ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart31b05 |
|---|---|
| Clone Library Name | barley_pub |
>PFPB_RICCO (Q41141) Pyrophosphate--fructose 6-phosphate 1-phosphotransferase| beta subunit (EC 2.7.1.90) (PFP) (6-phosphofructokinase, pyrophosphate-dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-PFK) Length = 552 Score = 179 bits (454), Expect = 4e-45 Identities = 84/101 (83%), Positives = 95/101 (94%) Frame = -2 Query: 511 LLQFGKTGLISSVGNLAAPVEQWTVGGTALTALMDVERRHGKFKPVIKKAMVELDAAPFK 332 LL GKTGLISSVGNL APV +WTVGGTALT+LMDVERRHGKFKPVIKKAMVEL+ APFK Sbjct: 450 LLHSGKTGLISSVGNLGAPVAEWTVGGTALTSLMDVERRHGKFKPVIKKAMVELEGAPFK 509 Query: 331 KFASMRDEWAIKNRYISPGPIQFSGPGSDASNHTLMLELGA 209 KFAS+R+EWA+KNRY+SPGPIQF GPGSDA++HTL+LELG+ Sbjct: 510 KFASLREEWALKNRYVSPGPIQFMGPGSDAASHTLLLELGS 550
>PFPB_SOLTU (P21343) Pyrophosphate--fructose 6-phosphate 1-phosphotransferase| beta subunit (EC 2.7.1.90) (PFP) (6-phosphofructokinase, pyrophosphate dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-PFK) Length = 552 Score = 169 bits (429), Expect = 3e-42 Identities = 83/102 (81%), Positives = 92/102 (90%) Frame = -2 Query: 511 LLQFGKTGLISSVGNLAAPVEQWTVGGTALTALMDVERRHGKFKPVIKKAMVELDAAPFK 332 LLQ GKTGLISSVGNLAAPVE+ TVGGTALTALMDVERRHGKFKPVIKKAMVEL+ APFK Sbjct: 450 LLQSGKTGLISSVGNLAAPVEELTVGGTALTALMDVERRHGKFKPVIKKAMVELEGAPFK 509 Query: 331 KFASMRDEWAIKNRYISPGPIQFSGPGSDASNHTLMLELGAE 206 KFAS R+EWA+ NRYI+PGPIQF GP ++ NHTL+LELG + Sbjct: 510 KFASKREEWALNNRYINPGPIQFVGPVANKVNHTLLLELGVD 551
>PFPA_SOLTU (P21342) Pyrophosphate--fructose 6-phosphate 1-phosphotransferase| alpha subunit (EC 2.7.1.90) (PFP) (6-phosphofructokinase, pyrophosphate-dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-PFK) Length = 616 Score = 57.0 bits (136), Expect = 3e-08 Identities = 31/104 (29%), Positives = 57/104 (54%), Gaps = 6/104 (5%) Frame = -2 Query: 511 LLQFGKTGLISSVGNLAAPVEQWTVGGTALTALMDVERRH---GKFK---PVIKKAMVEL 350 +L G G ++++ NL P +W G + ++A+M V+R GK P + A V+L Sbjct: 455 ILAAGLNGYMATITNLKNPANKWHCGASPISAMMTVKRYGRGPGKASIGVPALHPATVDL 514 Query: 349 DAAPFKKFASMRDEWAIKNRYISPGPIQFSGPGSDASNHTLMLE 218 ++ + ++ + + Y +PGP+QF GPG+DA +L++E Sbjct: 515 RGKSYELLSQNATKFLLDDVYRNPGPLQFDGPGADAKAGSLVVE 558
>PFPA_RICCO (Q41140) Pyrophosphate--fructose 6-phosphate 1-phosphotransferase| alpha subunit (EC 2.7.1.90) (PFP) (6-phosphofructokinase, pyrophosphate dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-PFK) Length = 617 Score = 56.6 bits (135), Expect = 4e-08 Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 6/104 (5%) Frame = -2 Query: 511 LLQFGKTGLISSVGNLAAPVEQWTVGGTALTALMDVER------RHGKFKPVIKKAMVEL 350 +L G G +++ NL PV +W G + A+M V+R KP I A V+L Sbjct: 455 VLAAGLNGYMATATNLKNPVNKWRCGAAPIAAMMTVKRWAQNPGATSIGKPAIHPAAVDL 514 Query: 349 DAAPFKKFASMRDEWAIKNRYISPGPIQFSGPGSDASNHTLMLE 218 ++ ++ + + Y +PGP+QF GPG+DA TL +E Sbjct: 515 KGKAYELLRLNAVKFLMDDLYRNPGPLQFEGPGADAKPITLCVE 558
>Y2348_MYCLE (Q49929) Hypothetical glycosyl transferase ML2348 (EC 2.-.-.-)| Length = 421 Score = 37.4 bits (85), Expect = 0.024 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 8/107 (7%) Frame = +2 Query: 122 WEVCSPLSKLQGTRRKFQRDALYIRSLYLGAELQHQGVV-RGVASRAAELDGTGADVSVL 298 W++ P+ LQ R+ + A ++SL GA+L GVV +GV + AE G V Sbjct: 73 WKILPPIKALQQLRQAWADMATDLKSLADGADLVMTGVVYQGVVANVAEYYGIPFGVL-- 130 Query: 299 DGPFIPHR--GKLLKWRSIKLNHSLL-----DHWLELAMPPLNIHQR 418 F+P R GK++ LN ++L HWL LA P + +R Sbjct: 131 --HFVPARVNGKIIPSLPSPLNRAILATVWRAHWL-LAKKPEDAQRR 174
>NU1M_HYLLA (Q96126) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 318 Score = 33.1 bits (74), Expect = 0.46 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 5/75 (6%) Frame = +3 Query: 162 EENFKEMHSTSALYISAPSSNIKV----WFEASLPGPLNWMGPGLMYRFLMAHSSRIEAN 329 +E K ST+ALYI AP+ + + W +P PL + GL+ F++A SS + Sbjct: 58 KEPLKPSTSTTALYIIAPTLALTIALLLWTPLPMPNPLINLNLGLL--FILATSSLTVYS 115 Query: 330 FL-NGAASSSTIAFL 371 L +G AS+S A + Sbjct: 116 ILWSGWASNSNYALI 130
>HYAL_STRPU (O76536) Hyalin (Fragment)| Length = 1200 Score = 32.3 bits (72), Expect = 0.78 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%) Frame = +3 Query: 297 LMAHSSRIEANFLNGAASSSTIAFLITGLNL-PCLLSTSINAVSAVPPTVHCSTGAAR 467 L+ +S +F G S + I +G N PC + INAV PPTV+C+ A+ Sbjct: 756 LVTRTSAPGDSFPVGTTSVTYIFTDASGNNAQPCTFNVVINAVDTTPPTVNCANNIAQ 813 Score = 30.0 bits (66), Expect = 3.9 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = +3 Query: 390 PCLLSTSINAVSAVPPTVHCSTGAAR 467 PC + +I+AV PPTV+C A+ Sbjct: 704 PCTFTVTISAVDTTPPTVNCINNVAQ 729
>NU1M_PANTR (Q9T9W3) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 318 Score = 31.6 bits (70), Expect = 1.3 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 5/75 (6%) Frame = +3 Query: 162 EENFKEMHSTSALYISAPSSNIKV----WFEASLPGPLNWMGPGLMYRFLMAHSSRIEAN 329 +E K ST LYI+AP+ + + W +P PL + GL+ F++A SS + Sbjct: 58 KEPLKPSTSTITLYITAPTLALTIALLLWTPLPMPNPLVNLNLGLL--FILATSSLAVYS 115 Query: 330 FL-NGAASSSTIAFL 371 L +G AS+S A + Sbjct: 116 ILWSGWASNSNYALI 130
>NU1M_HUMAN (P03886) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 318 Score = 31.6 bits (70), Expect = 1.3 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 5/75 (6%) Frame = +3 Query: 162 EENFKEMHSTSALYISAPSSNIKV----WFEASLPGPLNWMGPGLMYRFLMAHSSRIEAN 329 +E K ST LYI+AP+ + + W +P PL + GL+ F++A SS + Sbjct: 58 KEPLKPATSTITLYITAPTLALTIALLLWTPLPMPNPLVNLNLGLL--FILATSSLAVYS 115 Query: 330 FL-NGAASSSTIAFL 371 L +G AS+S A + Sbjct: 116 ILWSGWASNSNYALI 130
>NU1M_GORGO (Q9T9Z0) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 318 Score = 31.6 bits (70), Expect = 1.3 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 5/75 (6%) Frame = +3 Query: 162 EENFKEMHSTSALYISAPSSNIKV----WFEASLPGPLNWMGPGLMYRFLMAHSSRIEAN 329 +E K ST LYI+AP+ + + W +P PL + GL+ F++A SS + Sbjct: 58 KEPLKPSTSTITLYITAPTLALTIALLLWTPLPMPNPLVNLNLGLL--FILATSSLAVYS 115 Query: 330 FL-NGAASSSTIAFL 371 L +G AS+S A + Sbjct: 116 ILWSGWASNSNYALI 130
>NU1M_LEMCA (O78696) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 318 Score = 31.2 bits (69), Expect = 1.7 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 5/75 (6%) Frame = +3 Query: 162 EENFKEMHSTSALYISAPSSNIKV----WFEASLPGPLNWMGPGLMYRFLMAHSSRIEAN 329 +E + + S+S+LY AP+ + + W LP PL M GL+ F++A SS + Sbjct: 58 KEPLRPLTSSSSLYTIAPTLALTIALVTWIPLPLPYPLINMNMGLL--FILATSSLAVYS 115 Query: 330 FL-NGAASSSTIAFL 371 L +G AS+S A + Sbjct: 116 ILWSGWASNSKYALI 130
>HYAL_LYTVA (O96530) Hyalin (Fragment)| Length = 530 Score = 30.8 bits (68), Expect = 2.3 Identities = 10/27 (37%), Positives = 17/27 (62%) Frame = +3 Query: 390 PCLLSTSINAVSAVPPTVHCSTGAARL 470 PC+ + ++N V PPTV+C + R+ Sbjct: 477 PCVFTITVNTVDTTPPTVNCVSDVVRV 503
>BUN2_DROME (Q24523) Protein bunched, class 2 isoform (Protein shortsighted)| Length = 1206 Score = 30.0 bits (66), Expect = 3.9 Identities = 22/72 (30%), Positives = 31/72 (43%) Frame = +2 Query: 251 SRAAELDGTGADVSVLDGPFIPHRGKLLKWRSIKLNHSLLDHWLELAMPPLNIHQRSQCS 430 SR + GTG ++ KL K S+ NH + PP NI+Q S + Sbjct: 142 SRGVTIGGTGGNIR-----------KLTKVSSLTSNHHFA-----VCYPPSNIYQNSNNA 185 Query: 431 SSNSPLFHRSSQ 466 SNS L +S+ Sbjct: 186 GSNSALQRTTSE 197
>POLG_TBEVH (Q01299) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1); Nonstructural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Length = 3414 Score = 29.3 bits (64), Expect = 6.6 Identities = 9/21 (42%), Positives = 17/21 (80%) Frame = +2 Query: 287 VSVLDGPFIPHRGKLLKWRSI 349 V +LD PF+ ++GK+++WR + Sbjct: 3328 VWILDNPFMQNKGKVMEWRDV 3348
>TYPA_BACSU (O07631) GTP-binding protein typA/bipA homolog| Length = 612 Score = 28.9 bits (63), Expect = 8.6 Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 7/121 (5%) Frame = +3 Query: 153 KEQEENFKEMHSTSALYISAPSSNIK--VWFEASLPGPLNWMGP---GLMYRFLMAHSSR 317 K+Q+EN + ++ T ++ AP N + + F+ +L +++G G ++R M + Sbjct: 179 KQQDENMEALYETIIKHVPAPVDNAEEPLQFQVALLDYNDYVGRIGIGRVFRGTMKVGQQ 238 Query: 318 IEANFLNGAASSSTIA--FLITGLNLPCLLSTSINAVSAVPPTVHCSTGAARLPTDEISP 491 + L+G A S + F GL + + AV + G P D P Sbjct: 239 VSLMKLDGTAKSFRVTKIFGFQGLKRVEIEEAKAGDLVAVSGMEDINVGETVCPVDHQDP 298 Query: 492 V 494 + Sbjct: 299 L 299 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,827,127 Number of Sequences: 219361 Number of extensions: 1535234 Number of successful extensions: 5493 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 5269 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5489 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3812186532 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
