L      L    +N
Sbjct: 128 QRAMLLQGTESLNRATQSIERSHRIATETDQIGSEIIEELGEQRDQLERTKSRLVNTSEN 187

Query: 371 VGKSKKILAAMSKRMDRNKWIIGGIISTLVVAILIILYFK 252
           + KS+KIL +MS+++  NK ++  II   +  +  ++Y+K
Sbjct: 188 LSKSRKILRSMSRKVTTNKLLLSIIILLELAILGGLVYYK 227

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>VTI1A_MOUSE (O89116) Vesicle transport through interaction with t-SNAREs|
           homolog 1A (Vesicle transport v-SNARE protein Vti1-like
           2) (Vti1-rp2)
          Length = 217

 Score = 66.2 bits (160), Expect = 6e-11
 Identities = 34/99 (34%), Positives = 60/99 (60%)
 Frame = -1

Query: 551 QRGRLMMTTERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDN 372
           QR  L+  TERL +S+ R++   +  +ETE++G  +L++L   R+ +  A D L   D N
Sbjct: 114 QRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARDRLRDADAN 173

Query: 371 VGKSKKILAAMSKRMDRNKWIIGGIISTLVVAILIILYF 255
           +GKS +IL  M +R+ +N+ ++  +   +V+AIL  + F
Sbjct: 174 LGKSSRILTGMLRRIIQNRILLVILGIIVVIAILTAIAF 212

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>VTI1A_RAT (Q9JI51) Vesicle transport through interaction with t-SNAREs|
           homolog 1A (Vesicle transport v-SNARE protein Vti1-like
           2) (Vti1-rp2)
          Length = 224

 Score = 61.2 bits (147), Expect = 2e-09
 Identities = 31/96 (32%), Positives = 59/96 (61%)
 Frame = -1

Query: 551 QRGRLMMTTERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDN 372
           +R  L+  TERL +S+ R++   +  +ETE++G  +L++L   R+ +  A + L   D N
Sbjct: 121 ERAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDAN 180

Query: 371 VGKSKKILAAMSKRMDRNKWIIGGIISTLVVAILII 264
           +GKS +IL  M +R+ +N+ ++  +I  ++V I I+
Sbjct: 181 LGKSSRILTGMLRRIIQNRILL--VILGIIVVITIL 214

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>VTI1A_HUMAN (Q96AJ9) Vesicle transport through interaction with t-SNAREs|
           homolog 1A (Vesicle transport v-SNARE protein Vti1-like
           2) (Vti1-rp2)
          Length = 203

 Score = 56.6 bits (135), Expect = 5e-08
 Identities = 27/74 (36%), Positives = 45/74 (60%)
 Frame = -1

Query: 551 QRGRLMMTTERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDN 372
           QR  L+  TERL +S+ R++   +  +ETE++G  +L++L   R+ +  A + L   D N
Sbjct: 114 QRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARERLRETDAN 173

Query: 371 VGKSKKILAAMSKR 330
           +GKS +IL  M +R
Sbjct: 174 LGKSSRILTGMLRR 187

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>MEM11_ARATH (Q9SJL6) Membrin 11 (AtMEMB11) (Golgi SNAP receptor complex member|
           2-1) (27 kDa Golgi SNARE protein)
          Length = 225

 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
 Frame = -1

Query: 512 QSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDNVGKSKKILAAMSK 333
           Q+   +K S+R + E+   GV+IL    +QR  L  A      V + VG S  +L  + +
Sbjct: 138 QAMSSVKNSKRMLEESFSSGVAILSKYAEQRDRLKSAQRKALDVLNTVGLSNSVLRLIER 197

Query: 332 RMDRNKWI-IGGIISTLVVAILII 264
           R   + WI   G+I+TLV+  L I
Sbjct: 198 RNRVDTWIKYAGMIATLVILYLFI 221

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>MEM12_ARATH (Q9FK28) Membrin 12 (AtMEMB12) (Golgi SNAP receptor complex member|
           2-2)
          Length = 219

 Score = 42.7 bits (99), Expect = 7e-04
 Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
 Frame = -1

Query: 512 QSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDNVGKSKKILAAMSK 333
           Q  + +K S+R + ++ + GV+IL    +QR  L  A      V + VG S  +L  + +
Sbjct: 132 QGMNSVKNSKRMLEDSFQSGVAILSKYAEQRDRLKSAQRKALDVLNTVGLSNSVLRLIER 191

Query: 332 RMDRNKWI-IGGIISTLVVAILII 264
           R   + WI   G+I+TLV+  L I
Sbjct: 192 RNRVDTWIKYAGMIATLVILYLFI 215

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>GOSR2_DROME (Q9VRL2) Probable Golgi SNAP receptor complex member 2|
          Length = 216

 Score = 39.7 bits (91), Expect = 0.006
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
 Frame = -1

Query: 455 GVSILQDLHQQRQSLLHAHDTLHGVDDNVGKSKKILAAMSKRMDRNKWI-IGGIISTLVV 279
           G  IL+ L  QR +L  AH  +  +   +G S   +  + +R+  ++ I IGG++ TL++
Sbjct: 147 GSGILESLISQRMTLGGAHKRIQAIGSTLGLSNHTMKLIERRLVEDRRIFIGGVVVTLLI 206

Query: 278 AILIILYFKL 249
             LII +  L
Sbjct: 207 IALIIYFLVL 216

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>GOSR1_RAT (Q62931) Golgi SNAP receptor complex member 1 (28 kDa Golgi SNARE|
           protein) (28 kDa cis-Golgi SNARE p28) (GOS-28)
          Length = 250

 Score = 36.6 bits (83), Expect = 0.049
 Identities = 21/90 (23%), Positives = 45/90 (50%)
 Frame = -1

Query: 527 TERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDNVGKSKKIL 348
           TE   +  D ++ S R + ET  + ++  +++  QR  L   H  ++ + +       ++
Sbjct: 160 TELFLKEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLI 219

Query: 347 AAMSKRMDRNKWIIGGIISTLVVAILIILY 258
             ++ R  R+  I+GG+I   +  IL++LY
Sbjct: 220 QRINLRKRRDSLILGGVIG--ICTILLLLY 247

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>GOSR1_MOUSE (O88630) Golgi SNAP receptor complex member 1 (28 kDa Golgi SNARE|
           protein) (28 kDa cis-Golgi SNARE p28) (GOS-28)
          Length = 250

 Score = 36.6 bits (83), Expect = 0.049
 Identities = 21/90 (23%), Positives = 45/90 (50%)
 Frame = -1

Query: 527 TERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDNVGKSKKIL 348
           TE   +  D ++ S R + ET  + ++  +++  QR  L   H  ++ + +       ++
Sbjct: 160 TELFLKEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLI 219

Query: 347 AAMSKRMDRNKWIIGGIISTLVVAILIILY 258
             ++ R  R+  I+GG+I   +  IL++LY
Sbjct: 220 QRINLRKRRDSLILGGVIG--ICTILLLLY 247

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>GOSR1_HUMAN (O95249) Golgi SNAP receptor complex member 1 (28 kDa Golgi SNARE|
           protein) (28 kDa cis-Golgi SNARE p28) (GOS-28)
          Length = 250

 Score = 36.6 bits (83), Expect = 0.049
 Identities = 21/90 (23%), Positives = 45/90 (50%)
 Frame = -1

Query: 527 TERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDNVGKSKKIL 348
           TE   +  D ++ S R + ET  + ++  +++  QR  L   H  ++ + +       ++
Sbjct: 160 TELFLKEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLI 219

Query: 347 AAMSKRMDRNKWIIGGIISTLVVAILIILY 258
             ++ R  R+  I+GG+I   +  IL++LY
Sbjct: 220 QRINLRKRRDSLILGGVIG--ICTILLLLY 247

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>GOSR1_CRIGR (O08522) Golgi SNAP receptor complex member 1 (28 kDa Golgi SNARE|
           protein) (28 kDa cis-Golgi SNARE p28) (GOS-28)
          Length = 250

 Score = 36.6 bits (83), Expect = 0.049
 Identities = 21/90 (23%), Positives = 45/90 (50%)
 Frame = -1

Query: 527 TERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDNVGKSKKIL 348
           TE   +  D ++ S R + ET  + ++  +++  QR  L   H  ++ + +       ++
Sbjct: 160 TELFLKEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLI 219

Query: 347 AAMSKRMDRNKWIIGGIISTLVVAILIILY 258
             ++ R  R+  I+GG+I   +  IL++LY
Sbjct: 220 QRINLRKRRDSLILGGVIG--ICTILLLLY 247

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>GOSR1_PONPY (Q5RBL6) Golgi SNAP receptor complex member 1|
          Length = 248

 Score = 36.6 bits (83), Expect = 0.049
 Identities = 21/90 (23%), Positives = 45/90 (50%)
 Frame = -1

Query: 527 TERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDNVGKSKKIL 348
           TE   +  D ++ S R + ET  + ++  +++  QR  L   H  ++ + +       ++
Sbjct: 158 TELFLKEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLI 217

Query: 347 AAMSKRMDRNKWIIGGIISTLVVAILIILY 258
             ++ R  R+  I+GG+I   +  IL++LY
Sbjct: 218 QRINLRKRRDSLILGGVIG--ICTILLLLY 245

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>SPTA1_MOUSE (P08032) Spectrin alpha chain, erythrocyte (Erythroid alpha-spectrin)|
          Length = 2415

 Score = 35.8 bits (81), Expect = 0.083
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
 Frame = -1

Query: 440  QDLHQQRQSLLHAHDTLHGV----DDNVGKSKKILAAMSKRMDRNKWI--IGGIIST 288
            +DL +QR  L  A DTL G+     +++ ++ K    +SK  D   WI  IGG+IS+
Sbjct: 1256 EDLQKQRTELNEAWDTLQGLTSDRKESLNEAHKFFLFLSKASDLENWIKTIGGVISS 1312

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>SY111_ARATH (Q42374) Syntaxin-related protein KNOLLE (Syntaxin-111) (AtSYP111)|
          Length = 310

 Score = 35.0 bits (79), Expect = 0.14
 Identities = 21/100 (21%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
 Frame = -1

Query: 548 RGRLMMTTERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSL----LHAHDTLHGV 381
           +G+++ T   +    D  KE  +++LE  ++ + +   +  Q + +     H  +  H V
Sbjct: 205 KGKVLETVVEIQDRYDAAKEIEKSLLELHQVFLDMAVMVESQGEQMDEIEHHVINASHYV 264

Query: 380 DDNVGKSKKILAAMSKRMDRNKWIIGGIISTLVVAILIIL 261
            D   + K    A S + +  KW+  GII  L++ +++++
Sbjct: 265 ADGANELK---TAKSHQRNSRKWMCIGIIVLLLIILIVVI 301

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>SY123_ARATH (Q9ZQZ8) Syntaxin-123 (AtSYP123)|
          Length = 305

 Score = 32.3 bits (72), Expect = 0.92
 Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
 Frame = -1

Query: 548 RGRLMMTTERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDNV 369
           RG++M T   + +  D +KE  R++LE  ++ + +   +  Q        + L+ ++ NV
Sbjct: 199 RGQVMDTLSEIQERHDTVKEIERSLLELHQVFLDMAALVEAQ-------GNMLNDIESNV 251

Query: 368 GKSKKIL--------AAMSKRMDRNKWIIGGIISTLVVAILII 264
            K+   +         A   + +  KW     I  +VV I+I+
Sbjct: 252 SKASSFVMRGTDQLHGAKVLQRNNRKWACIATILAIVVVIVIL 294

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>YMQ5_CAEEL (P83351) Hypothetical protein K02D10.5 on chromosome III|
          Length = 277

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = -1

Query: 518 LNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAH---DTLHGVDDNVGKSKKIL 348
           L +S D  + SRR +  +E++G S  Q L +QR+ L +     D +H       ++   L
Sbjct: 47  LQESLDSTERSRRHLENSEKIGTSTAQQLLEQREKLENTEKNLDEIHRTTQMTQRNLNSL 106

Query: 347 AAMSKRMDRNKW 312
            +    M +NK+
Sbjct: 107 KSFFGGMFKNKF 118

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>SY125_ARATH (Q9SXB0) Putative syntaxin-125 (AtSYP125)|
          Length = 298

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 20/97 (20%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
 Frame = -1

Query: 548 RGRLMMTTERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDNV 369
           RG+++ T   + +  D +KE  + +LE  ++ + +   +  Q Q L +    +      V
Sbjct: 191 RGQILDTISEIQERHDAVKEIEKNLLELHQVFLDMAALVEAQGQQLNNIESHVAKASSFV 250

Query: 368 GK-SKKILAAMSKRMDRNKWIIGGIISTLVVAILIIL 261
            + + ++  A   +    KW    II  +V+ IL+++
Sbjct: 251 RRGTDQLQDAREYQKSSRKWTCYAIILFIVIFILLLI 287

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>KIF5A_PONPY (Q5R9K7) Kinesin heavy chain isoform 5A|
          Length = 1032

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 19/64 (29%), Positives = 33/64 (51%)
 Frame = -1

Query: 524 ERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDNVGKSKKILA 345
           + +NQ +  I++ ++ ML+ EEL VS   D  + +Q L H         D V   K++L 
Sbjct: 433 DEINQQSQLIEKLKQQMLDQEELLVSTRGDNEKVQQELSHLQSENDAAKDEV---KEVLQ 489

Query: 344 AMSK 333
           A+ +
Sbjct: 490 ALEE 493

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>MCM3_MOUSE (P25206) DNA replication licensing factor MCM3 (DNA polymerase|
           alpha holoenzyme-associated protein P1) (P1-MCM3)
          Length = 812

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 18/79 (22%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
 Frame = -1

Query: 527 TERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDNVGKSKKIL 348
           ++++  S  R+K  +  +LE       + Q+ H+Q   +LH  ++++   +    S++I 
Sbjct: 738 SQKVELSEPRLKAFKAALLE-------VFQEAHEQSVGMLHLTESINRNREEPFSSEEIQ 790

Query: 347 AAMSKRMDRNKWIIG-GII 294
           A +S+  D N+ ++  GI+
Sbjct: 791 ACLSRMQDDNQVMVSEGIV 809

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>UL24_SHV21 (Q01005) Gene 20 protein|
          Length = 303

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = -3

Query: 189 RLSGRRCTLDNTDCPLKFTVSPNIFKYLSCSLACHV*QHSCQEVSCARPFYDVKL 25
           +++G +  L+      K+TVS +IFK+LS S       H C   +  R F++V L
Sbjct: 21  KIAGNKAHLETYKKLAKYTVSASIFKFLSIS-------HPCPLRAKTRLFFEVSL 68

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>TPM_ONCVO (Q25632) Tropomyosin (MOv-14) (Ov-tmy-1)|
          Length = 284

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 16/72 (22%), Positives = 41/72 (56%)
 Frame = -1

Query: 542 RLMMTTERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDNVGK 363
           ++   TE+L +  + ++++++ M++TE        DL + ++ L  A+  L   +  V +
Sbjct: 28  KVRQMTEKLERIEEELRDTQKKMMQTE-------NDLVKAQEDLSVANTNLEDKEKKVQE 80

Query: 362 SKKILAAMSKRM 327
           ++  +AA+++RM
Sbjct: 81  AEAEVAALNRRM 92

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>TPM_ANISI (Q9NAS5) Tropomyosin (Allergen Ani s 3)|
          Length = 284

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 15/72 (20%), Positives = 41/72 (56%)
 Frame = -1

Query: 542 RLMMTTERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDNVGK 363
           ++   T++L +  + ++++++ M++TE        DL + ++ L  A+  L   +  V +
Sbjct: 28  KVRQMTDKLERIEEELRDTQKKMMQTE-------NDLDKAQEDLSTANSNLEEKEKKVQE 80

Query: 362 SKKILAAMSKRM 327
           ++  +AA+++RM
Sbjct: 81  AEAEVAALNRRM 92

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>TPMM_TRICO (P15846) Tropomyosin, muscle|
          Length = 284

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 16/72 (22%), Positives = 40/72 (55%)
 Frame = -1

Query: 542 RLMMTTERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDNVGK 363
           ++   TE+L +  + ++++++ M++TE        DL + ++ L  A   L   +  V +
Sbjct: 28  KVRQITEKLERVEEELRDTQKKMMQTE-------NDLDKAQEDLAAATSQLEEKEKKVQE 80

Query: 362 SKKILAAMSKRM 327
           ++  +AA+++RM
Sbjct: 81  AEAEVAALNRRM 92

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>TAF1_DROME (P51123) Transcription initiation factor TFIID subunit 1 (EC|
            2.7.11.1) (Transcription initiation factor TFIID 230 kDa
            subunit) (TAFII-230) (TAFII250) (TBP-associated factor
            230 kDa) (p230)
          Length = 2129

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = +3

Query: 144  RDNLCCPMYSGVQTTLSHNY*TPTVCGTYLAGSVSELKVEYDE 272
            R N  CP+YSG+Q++LS +   P++   +   S  E+ ++ D+
Sbjct: 1358 RTNKACPLYSGMQSSLSQS--NPSLADDFDEQSEKEMTMDDDD 1398

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>MRP2_MOUSE (Q8VI47) Canalicular multispecific organic anion transporter 1|
           (ATP-binding cassette sub-family C member 2)
          Length = 1543

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 18/103 (17%)
 Frame = -1

Query: 497 IKESRRTMLETEELGVSILQDLHQQRQSLLHA--------HDTLHGVDDNVGKSKKILAA 342
           I+E+ +    T +    + +DL + RQ+L             T HG+     +S+ +L  
Sbjct: 228 IEENLKAKSLTSKFKTIMTKDLQKARQALQRRLKKSQQSPEGTSHGLTKKQSQSQDVLVL 287

Query: 341 MSKRMDRNK----------WIIGGIISTLVVAILIILYFKLAH 243
              +  + K          W++  +  T  V IL     KLAH
Sbjct: 288 EDSKKKKKKSEATKDFPKSWLVKALFKTFYVVILKSFILKLAH 330

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>MUTS_LEGPL (Q5WVP6) DNA mismatch repair protein mutS|
          Length = 846

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 13/83 (15%)
 Frame = -1

Query: 494 KESRRTMLETEELGVSILQDLH--------QQRQSLLHAHDTLHGVDDNVGKS-----KK 354
           +E  RT L T +LG + +Q  +        Q      H   TL  V+  +         K
Sbjct: 449 EEKNRTGLSTLKLGYNSVQGFYIELSKAQAQNAPPHFHRKQTLKNVERYITPELKLFEDK 508

Query: 353 ILAAMSKRMDRNKWIIGGIISTL 285
           +L+A SK + R KW+   ++  +
Sbjct: 509 VLSAQSKALAREKWLYDNLLEEI 531

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>MUTS_LEGPH (Q5ZUJ3) DNA mismatch repair protein mutS|
          Length = 846

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 13/83 (15%)
 Frame = -1

Query: 494 KESRRTMLETEELGVSILQDLH--------QQRQSLLHAHDTLHGVDDNVGKS-----KK 354
           +E  RT L T +LG + +Q  +        Q      H   TL  V+  +         K
Sbjct: 449 EEKNRTGLSTLKLGYNSVQGFYIELSKAQAQNAPPHFHRKQTLKNVERYITPELKLFEDK 508

Query: 353 ILAAMSKRMDRNKWIIGGIISTL 285
           +L+A SK + R KW+   ++  +
Sbjct: 509 VLSAQSKALAREKWLYDNLLEEI 531

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>MUTS_LEGPA (Q5X4B2) DNA mismatch repair protein mutS|
          Length = 846

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 13/83 (15%)
 Frame = -1

Query: 494 KESRRTMLETEELGVSILQDLH--------QQRQSLLHAHDTLHGVDDNVGKS-----KK 354
           +E  RT L T +LG + +Q  +        Q      H   TL  V+  +         K
Sbjct: 449 EEKNRTGLSTLKLGYNSVQGFYIELSKAQAQNAPPHFHRKQTLKNVERYITPELKLFEDK 508

Query: 353 ILAAMSKRMDRNKWIIGGIISTL 285
           +L+A SK + R KW+   ++  +
Sbjct: 509 VLSAQSKALAREKWLYDNLLEEI 531

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>KIF5A_HUMAN (Q12840) Kinesin heavy chain isoform 5A (Neuronal kinesin heavy|
           chain) (NKHC) (Kinesin heavy chain neuron-specific 1)
          Length = 1032

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 18/64 (28%), Positives = 33/64 (51%)
 Frame = -1

Query: 524 ERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDNVGKSKKILA 345
           + +NQ +  I++ ++ ML+ EEL VS   D  + ++ L H         D V   K++L 
Sbjct: 433 DEINQQSQLIEKLKQQMLDQEELLVSTRGDNEKVQRELSHLQSENDAAKDEV---KEVLQ 489

Query: 344 AMSK 333
           A+ +
Sbjct: 490 ALEE 493

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>KIF5A_MOUSE (P33175) Kinesin heavy chain isoform 5A (Neuronal kinesin heavy|
           chain) (NKHC) (Kinesin heavy chain neuron-specific 1)
          Length = 1027

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 18/64 (28%), Positives = 33/64 (51%)
 Frame = -1

Query: 524 ERLNQSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLHGVDDNVGKSKKILA 345
           + +NQ +  I++ ++ ML+ EEL VS   D  + ++ L H         D V   K++L 
Sbjct: 433 DEINQQSQLIEKLKQQMLDQEELLVSTRGDNEKVQRELSHLQSENDAAKDEV---KEVLQ 489

Query: 344 AMSK 333
           A+ +
Sbjct: 490 ALEE 493

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>LAMA_DROME (Q00174) Laminin alpha chain precursor|
          Length = 3712

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -3

Query: 201 NCVIRLSGRRCTLDNTDCPLKFTVSPNIFKYLSCSLACHV*QHSCQEVSC 52
           NC+   +G++CTL           +   + Y  C L CH   H  Q VSC
Sbjct: 606 NCLNNFAGKQCTL----------CTAGYYSYPDC-LPCHCDSHGSQGVSC 644

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>SYP31_ARATH (Q9FFK1) Syntaxin-31 (AtSYP31) (AtSED5)|
          Length = 336

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 18/91 (19%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
 Frame = -1

Query: 503 DRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHDTLH-GVDDNVGKS-------KKIL 348
           +   +SR   L + E  ++ L  +  Q  +++     L   +DDN+ +S       +  L
Sbjct: 244 ENYSQSRAVALHSVESRITELSGIFPQLATMVTQQGELAIRIDDNMDESLVNVEGARSAL 303

Query: 347 AAMSKRMDRNKWIIGGIISTLVVAILIILYF 255
                R+  N+W++  I + +++ +++ L+F
Sbjct: 304 LQHLTRISSNRWLMMKIFAVIILFLIVFLFF 334

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>ATPF_OCHNE (Q40609) ATP synthase B chain (EC 3.6.3.14) (ATPase subunit I)|
          Length = 178

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 14/37 (37%), Positives = 25/37 (67%)
 Frame = -1

Query: 545 GRLMMTTERLNQSTDRIKESRRTMLETEELGVSILQD 435
           G +    ERL Q+T+R+KES +T LE  +L ++ +++
Sbjct: 62  GAIQEAEERLEQATERLKES-KTQLEQAQLVIASIKE 97


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,851,278
Number of Sequences: 219361
Number of extensions: 1550403
Number of successful extensions: 4280
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 4165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4279
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4488201198
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result