ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart31b04 |
|---|---|
| Clone Library Name | barley_pub |
>YIHX_SHIFL (P0A8Y4) Phosphatase yihX (EC 3.1.3.-)| Length = 199 Score = 38.9 bits (89), Expect = 0.009 Identities = 16/44 (36%), Positives = 25/44 (56%) Frame = -1 Query: 483 KPNIDAMLHALKLADINPQTTIFFDDSVRNIQAGKQIGMHTVLV 352 KP H L+ +P T+FFDD+ NI+ Q+G+ ++LV Sbjct: 141 KPEARIYQHVLQAEGFSPSDTVFFDDNADNIEGANQLGITSILV 184
>YIHX_ECOLI (P0A8Y3) Phosphatase yihX (EC 3.1.3.-)| Length = 199 Score = 38.9 bits (89), Expect = 0.009 Identities = 16/44 (36%), Positives = 25/44 (56%) Frame = -1 Query: 483 KPNIDAMLHALKLADINPQTTIFFDDSVRNIQAGKQIGMHTVLV 352 KP H L+ +P T+FFDD+ NI+ Q+G+ ++LV Sbjct: 141 KPEARIYQHVLQAEGFSPSDTVFFDDNADNIEGANQLGITSILV 184
>YIEH_ECOLI (P31467) Phosphatase yieH (EC 3.1.3.-)| Length = 221 Score = 38.5 bits (88), Expect = 0.011 Identities = 22/71 (30%), Positives = 28/71 (39%) Frame = -1 Query: 483 KPNIDAMLHALKLADINPQTTIFFDDSVRNIQAGKQIGMHTVLVGTSERIKGADHALESL 304 KP+ M HA K ++N + I DDSV Q+G GM K H + Sbjct: 142 KPDPALMFHAAKAMNVNVENCILVDDSVAGAQSGIDAGMEVFYFCADPHNKPIVHPKVTT 201 Query: 303 HNMKEAFPELW 271 PELW Sbjct: 202 FTHLSQLPELW 212
>YHCW_BACSU (P54607) Hypothetical protein yhcW| Length = 220 Score = 37.0 bits (84), Expect = 0.033 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 6/72 (8%) Frame = -1 Query: 483 KPNIDAMLHALKLADINPQTTIFFDDSVRNIQAGKQIGMHTVLVGTSERIKGA------D 322 KPN + L A K ++P + F+DSV A K+ GM V+V ++ G D Sbjct: 141 KPNPELYLLAAKNLGVSPAECLAFEDSVNGSIAAKRAGMKCVIV--PNKVTGTLMFEDYD 198 Query: 321 HALESLHNMKEA 286 H LES+ M+ A Sbjct: 199 HRLESMAEMELA 210
>GMHB_PASMU (Q9CK98) D,D-heptose 1,7-bisphosphate phosphatase (EC 3.1.3.-)| (D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase) Length = 184 Score = 35.4 bits (80), Expect = 0.095 Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 6/69 (8%) Frame = -1 Query: 483 KPNIDAMLHALKLADINPQTTIFFDDSVRNIQAGKQIGM-HTVLVGTSERI-----KGAD 322 KP +L A+K +I+P T+ D V ++ AGK + +TVLV T + I K A+ Sbjct: 107 KPKPGMLLQAIKELNIDPNTSFMVGDKVEDMLAGKGAKIKNTVLVKTGKPITEDGKKQAN 166 Query: 321 HALESLHNM 295 + LES+ ++ Sbjct: 167 YVLESIADL 175
>SSM1_YEAST (P53078) Protein SSM1| Length = 280 Score = 34.7 bits (78), Expect = 0.16 Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 1/47 (2%) Frame = -1 Query: 492 ILCKPNIDAMLHALKLADI-NPQTTIFFDDSVRNIQAGKQIGMHTVL 355 ++CKP++ A A+K + + + F DDS +NI+ G ++GM T + Sbjct: 199 LVCKPHVKAFEKAMKESGLARYENAYFIDDSGKNIETGIKLGMKTCI 245
>Y3433_MYCBO (P65070) Hypothetical protein Mb3433| Length = 262 Score = 34.7 bits (78), Expect = 0.16 Identities = 21/67 (31%), Positives = 32/67 (47%) Frame = -1 Query: 516 GVELPRSPILCKPNIDAMLHALKLADINPQTTIFFDDSVRNIQAGKQIGMHTVLVGTSER 337 GV L I KP D+ L A +L + P F+D++ + AG+ G V+VG + Sbjct: 179 GVTLREEHIAGKPAPDSFLRAAELLGVTPDAAAVFEDALSGVAAGR-AGNFAVVVGINRT 237 Query: 336 IKGADHA 316 + A A Sbjct: 238 GRAAQAA 244
>Y3400_MYCTU (P65069) Hypothetical protein Rv3400/MT3508| Length = 262 Score = 34.7 bits (78), Expect = 0.16 Identities = 21/67 (31%), Positives = 32/67 (47%) Frame = -1 Query: 516 GVELPRSPILCKPNIDAMLHALKLADINPQTTIFFDDSVRNIQAGKQIGMHTVLVGTSER 337 GV L I KP D+ L A +L + P F+D++ + AG+ G V+VG + Sbjct: 179 GVTLREEHIAGKPAPDSFLRAAELLGVTPDAAAVFEDALSGVAAGR-AGNFAVVVGINRT 237 Query: 336 IKGADHA 316 + A A Sbjct: 238 GRAAQAA 244
>P1254_THEMA (Q9X0Y1) Phosphorylated carbohydrates phosphatase TM1254 (EC| 3.1.3.-) Length = 216 Score = 34.3 bits (77), Expect = 0.21 Identities = 25/85 (29%), Positives = 40/85 (47%) Frame = -1 Query: 483 KPNIDAMLHALKLADINPQTTIFFDDSVRNIQAGKQIGMHTVLVGTSERIKGADHALESL 304 KP+ + L L+ ++ P+ + F+DS ++A K G+ ERI G H+L Sbjct: 140 KPDPEIYLLVLERLNVVPEKVVVFEDSKSGVEAAKSAGI--------ERIYGVVHSLNDG 191 Query: 303 HNMKEAFPELWVEAVKDEDVRNSSK 229 + EA V VK E++ N K Sbjct: 192 KALLEAGA---VALVKPEEILNVLK 213
>Y488_HAEIN (P44004) Hypothetical protein HI0488| Length = 200 Score = 33.1 bits (74), Expect = 0.47 Identities = 18/50 (36%), Positives = 24/50 (48%) Frame = -1 Query: 483 KPNIDAMLHALKLADINPQTTIFFDDSVRNIQAGKQIGMHTVLVGTSERI 334 KP+ + L +L NP I F+D+ +QAG GM V T E I Sbjct: 148 KPHPETFLRCAELIQANPSRCIVFEDADLGVQAGLSAGMDVFDVRTREII 197
>CBBY_RHOSH (P95649) Protein cbbY| Length = 230 Score = 32.7 bits (73), Expect = 0.61 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 4/63 (6%) Frame = -1 Query: 483 KPNIDAMLHALKLADINPQTTIFFDDSVRNIQAGKQIGMHTVL----VGTSERIKGADHA 316 KP+ D AL+ D+ P+ + +DS+ ++A K G+ ++ E GAD Sbjct: 151 KPSPDIYRLALRELDVPPERAVALEDSLNGLRAAKGAGLRCIVSPGFYTRHEEFAGADRL 210 Query: 315 LES 307 L+S Sbjct: 211 LDS 213
>Y393_MYCLE (Q49741) Hypothetical protein ML0393| Length = 261 Score = 32.7 bits (73), Expect = 0.61 Identities = 15/45 (33%), Positives = 23/45 (51%) Frame = -1 Query: 516 GVELPRSPILCKPNIDAMLHALKLADINPQTTIFFDDSVRNIQAG 382 G+ L I KP D+ L +L D+ P F+D++ +QAG Sbjct: 178 GITLREEHIAGKPAPDSYLRGAQLLDVAPDAAAVFEDALSGVQAG 222
>GPH_PSEPU (P42509) Probable phosphoglycolate phosphatase (EC 3.1.3.18)| (PGPase) (PGP) (Fragment) Length = 251 Score = 32.0 bits (71), Expect = 1.0 Identities = 14/42 (33%), Positives = 25/42 (59%) Frame = -1 Query: 483 KPNIDAMLHALKLADINPQTTIFFDDSVRNIQAGKQIGMHTV 358 KP+ A+L +++A + PQ ++F DS ++ A K G+ V Sbjct: 136 KPDPAALLFVMQMAGVTPQQSLFVGDSRSDVLAAKAAGVQCV 177
>GPH2_PSEAE (Q9HZ62) Phosphoglycolate phosphatase 2 (EC 3.1.3.18) (PGPase2)| (PGP 2) Length = 226 Score = 31.6 bits (70), Expect = 1.4 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = -1 Query: 483 KPNIDAMLHALKLADINPQTTIFFDDSVRNIQAGKQIGMHTVLV 352 KP+ + +L A I+P +F D +R+I++G+ G T V Sbjct: 146 KPDPEPLLLACSQLGIDPSRVLFIGDDLRDIESGRDAGTKTAAV 189
>GMHB_HAEIN (P46452) D,D-heptose 1,7-bisphosphate phosphatase (EC 3.1.3.-)| (D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase) Length = 184 Score = 31.6 bits (70), Expect = 1.4 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 7/77 (9%) Frame = -1 Query: 483 KPNIDAMLHALKLADINPQTTIFFDDSVRNIQA--GKQIGMHTVLVGTSERIKG-----A 325 KP +L A+K I+P +I D V +++A G ++ M+ VLV T + + G A Sbjct: 107 KPKSGMLLQAIKELKIDPTQSIMVGDKVEDLKAGIGAKVKMN-VLVRTGKPVTGEGEGIA 165 Query: 324 DHALESLHNMKEAFPEL 274 D+ L+S+ ++ L Sbjct: 166 DYVLDSIVDLPRILKRL 182
>PPAX_LISMO (Q8Y4G3) Pyrophosphatase ppaX (EC 3.6.1.1)| Length = 217 Score = 31.2 bits (69), Expect = 1.8 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 1/80 (1%) Frame = -1 Query: 483 KPNIDAMLHALKLADINPQTTIFFDDSVRNIQAGKQIGMHTVLVGTSERIKGADHALESL 304 KP+ + + AL L + + I D+ +I+AGK T+ G + IKG +H + Sbjct: 141 KPDPEGIEMALSLLNATKEEAIMIGDNYHDIEAGK--NAETLTAGVAWAIKGPEHLAQFQ 198 Query: 303 HN-MKEAFPELWVEAVKDED 247 + M E +L + V+DE+ Sbjct: 199 PDFMLEKMSDL-LAIVRDEE 217
>PPAX_LISMF (Q71WU6) Pyrophosphatase ppaX (EC 3.6.1.1)| Length = 217 Score = 31.2 bits (69), Expect = 1.8 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 1/80 (1%) Frame = -1 Query: 483 KPNIDAMLHALKLADINPQTTIFFDDSVRNIQAGKQIGMHTVLVGTSERIKGADHALESL 304 KP+ + + AL L + + I D+ +I+AGK T+ G + IKG +H + Sbjct: 141 KPDPEGIEMALSLLNATKEEAIMIGDNYHDIEAGK--NAETLTAGVAWAIKGPEHLAQFQ 198 Query: 303 HN-MKEAFPELWVEAVKDED 247 + M E +L + V+DE+ Sbjct: 199 PDFMLEKMSDL-LAIVRDEE 217
>PPAX_LISIN (Q928B2) Pyrophosphatase ppaX (EC 3.6.1.1)| Length = 217 Score = 31.2 bits (69), Expect = 1.8 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 1/80 (1%) Frame = -1 Query: 483 KPNIDAMLHALKLADINPQTTIFFDDSVRNIQAGKQIGMHTVLVGTSERIKGADHALESL 304 KP+ + + AL L + + I D+ +I+AGK T+ G + IKG +H + Sbjct: 141 KPDPEGIEMALSLLNATKEEAIMIGDNYHDIEAGK--NAETLTAGVAWAIKGPEHLAQFQ 198 Query: 303 HN-MKEAFPELWVEAVKDED 247 + M E +L + V+DE+ Sbjct: 199 PDFMLEKMSDL-LAIVRDEE 217
>YFBT_ECOLI (P77625) Phosphatase yfbT (EC 3.1.3.-)| Length = 216 Score = 30.8 bits (68), Expect = 2.3 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 3/66 (4%) Frame = -1 Query: 483 KPNIDAMLHALKLADINPQTTIFFDDSVRNIQAGKQIGMHTVLVGT---SERIKGADHAL 313 KP DA L +L + PQ + +D+ + +G G H + V + R+ D L Sbjct: 138 KPEPDAYLLGAQLLGLAPQECVVVEDAPAGVLSGLAAGCHVIAVNAPADTPRLNEVDLVL 197 Query: 312 ESLHNM 295 SL + Sbjct: 198 HSLEQI 203
>MMAC_HUMAN (Q9Y4U1) Methylmalonic aciduria and homocystinuria type C protein| Length = 282 Score = 30.0 bits (66), Expect = 4.0 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Frame = -1 Query: 306 LHNMKEAFPELWVEAVKDEDVRNSSKVGIETSVIA*NPHEVHM-GQAYHYQKQSMHA 139 L ++E+ PEL +E + D +V + + I A H+ G AY+YQ+Q + A Sbjct: 87 LGRVRESLPELQIEIIADYEVHPNRRPKILAQTAA------HVAGAAYYYQRQDVEA 137
>GTF1_STRDO (P11001) Glucosyltransferase-I precursor (EC 2.4.1.5) (GTF-I)| (Dextransucrase) (Sucrose 6-glucosyltransferase) Length = 1597 Score = 30.0 bits (66), Expect = 4.0 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Frame = -2 Query: 410 MTASGTYRPGSRLECTLSWLEPLK-GLKALTMPWRAFTT*RRRFLNY 273 +TA YRP S L+ +W E K + L M W T +R ++NY Sbjct: 240 LTADSWYRPKSILKDGKTWTESSKDDFRPLLMAWWPDTETKRNYVNY 286
>MMAC_MOUSE (Q9CZD0) Methylmalonic aciduria and homocystinuria type C homolog| Length = 279 Score = 29.6 bits (65), Expect = 5.2 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Frame = -1 Query: 306 LHNMKEAFPELWVEAVKDEDVRNSSKVGIETSVIA*NPHEVHM-GQAYHYQKQSMHA 139 L ++ E FPE+ +E + D +V + + I A H+ G AY+YQ+Q + A Sbjct: 87 LRSVTEKFPEVHMEVIADYEVHPNRRPKILAQTAA------HVAGAAYYYQRQDVDA 137
>GMHB_CAMJE (Q6TG07) D,D-heptose 1,7-bisphosphate phosphatase (EC 3.1.3.-)| (D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase) Length = 172 Score = 29.6 bits (65), Expect = 5.2 Identities = 17/65 (26%), Positives = 33/65 (50%) Frame = -1 Query: 483 KPNIDAMLHALKLADINPQTTIFFDDSVRNIQAGKQIGMHTVLVGTSERIKGADHALESL 304 KP +L A D++ + +IF D++ ++QAG + T+++ E+ +G Sbjct: 100 KPKAGMLLKAKDEFDLDMKNSIFIGDNLSDMQAGLNADIGTLILVNEEKKEG--DFFRQF 157 Query: 303 HNMKE 289 N+KE Sbjct: 158 KNLKE 162
>PCRB_NATPD (Q3IT31) Protein pcrB homolog| Length = 235 Score = 29.6 bits (65), Expect = 5.2 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%) Frame = -1 Query: 441 DINPQTTIFFDDSVRNIQAGKQIGMH--TVLVGTSERIKGADHALESLHNMKEA 286 D + T+F+ +R+ ++ + H TV+VG +GAD E++ K+A Sbjct: 180 DATEEATVFYGGGIRDYESAYTMRQHADTVIVGDLVHDEGADAVRETVDGAKDA 233
>PPAX_BACSU (Q9JMQ2) Pyrophosphatase ppaX (EC 3.6.1.1)| Length = 216 Score = 29.3 bits (64), Expect = 6.8 Identities = 18/54 (33%), Positives = 26/54 (48%) Frame = -1 Query: 483 KPNIDAMLHALKLADINPQTTIFFDDSVRNIQAGKQIGMHTVLVGTSERIKGAD 322 KP+ + +L ALK P I D+ ++ AGK G T G + IKG + Sbjct: 141 KPDPEPVLLALKQLGSEPAEAIMVGDNYHDVLAGKNAGTKT--AGVAWTIKGPE 192
>GTF2_STRDO (P27470) Glucosyltransferase-I precursor (EC 2.4.1.5) (GTF-I)| (Dextransucrase) (Sucrose 6-glucosyltransferase) Length = 1592 Score = 29.3 bits (64), Expect = 6.8 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Frame = -2 Query: 410 MTASGTYRPGSRLECTLSWLEPLK-GLKALTMPWRAFTT*RRRFLNY 273 +TA YRP S L+ +W E K + L M W T +R ++NY Sbjct: 234 LTADSWYRPKSILKDGKTWTESGKDDFRPLLMAWWPDTETKRNYVNY 280
>RS3_PSEPK (Q88QM9) 30S ribosomal protein S3| Length = 228 Score = 29.3 bits (64), Expect = 6.8 Identities = 18/56 (32%), Positives = 28/56 (50%) Frame = -1 Query: 483 KPNIDAMLHALKLADINPQTTIFFDDSVRNIQAGKQIGMHTVLVGTSERIKGADHA 316 KP +DAML A +A + +F R +Q +IG + + S R+ GA+ A Sbjct: 108 KPELDAMLVAQSVAQQLERRVMFRRAMKRAVQNAMRIGAKGIKIQVSGRLGGAEIA 163
>RS3_PSEAE (Q9HWE1) 30S ribosomal protein S3| Length = 228 Score = 29.3 bits (64), Expect = 6.8 Identities = 18/56 (32%), Positives = 28/56 (50%) Frame = -1 Query: 483 KPNIDAMLHALKLADINPQTTIFFDDSVRNIQAGKQIGMHTVLVGTSERIKGADHA 316 KP +DAML A +A + +F R +Q +IG + + S R+ GA+ A Sbjct: 108 KPELDAMLVAQSVAQQLERRVMFRRAMKRAVQNAMRIGAKGIKIQVSGRLGGAEIA 163
>GPH_ECOLI (P32662) Phosphoglycolate phosphatase (EC 3.1.3.18) (PGPase) (PGP)| Length = 252 Score = 29.3 bits (64), Expect = 6.8 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = -1 Query: 483 KPNIDAMLHALKLADINPQTTIFFDDSVRNIQAGKQIGMHTV 358 KP+ D +L + I PQ +F DS +IQA K G +V Sbjct: 167 KPHPDPLLLVAERMGIAPQQMLFVGDSRNDIQAAKAAGCPSV 208
>GPH_ECO57 (P58422) Phosphoglycolate phosphatase (EC 3.1.3.18) (PGPase) (PGP)| Length = 252 Score = 29.3 bits (64), Expect = 6.8 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = -1 Query: 483 KPNIDAMLHALKLADINPQTTIFFDDSVRNIQAGKQIGMHTV 358 KP+ D +L + I PQ +F DS +IQA K G +V Sbjct: 167 KPHPDPLLLVAERMGIAPQQMLFVGDSRNDIQAAKAAGCPSV 208
>NFM_RAT (P12839) Neurofilament triplet M protein (160 kDa neurofilament| protein) (Neurofilament medium polypeptide) (NF-M) Length = 845 Score = 28.9 bits (63), Expect = 8.9 Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 10/96 (10%) Frame = -1 Query: 474 IDAMLHALKLADIN-PQTTIFFDDSVRNIQAGKQIGMHTVLVGTSERIKGADHALESLHN 298 I+A +HAL+ + Q +D +R ++A ++ H ++ +DH E +H Sbjct: 127 IEAEIHALRQKQASHAQLGDAYDQEIRELRATLEMVNHE----KAQVQLDSDHLEEDIHR 182 Query: 297 MKEAF---------PELWVEAVKDEDVRNSSKVGIE 217 +KE F E + AV+ +D+ SS V +E Sbjct: 183 LKERFEEEARLRDDTEAAIRAVR-KDIEESSMVKVE 217
>METK_METKA (Q8TV85) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine| adenosyltransferase) (AdoMet synthetase) Length = 397 Score = 28.9 bits (63), Expect = 8.9 Identities = 19/90 (21%), Positives = 36/90 (40%) Frame = -1 Query: 411 DDSVRNIQAGKQIGMHTVLVGTSERIKGADHALESLHNMKEAFPELWVEAVKDEDVRNSS 232 D V ++ +I + S+RI DH + + +++ +L E D DV Sbjct: 196 DVKVMALREDNKIELTVAAAMVSQRIDDIDHYISVVEELRDRVADLAAEIASDHDV---- 251 Query: 231 KVGIETSVIA*NPHEVHMGQAYHYQKQSMH 142 EVH+ A Y+++S++ Sbjct: 252 --------------EVHVNTADDYERESVY 267 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,495,354 Number of Sequences: 219361 Number of extensions: 1522058 Number of successful extensions: 4252 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 4160 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4250 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3927707336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
