ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart31b04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ606029.1| Triticum aestivum partial mRNA for putative ripe... 517 e-143
2dbj|AK103593.1| Oryza sativa (japonica cultivar-group) cDNA clon... 216 5e-53
3ref|NM_189475.1| Oryza sativa (japonica cultivar-group), predic... 208 1e-50
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 137 4e-29
5dbj|AP003298.3| Oryza sativa (japonica cultivar-group) genomic D... 137 4e-29
6dbj|AP003277.2| Oryza sativa (japonica cultivar-group) genomic D... 137 4e-29
7gb|AY105377.1| Zea mays PCO061803 mRNA sequence 131 2e-27
8gb|AY106832.1| Zea mays PCO074808 mRNA sequence 48 0.029
9emb|AL928957.9| Mouse DNA sequence from clone RP23-75E19 on chro... 46 0.11
10gb|AC112139.31| Mus musculus strain C57BL/6J clone rp23-170m6 ma... 42 1.8
11ref|NM_008309.2| Mus musculus 5-hydroxytryptamine (serotonin) re... 42 1.8
12gb|AC182734.3| Pan troglodytes BAC clone CH251-356H17 from chrom... 42 1.8
13dbj|AK082016.1| Mus musculus 16 days embryo head cDNA, RIKEN ful... 42 1.8
14gb|AC098800.3| Homo sapiens BAC clone RP11-666P13 from 2, comple... 42 1.8
15gb|AC141644.6| Mus musculus BAC clone RP23-115F21 from chromosom... 42 1.8
16emb|AL670673.15| Mouse DNA sequence from clone RP23-32L5 on chro... 42 1.8
17ref|XM_520804.1| PREDICTED: Pan troglodytes similar to hypotheti... 40 7.0
18gb|CP000081.1| Leishmania major chromosome 35, complete sequence 40 7.0
19ref|XM_838083.1| Leishmania major strain Friedlin hypothetical p... 40 7.0
20emb|Z72510.1|CEF53B7 Caenorhabditis elegans Cosmid F53B7, comple... 40 7.0
21gb|AC098882.3| Mus musculus BAC clone RP23-122D13 from 12, compl... 40 7.0
22gb|AC092383.4| Homo sapiens chromosome 16 clone RP11-787D11, com... 40 7.0
23gb|AC110178.6| Mus musculus chromosome 16, clone RP24-398M18, co... 40 7.0
24gb|AC159211.2| Mus musculus BAC clone RP23-33F21 from chromosome... 40 7.0
25dbj|AK093323.1| Homo sapiens cDNA FLJ36004 fis, clone TESTI20153... 40 7.0
26gb|AC106746.2| Homo sapiens chromosome 5 clone RP11-149E17, comp... 40 7.0
27gb|AC022367.34| Homo sapiens 12 BAC RP11-685B13 (Roswell Park Ca... 40 7.0
28dbj|AB168558.1| Macaca fascicularis testis cDNA clone: QtsA-1303... 40 7.0
29ref|NM_073403.1| Caenorhabditis elegans F53B7.4 (F53B7.4) mRNA, ... 40 7.0
30gb|BC037957.1| Homo sapiens likely ortholog of mouse Pas1 candid... 40 7.0
31ref|NM_152590.1| Homo sapiens likely ortholog of mouse Pas1 cand... 40 7.0
32gb|AC079404.5| Homo sapiens BAC clone RP11-1146E4 from 2, comple... 40 7.0
33gb|AC099508.3| Homo sapiens chromosome 16 clone RP11-252E2, comp... 40 7.0
34dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 7.0
35emb|BX571767.3| Mouse DNA sequence from clone RP23-156F8 on chro... 40 7.0
36gb|AC004592.1|AC004592 Homo sapiens PAC clone RP1-244J5 from 5q3... 40 7.0
37emb|CT030690.6| Mouse DNA sequence from clone RP23-65J10 on chro... 40 7.0
38emb|BX001057.4| Zebrafish DNA sequence from clone CH211-89G13 in... 40 7.0
39emb|CT030164.9| Mouse DNA sequence from clone RP23-311P8 on chro... 40 7.0
40gb|L81723.1|HSL81723 Homo sapiens (subclone 2_g4 from P1 H69) DN... 40 7.0 
>emb|AJ606029.1| Triticum aestivum partial mRNA for putative ripening-related
           protein (grip21 gene)
          Length = 439

 Score =  517 bits (261), Expect = e-143
 Identities = 315/333 (94%)
 Strand = Plus / Minus

                                                                       
Query: 187 ttcatgaggatttcacgcgatcaccgatgtctcgattccgactttgctcgagttcctgac 246
           |||| |||||||| |||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 405 ttcacgaggattttacgcgatcactgatgtctcgattccaactttgctcgagttcctgac 346

                                                                       
Query: 247 gtcctcgtccttcacagcctccacccatagttcaggaaacgcctccttcatgttgtgaag 306
            ||||| |||||||||||||||||||| ||||| ||||| || |||||||||||||||||
Sbjct: 345 atcctcatccttcacagcctccacccacagttccggaaatgcttccttcatgttgtgaag 286

                                                                       
Query: 307 gctctccaaggcatggtcagcgcctttaatcctttcagaggttccaaccaggacagtgtg 366
           ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 285 gctctccaaggcatggtcagcacctttaatcctttcagaagttccaaccaggacagtgtg 226

                                                                       
Query: 367 cattccaatctgcttcccggcctgtatgttcctgacgctgtcatcgaaaaatatagtagt 426
           |||||| ||||||||||| || || |||||||||||||||||||||||||||||||||||
Sbjct: 225 cattccgatctgcttcccagcttggatgttcctgacgctgtcatcgaaaaatatagtagt 166

                                                                       
Query: 427 ctgaggattgatgtcggcaagcttgagggcatgcagcattgcatctatgttcggtttgca 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 165 ctgaggattgatgtcggcaagcttgagggcatgcagcattgcatctatgtttggtttgca 106

                                            
Query: 487 caggattggtgatcttggcagctcaaccccagg 519
           |||||||||||| ||||||||||||||||||||
Sbjct: 105 caggattggtgaccttggcagctcaaccccagg 73
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>dbj|AK103593.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133D12, full
            insert sequence
          Length = 1303

 Score =  216 bits (109), Expect = 5e-53
 Identities = 265/317 (83%)
 Strand = Plus / Minus

                                                                        
Query: 203  gcgatcaccgatgtctcgattccgactttgctcgagttcctgacgtcctcgtccttcaca 262
            |||||||| |||||||| |||||||||||||| || |||||||| ||||| |||||||||
Sbjct: 1092 gcgatcacagatgtctcaattccgactttgcttgacttcctgacatcctcatccttcaca 1033

                                                                        
Query: 263  gcctccacccatagttcaggaaacgcctccttcatgttgtgaaggctctccaaggcatgg 322
            || ||  |||| || ||||| || || |||||||||||||||||||| ||||| ||||||
Sbjct: 1032 gcttcatcccacagctcaggcaatgcttccttcatgttgtgaaggctttccaacgcatgg 973

                                                                        
Query: 323  tcagcgcctttaatcctttcagaggttccaaccaggacagtgtgcattccaatctgcttc 382
            ||||| || || || |||||||| ||||||||||||||||| | |||||| ||  |||||
Sbjct: 972  tcagcaccctttattctttcagaagttccaaccaggacagtatacattcctattagcttc 913

                                                                        
Query: 383  ccggcctgtatgttcctgacgctgtcatcgaaaaatatagtagtctgaggattgatgtcg 442
             | ||||| ||||||||| |||||||||| || ||||| |  ||||  |||||||||  |
Sbjct: 912  gcagcctggatgttcctggcgctgtcatcaaacaatatcgatgtcttcggattgatggag 853

                                                                        
Query: 443  gcaagcttgagggcatgcagcattgcatctatgttcggtttgcacaggattggtgatctt 502
            |||| |||||| || ||| |||| |||||||| || || |||||||||||||| ||  ||
Sbjct: 852  gcaaccttgagagcttgccgcatggcatctatatttggcttgcacaggattggcgacttt 793

                             
Query: 503  ggcagctcaaccccagg 519
            || || |||||||||||
Sbjct: 792  ggtagttcaaccccagg 776
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>ref|NM_189475.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 777

 Score =  208 bits (105), Expect = 1e-50
 Identities = 246/293 (83%)
 Strand = Plus / Minus

                                                                       
Query: 203 gcgatcaccgatgtctcgattccgactttgctcgagttcctgacgtcctcgtccttcaca 262
           |||||||| |||||||| |||||||||||||| || |||||||| ||||| |||||||||
Sbjct: 773 gcgatcacagatgtctcaattccgactttgcttgacttcctgacatcctcatccttcaca 714

                                                                       
Query: 263 gcctccacccatagttcaggaaacgcctccttcatgttgtgaaggctctccaaggcatgg 322
           || ||  |||| || ||||| || || |||||||||||||||||||| ||||| ||||||
Sbjct: 713 gcttcatcccacagctcaggcaatgcttccttcatgttgtgaaggctttccaacgcatgg 654

                                                                       
Query: 323 tcagcgcctttaatcctttcagaggttccaaccaggacagtgtgcattccaatctgcttc 382
           ||||| || || || |||||||| ||||||||||||||||| | |||||| ||  |||||
Sbjct: 653 tcagcaccctttattctttcagaagttccaaccaggacagtatacattcctattagcttc 594

                                                                       
Query: 383 ccggcctgtatgttcctgacgctgtcatcgaaaaatatagtagtctgaggattgatgtcg 442
            | ||||| ||||||||| |||||||||| || ||||| |  ||||  |||||||||  |
Sbjct: 593 gcagcctggatgttcctggcgctgtcatcaaacaatatcgatgtcttcggattgatggag 534

                                                                
Query: 443 gcaagcttgagggcatgcagcattgcatctatgttcggtttgcacaggattgg 495
           |||| |||||| || ||| |||| |||||||| || || ||||||||||||||
Sbjct: 533 gcaaccttgagagcttgccgcatggcatctatatttggcttgcacaggattgg 481
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  137 bits (69), Expect = 4e-29
 Identities = 132/153 (86%)
 Strand = Plus / Minus

                                                                            
Query: 203      gcgatcaccgatgtctcgattccgactttgctcgagttcctgacgtcctcgtccttcaca 262
                |||||||| |||||||| |||||||||||||| || |||||||| ||||| |||||||||
Sbjct: 42948775 gcgatcacagatgtctcaattccgactttgcttgacttcctgacatcctcatccttcaca 42948716

                                                                            
Query: 263      gcctccacccatagttcaggaaacgcctccttcatgttgtgaaggctctccaaggcatgg 322
                || ||  |||| || ||||| || || |||||||||||||||||||| ||||| ||||||
Sbjct: 42948715 gcttcatcccacagctcaggcaatgcttccttcatgttgtgaaggctttccaacgcatgg 42948656

                                                 
Query: 323      tcagcgcctttaatcctttcagaggttccaacc 355
                ||||| || || || |||||||| |||||||||
Sbjct: 42948655 tcagcaccctttattctttcagaagttccaacc 42948623



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 74/89 (83%)
 Strand = Plus / Minus

                                                                            
Query: 431      ggattgatgtcggcaagcttgagggcatgcagcattgcatctatgttcggtttgcacagg 490
                |||||||||  ||||| |||||| || ||| |||| |||||||| || || |||||||||
Sbjct: 42948363 ggattgatggaggcaaccttgagagcttgccgcatggcatctatatttggcttgcacagg 42948304

                                             
Query: 491      attggtgatcttggcagctcaaccccagg 519
                ||||| ||  |||| || |||||||||||
Sbjct: 42948303 attggcgactttggtagttcaaccccagg 42948275



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                            
Query: 353      accaggacagtgtgcattccaatctgcttcccggcctgtatgttcctgacgctgtcatcg 412
                ||||||||||| | |||||| ||  ||||| | ||||| ||||||||| |||||||||| 
Sbjct: 42948537 accaggacagtatacattcctattagcttcgcagcctggatgttcctggcgctgtcatca 42948478

                        
Query: 413      aaaaatat 420
                || |||||
Sbjct: 42948477 aacaatat 42948470
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>dbj|AP003298.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0698H10
          Length = 153449

 Score =  137 bits (69), Expect = 4e-29
 Identities = 132/153 (86%)
 Strand = Plus / Minus

                                                                         
Query: 203   gcgatcaccgatgtctcgattccgactttgctcgagttcctgacgtcctcgtccttcaca 262
             |||||||| |||||||| |||||||||||||| || |||||||| ||||| |||||||||
Sbjct: 49654 gcgatcacagatgtctcaattccgactttgcttgacttcctgacatcctcatccttcaca 49595

                                                                         
Query: 263   gcctccacccatagttcaggaaacgcctccttcatgttgtgaaggctctccaaggcatgg 322
             || ||  |||| || ||||| || || |||||||||||||||||||| ||||| ||||||
Sbjct: 49594 gcttcatcccacagctcaggcaatgcttccttcatgttgtgaaggctttccaacgcatgg 49535

                                              
Query: 323   tcagcgcctttaatcctttcagaggttccaacc 355
             ||||| || || || |||||||| |||||||||
Sbjct: 49534 tcagcaccctttattctttcagaagttccaacc 49502



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 74/89 (83%)
 Strand = Plus / Minus

                                                                         
Query: 431   ggattgatgtcggcaagcttgagggcatgcagcattgcatctatgttcggtttgcacagg 490
             |||||||||  ||||| |||||| || ||| |||| |||||||| || || |||||||||
Sbjct: 49242 ggattgatggaggcaaccttgagagcttgccgcatggcatctatatttggcttgcacagg 49183

                                          
Query: 491   attggtgatcttggcagctcaaccccagg 519
             ||||| ||  |||| || |||||||||||
Sbjct: 49182 attggcgactttggtagttcaaccccagg 49154



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                         
Query: 353   accaggacagtgtgcattccaatctgcttcccggcctgtatgttcctgacgctgtcatcg 412
             ||||||||||| | |||||| ||  ||||| | ||||| ||||||||| |||||||||| 
Sbjct: 49416 accaggacagtatacattcctattagcttcgcagcctggatgttcctggcgctgtcatca 49357

                     
Query: 413   aaaaatat 420
             || |||||
Sbjct: 49356 aacaatat 49349
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>dbj|AP003277.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0518C01
          Length = 173555

 Score =  137 bits (69), Expect = 4e-29
 Identities = 132/153 (86%)
 Strand = Plus / Minus

                                                                          
Query: 203    gcgatcaccgatgtctcgattccgactttgctcgagttcctgacgtcctcgtccttcaca 262
              |||||||| |||||||| |||||||||||||| || |||||||| ||||| |||||||||
Sbjct: 142509 gcgatcacagatgtctcaattccgactttgcttgacttcctgacatcctcatccttcaca 142450

                                                                          
Query: 263    gcctccacccatagttcaggaaacgcctccttcatgttgtgaaggctctccaaggcatgg 322
              || ||  |||| || ||||| || || |||||||||||||||||||| ||||| ||||||
Sbjct: 142449 gcttcatcccacagctcaggcaatgcttccttcatgttgtgaaggctttccaacgcatgg 142390

                                               
Query: 323    tcagcgcctttaatcctttcagaggttccaacc 355
              ||||| || || || |||||||| |||||||||
Sbjct: 142389 tcagcaccctttattctttcagaagttccaacc 142357



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 74/89 (83%)
 Strand = Plus / Minus

                                                                          
Query: 431    ggattgatgtcggcaagcttgagggcatgcagcattgcatctatgttcggtttgcacagg 490
              |||||||||  ||||| |||||| || ||| |||| |||||||| || || |||||||||
Sbjct: 142097 ggattgatggaggcaaccttgagagcttgccgcatggcatctatatttggcttgcacagg 142038

                                           
Query: 491    attggtgatcttggcagctcaaccccagg 519
              ||||| ||  |||| || |||||||||||
Sbjct: 142037 attggcgactttggtagttcaaccccagg 142009



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                          
Query: 353    accaggacagtgtgcattccaatctgcttcccggcctgtatgttcctgacgctgtcatcg 412
              ||||||||||| | |||||| ||  ||||| | ||||| ||||||||| |||||||||| 
Sbjct: 142271 accaggacagtatacattcctattagcttcgcagcctggatgttcctggcgctgtcatca 142212

                      
Query: 413    aaaaatat 420
              || |||||
Sbjct: 142211 aacaatat 142204
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>gb|AY105377.1| Zea mays PCO061803 mRNA sequence
          Length = 679

 Score =  131 bits (66), Expect = 2e-27
 Identities = 218/266 (81%), Gaps = 2/266 (0%)
 Strand = Plus / Minus

                                                                       
Query: 201 acgcgatcaccgatgtctcgattccgactttgctcgagttcctgacgtcctcgtccttca 260
           |||||||||| ||||||||||||||| |||||||||| | ||| || || || |||||| 
Sbjct: 543 acgcgatcacagatgtctcgattccggctttgctcgaat-cctcacatcttcatccttct 485

                                                                       
Query: 261 cagcctccacccatagttcaggaaacgcctccttcatgttgtgaaggctctccaaggcat 320
           |||| ||| |||| || || || |  || |||||||||||||| ||||| ||||||||||
Sbjct: 484 cagcttcctcccacagctccggcagtgcttccttcatgttgtggaggctttccaaggcat 425

                                                                       
Query: 321 ggtcagcgcctttaatcctttcagaggttccaaccaggacagtgtgcattccaatctgct 380
           ||||||| || ||  |||  ||||| |||||||||||||||||   ||||||||| ||||
Sbjct: 424 ggtcagcaccctttttccgctcagatgttccaaccaggacagtacacattccaatttgct 365

                                                                       
Query: 381 tc-ccggcctgtatgttcctgacgctgtcatcgaaaaatatagtagtctgaggattgatg 439
           |  || || |  |||||||||| |||||||||||| |||||||| ||||| ||||| |||
Sbjct: 364 ttgccagcttcaatgttcctgaagctgtcatcgaacaatatagttgtctgtggattaatg 305

                                     
Query: 440 tcggcaagcttgagggcatgcagcat 465
             ||| | |||||| || ||||||||
Sbjct: 304 gaggcgaccttgagagcctgcagcat 279
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>gb|AY106832.1| Zea mays PCO074808 mRNA sequence
          Length = 1378

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 371 ccaatctgcttcccggcctgtatgttcctgacgctgtcatcgaa 414
           |||||||||||||||||||| ||||| |  |||||||| |||||
Sbjct: 836 ccaatctgcttcccggcctggatgttgcgtacgctgtcgtcgaa 793
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>emb|AL928957.9| Mouse DNA sequence from clone RP23-75E19 on chromosome 2, complete
            sequence
          Length = 110685

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 176  cccatgtgcacttcatgaggatt 198
            |||||||||||||||||||||||
Sbjct: 9000 cccatgtgcacttcatgaggatt 9022
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>gb|AC112139.31| Mus musculus strain C57BL/6J clone rp23-170m6 map 6, complete sequence
          Length = 203032

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 48    aaaacataaggaaagtggtat 68
             |||||||||||||||||||||
Sbjct: 66916 aaaacataaggaaagtggtat 66936
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>ref|NM_008309.2| Mus musculus 5-hydroxytryptamine (serotonin) receptor 1D (Htr1d),
            mRNA
          Length = 2908

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 52   cataaggaaagtggtatcagt 72
            |||||||||||||||||||||
Sbjct: 2593 cataaggaaagtggtatcagt 2613
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>gb|AC182734.3| Pan troglodytes BAC clone CH251-356H17 from chromosome 2, complete
              sequence
          Length = 209702

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 143    tgcatagactgcttctgataa 163
              |||||||||||||||||||||
Sbjct: 176976 tgcatagactgcttctgataa 176996
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>dbj|AK082016.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
            library, clone:C130095B09 product:5-HYDROXYTRYPTAMINE 1D
            RECEPTOR (5-HT-1D) (SEROTONIN RECEPTOR), full insert
            sequence
          Length = 2908

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 52   cataaggaaagtggtatcagt 72
            |||||||||||||||||||||
Sbjct: 2593 cataaggaaagtggtatcagt 2613
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>gb|AC098800.3| Homo sapiens BAC clone RP11-666P13 from 2, complete sequence
          Length = 142003

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 143   tgcatagactgcttctgataa 163
             |||||||||||||||||||||
Sbjct: 76216 tgcatagactgcttctgataa 76236
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>gb|AC141644.6| Mus musculus BAC clone RP23-115F21 from chromosome 6, complete sequence
          Length = 187643

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 48     aaaacataaggaaagtggtat 68
              |||||||||||||||||||||
Sbjct: 178064 aaaacataaggaaagtggtat 178084
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>emb|AL670673.15| Mouse DNA sequence from clone RP23-32L5 on chromosome 4, complete
              sequence
          Length = 202412

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 52     cataaggaaagtggtatcagt 72
              |||||||||||||||||||||
Sbjct: 107244 cataaggaaagtggtatcagt 107264
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>ref|XM_520804.1| PREDICTED: Pan troglodytes similar to hypothetical protein FLJ36004
           (LOC465350), mRNA
          Length = 1413

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 475 gttcggtttgcacaggattg 494
           ||||||||||||||||||||
Sbjct: 609 gttcggtttgcacaggattg 590
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>gb|CP000081.1| Leishmania major chromosome 35, complete sequence
          Length = 2090491

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 441    cggcaagcttgagggcatgcagca 464
              |||||||||||| |||||||||||
Sbjct: 315731 cggcaagcttgacggcatgcagca 315754
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>ref|XM_838083.1| Leishmania major strain Friedlin hypothetical protein (LMJ_0999)
            partial mRNA
          Length = 12525

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 441  cggcaagcttgagggcatgcagca 464
            |||||||||||| |||||||||||
Sbjct: 3747 cggcaagcttgacggcatgcagca 3770
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>emb|Z72510.1|CEF53B7 Caenorhabditis elegans Cosmid F53B7, complete sequence
          Length = 35955

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 44    tgggaaaacataaggaaagtggta 67
             |||||||||||||||||| |||||
Sbjct: 31035 tgggaaaacataaggaaattggta 31058
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>gb|AC098882.3| Mus musculus BAC clone RP23-122D13 from 12, complete sequence
          Length = 223130

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 36    tattacagtgggaaaacata 55
             ||||||||||||||||||||
Sbjct: 44779 tattacagtgggaaaacata 44760
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>gb|AC092383.4| Homo sapiens chromosome 16 clone RP11-787D11, complete sequence
          Length = 179677

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    acatttatttcatcttatta 40
             ||||||||||||||||||||
Sbjct: 55942 acatttatttcatcttatta 55923
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>gb|AC110178.6| Mus musculus chromosome 16, clone RP24-398M18, complete sequence
          Length = 167120

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 87    acaacatttcccttgttcta 106
             ||||||||||||||||||||
Sbjct: 92903 acaacatttcccttgttcta 92884
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>gb|AC159211.2| Mus musculus BAC clone RP23-33F21 from chromosome 12, complete sequence
          Length = 201550

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 36     tattacagtgggaaaacata 55
              ||||||||||||||||||||
Sbjct: 138879 tattacagtgggaaaacata 138898
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>dbj|AK093323.1| Homo sapiens cDNA FLJ36004 fis, clone TESTI2015331, weakly similar
           to LAMIN B3
          Length = 1718

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 475 gttcggtttgcacaggattg 494
           ||||||||||||||||||||
Sbjct: 879 gttcggtttgcacaggattg 860
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>gb|AC106746.2| Homo sapiens chromosome 5 clone RP11-149E17, complete sequence
          Length = 179868

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 459    gcagcattgcatctatgttc 478
              ||||||||||||||||||||
Sbjct: 160257 gcagcattgcatctatgttc 160238
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>gb|AC022367.34| Homo sapiens 12 BAC RP11-685B13 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 175184

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 475   gttcggtttgcacaggattg 494
             ||||||||||||||||||||
Sbjct: 52158 gttcggtttgcacaggattg 52177
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>dbj|AB168558.1| Macaca fascicularis testis cDNA clone: QtsA-13030, similar to human
            hypothetical protein FLJ36004 (FLJ36004), mRNA, RefSeq:
            NM_152590.1
          Length = 1908

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 475  gttcggtttgcacaggattg 494
            ||||||||||||||||||||
Sbjct: 1064 gttcggtttgcacaggattg 1045
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>ref|NM_073403.1| Caenorhabditis elegans F53B7.4 (F53B7.4) mRNA, complete cds
          Length = 1101

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 44  tgggaaaacataaggaaagtggta 67
           |||||||||||||||||| |||||
Sbjct: 221 tgggaaaacataaggaaattggta 198
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>gb|BC037957.1| Homo sapiens likely ortholog of mouse Pas1 candidate 1, mRNA (cDNA
           clone MGC:46346 IMAGE:5744078), complete cds
          Length = 1772

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 475 gttcggtttgcacaggattg 494
           ||||||||||||||||||||
Sbjct: 918 gttcggtttgcacaggattg 899
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>ref|NM_152590.1| Homo sapiens likely ortholog of mouse Pas1 candidate 1 (FLJ36004),
           mRNA
          Length = 1718

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 475 gttcggtttgcacaggattg 494
           ||||||||||||||||||||
Sbjct: 879 gttcggtttgcacaggattg 860
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>gb|AC079404.5| Homo sapiens BAC clone RP11-1146E4 from 2, complete sequence
          Length = 74470

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 15   tccagaacatttatttcatcttat 38
            ||||||||||||||||||| ||||
Sbjct: 3033 tccagaacatttatttcattttat 3056
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>gb|AC099508.3| Homo sapiens chromosome 16 clone RP11-252E2, complete sequence
          Length = 162291

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    acatttatttcatcttatta 40
             ||||||||||||||||||||
Sbjct: 19439 acatttatttcatcttatta 19458
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 289     ctccttcatgttgtgaaggc 308
               ||||||||||||||||||||
Sbjct: 6696732 ctccttcatgttgtgaaggc 6696713
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>emb|BX571767.3| Mouse DNA sequence from clone RP23-156F8 on chromosome X, complete
             sequence
          Length = 25748

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 18    agaacatttatttcatctta 37
             ||||||||||||||||||||
Sbjct: 20874 agaacatttatttcatctta 20893
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>gb|AC004592.1|AC004592 Homo sapiens PAC clone RP1-244J5 from 5q31, complete sequence
          Length = 130513

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 459  gcagcattgcatctatgttc 478
            ||||||||||||||||||||
Sbjct: 3461 gcagcattgcatctatgttc 3480
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>emb|CT030690.6| Mouse DNA sequence from clone RP23-65J10 on chromosome 16, complete
              sequence
          Length = 220861

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 87     acaacatttcccttgttcta 106
              ||||||||||||||||||||
Sbjct: 139627 acaacatttcccttgttcta 139646
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>emb|BX001057.4| Zebrafish DNA sequence from clone CH211-89G13 in linkage group 1,
             complete sequence
          Length = 179685

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 31    catcttattacagtgggaaaacat 54
             |||||||||||||||| |||||||
Sbjct: 78524 catcttattacagtggcaaaacat 78547
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>emb|CT030164.9| Mouse DNA sequence from clone RP23-311P8 on chromosome 12, complete
              sequence
          Length = 224188

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 36     tattacagtgggaaaacata 55
              ||||||||||||||||||||
Sbjct: 223982 tattacagtgggaaaacata 223963
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>gb|L81723.1|HSL81723 Homo sapiens (subclone 2_g4 from P1 H69) DNA sequence, complete
            sequence
          Length = 3578

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 459  gcagcattgcatctatgttc 478
            ||||||||||||||||||||
Sbjct: 1264 gcagcattgcatctatgttc 1283


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,345,138
Number of Sequences: 3902068
Number of extensions: 4345138
Number of successful extensions: 80731
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80634
Number of HSP's gapped (non-prelim): 97
length of query: 519
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 496
effective length of database: 17,143,297,704
effective search space: 8503075661184
effective search space used: 8503075661184
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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