ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart31b03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AB219525.1| Hordeum vulgare HvPIP2;4 mRNA for PIP aquaporin ... 654 0.0
2gb|AC116395.21| Mus musculus chromosome 14, clone RP23-106K9, co... 42 1.3
3emb|AL139041.17| Human DNA sequence from clone RP11-408O19 on ch... 42 1.3
4emb|CT025527.7| Mouse DNA sequence from clone RP23-279J20 on chr... 40 5.0
5tpg|BK003523.1| TPA: TPA_inf: Drosophila melanogaster HDC02994 (... 40 5.0
6dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, co... 40 5.0
7gb|AC092643.2| Homo sapiens BAC clone RP11-393P9 from 4, complet... 40 5.0
8gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete... 40 5.0
9gb|AC160646.2| Gallus gallus BAC clone CH261-24P2 from chromosom... 40 5.0
10gb|AC009202.7| Drosophila melanogaster, chromosome 2L, region 36... 40 5.0
11gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, co... 40 5.0
12gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, compl... 40 5.0
13dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic... 40 5.0
14gb|AC115004.14| Mus musculus chromosome 3, clone RP24-182K13, co... 40 5.0
15gb|AC011662.1|AC011662 Drosophila melanogaster, chromosome 2L, r... 40 5.0
16gb|AE003656.2| Drosophila melanogaster chromosome 2L, section 65... 40 5.0
17emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA2... 40 5.0
18emb|AL732627.14| Mouse DNA sequence from clone RP23-183L6 on chr... 40 5.0
19gb|AC164108.2| Mus musculus BAC clone RP24-96K15 from chromosome... 40 5.0

>dbj|AB219525.1| Hordeum vulgare HvPIP2;4 mRNA for PIP aquaporin isoform, complete cds
          Length = 1343

 Score =  654 bits (330), Expect = 0.0
 Identities = 352/358 (98%), Gaps = 1/358 (0%)
 Strand = Plus / Minus

                                                                        
Query: 22   tttcatcagatttgctggtagggacgtatgcttgggagtaagaaacaagcaatcagctca 81
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1287 tttcatcagatttgctggtagggacgtatgcttgggagtaagaaacaagcaatcagctca 1228

                                                                        
Query: 82   caaaccgaaccgtacgtacacattgcatttcaaatttcccccc-aagttacctggatgcg 140
            | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1227 cgaaccgaaccgtacgtacacattgcatttcaaatttcccccccaagttacctggatgcg 1168

                                                                        
Query: 141  tacatgacatgacagtacaccatcctcatcattcataaacattacatggaagcaaacact 200
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1167 tacatgacatgacagtacatcatcctcatcattcataaacattacatggaagcaaacact 1108

                                                                        
Query: 201  gactgacgaagacacactcgatcggtagagaaaacaagcagcaagcgcgggcggcgagcc 260
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 1107 gactgacgaagacacactcgatcggtagagaaaacaagcagcaagcgcgggcggcgagca 1048

                                                                        
Query: 261  gaggaaagcagaggcgcgcgcaaagaccagcagaatccagggaccccaacggaggcccct 320
            ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1047 gaggaaagcagagacgcgcgcaaagaccagcagaatccagggacccgaacggaggcccct 988

                                                                      
Query: 321  ctgtcctctgccatatctacagttcatacgcctccgaccatctagcggctgccgaagg 378
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987  ctgtcctctgccatatctacagttcatacgcctccgaccatctagcggctgccgaagg 930



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>gb|AC116395.21| Mus musculus chromosome 14, clone RP23-106K9, complete sequence
          Length = 218656

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 179    acattacatggaagcaaacac 199
              |||||||||||||||||||||
Sbjct: 152543 acattacatggaagcaaacac 152563



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>emb|AL139041.17| Human DNA sequence from clone RP11-408O19 on chromosome 9p11.2-21
             Contains the 3' end of the gene for a novel protein
             similar to sorting nexin 7 (SNX7), the TSCOT gene for
             thymic stromal co-transporter, a pseudogene similar to Mus
             musculus major urinary proteins and a CpG island, complete
             sequence
          Length = 141659

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 323   gtcctctgccatatctacagt 343
             |||||||||||||||||||||
Sbjct: 70594 gtcctctgccatatctacagt 70574



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>emb|CT025527.7| Mouse DNA sequence from clone RP23-279J20 on chromosome 16, complete
              sequence
          Length = 202976

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 285    gaccagcagaatccagggac 304
              ||||||||||||||||||||
Sbjct: 160045 gaccagcagaatccagggac 160064



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>tpg|BK003523.1| TPA: TPA_inf: Drosophila melanogaster HDC02994 (HDC02994) gene,
            complete cds
          Length = 2573

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 102  cattgcatttcaaatttccc 121
            ||||||||||||||||||||
Sbjct: 1992 cattgcatttcaaatttccc 1973



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>dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome
          Length = 2878529

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 157    acaccatcctcatcattcat 176
              ||||||||||||||||||||
Sbjct: 488233 acaccatcctcatcattcat 488214



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>gb|AC092643.2| Homo sapiens BAC clone RP11-393P9 from 4, complete sequence
          Length = 151902

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 113   aaatttccccccaagttacc 132
             ||||||||||||||||||||
Sbjct: 77542 aaatttccccccaagttacc 77561



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>gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete genome
          Length = 2809422

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 157    acaccatcctcatcattcat 176
              ||||||||||||||||||||
Sbjct: 486621 acaccatcctcatcattcat 486602



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>gb|AC160646.2| Gallus gallus BAC clone CH261-24P2 from chromosome unknown, complete
             sequence
          Length = 212960

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 100   cacattgcatttcaaatttc 119
             ||||||||||||||||||||
Sbjct: 26652 cacattgcatttcaaatttc 26633



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>gb|AC009202.7| Drosophila melanogaster, chromosome 2L, region 36D-36D, BAC clone
              BACR06C11, complete sequence
          Length = 174500

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 102    cattgcatttcaaatttccc 121
              ||||||||||||||||||||
Sbjct: 148936 cattgcatttcaaatttccc 148917



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>gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, complete genome
          Length = 2821361

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 157    acaccatcctcatcattcat 176
              ||||||||||||||||||||
Sbjct: 406295 acaccatcctcatcattcat 406276



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>gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, complete genome
          Length = 2872769

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 157    acaccatcctcatcattcat 176
              ||||||||||||||||||||
Sbjct: 470365 acaccatcctcatcattcat 470346



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>dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome
          Length = 2814816

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 157    acaccatcctcatcattcat 176
              ||||||||||||||||||||
Sbjct: 463718 acaccatcctcatcattcat 463699



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>gb|AC115004.14| Mus musculus chromosome 3, clone RP24-182K13, complete sequence
          Length = 141316

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 285   gaccagcagaatccagggac 304
             ||||||||||||||||||||
Sbjct: 79236 gaccagcagaatccagggac 79217



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>gb|AC011662.1|AC011662 Drosophila melanogaster, chromosome 2L, region 36D-, BAC clones
             BACR01G10 and BACR05I08, complete sequence
          Length = 294942

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 102   cattgcatttcaaatttccc 121
             ||||||||||||||||||||
Sbjct: 16921 cattgcatttcaaatttccc 16902



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>gb|AE003656.2| Drosophila melanogaster chromosome 2L, section 65 of 83 of the complete
              sequence
          Length = 251192

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 102    cattgcatttcaaatttccc 121
              ||||||||||||||||||||
Sbjct: 179433 cattgcatttcaaatttccc 179414



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>emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA252, complete genome
          Length = 2902619

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 157    acaccatcctcatcattcat 176
              ||||||||||||||||||||
Sbjct: 471601 acaccatcctcatcattcat 471582



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>emb|AL732627.14| Mouse DNA sequence from clone RP23-183L6 on chromosome 4, complete
             sequence
          Length = 202365

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 285   gaccagcagaatccagggac 304
             ||||||||||||||||||||
Sbjct: 57930 gaccagcagaatccagggac 57949



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>gb|AC164108.2| Mus musculus BAC clone RP24-96K15 from chromosome 16, complete sequence
          Length = 180800

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 285   gaccagcagaatccagggac 304
             ||||||||||||||||||||
Sbjct: 46705 gaccagcagaatccagggac 46724


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,100,485
Number of Sequences: 3902068
Number of extensions: 3100485
Number of successful extensions: 61954
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61860
Number of HSP's gapped (non-prelim): 93
length of query: 378
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 356
effective length of database: 17,147,199,772
effective search space: 6104403118832
effective search space used: 6104403118832
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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