Clone Name | rbart31b03 |
---|---|
Clone Library Name | barley_pub |
>dbj|AB219525.1| Hordeum vulgare HvPIP2;4 mRNA for PIP aquaporin isoform, complete cds Length = 1343 Score = 654 bits (330), Expect = 0.0 Identities = 352/358 (98%), Gaps = 1/358 (0%) Strand = Plus / Minus Query: 22 tttcatcagatttgctggtagggacgtatgcttgggagtaagaaacaagcaatcagctca 81 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1287 tttcatcagatttgctggtagggacgtatgcttgggagtaagaaacaagcaatcagctca 1228 Query: 82 caaaccgaaccgtacgtacacattgcatttcaaatttcccccc-aagttacctggatgcg 140 | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 1227 cgaaccgaaccgtacgtacacattgcatttcaaatttcccccccaagttacctggatgcg 1168 Query: 141 tacatgacatgacagtacaccatcctcatcattcataaacattacatggaagcaaacact 200 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 1167 tacatgacatgacagtacatcatcctcatcattcataaacattacatggaagcaaacact 1108 Query: 201 gactgacgaagacacactcgatcggtagagaaaacaagcagcaagcgcgggcggcgagcc 260 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1107 gactgacgaagacacactcgatcggtagagaaaacaagcagcaagcgcgggcggcgagca 1048 Query: 261 gaggaaagcagaggcgcgcgcaaagaccagcagaatccagggaccccaacggaggcccct 320 ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 1047 gaggaaagcagagacgcgcgcaaagaccagcagaatccagggacccgaacggaggcccct 988 Query: 321 ctgtcctctgccatatctacagttcatacgcctccgaccatctagcggctgccgaagg 378 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 987 ctgtcctctgccatatctacagttcatacgcctccgaccatctagcggctgccgaagg 930
>gb|AC116395.21| Mus musculus chromosome 14, clone RP23-106K9, complete sequence Length = 218656 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 179 acattacatggaagcaaacac 199 ||||||||||||||||||||| Sbjct: 152543 acattacatggaagcaaacac 152563
>emb|AL139041.17| Human DNA sequence from clone RP11-408O19 on chromosome 9p11.2-21 Contains the 3' end of the gene for a novel protein similar to sorting nexin 7 (SNX7), the TSCOT gene for thymic stromal co-transporter, a pseudogene similar to Mus musculus major urinary proteins and a CpG island, complete sequence Length = 141659 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 323 gtcctctgccatatctacagt 343 ||||||||||||||||||||| Sbjct: 70594 gtcctctgccatatctacagt 70574
>emb|CT025527.7| Mouse DNA sequence from clone RP23-279J20 on chromosome 16, complete sequence Length = 202976 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 gaccagcagaatccagggac 304 |||||||||||||||||||| Sbjct: 160045 gaccagcagaatccagggac 160064
>tpg|BK003523.1| TPA: TPA_inf: Drosophila melanogaster HDC02994 (HDC02994) gene, complete cds Length = 2573 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 cattgcatttcaaatttccc 121 |||||||||||||||||||| Sbjct: 1992 cattgcatttcaaatttccc 1973
>dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome Length = 2878529 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 acaccatcctcatcattcat 176 |||||||||||||||||||| Sbjct: 488233 acaccatcctcatcattcat 488214
>gb|AC092643.2| Homo sapiens BAC clone RP11-393P9 from 4, complete sequence Length = 151902 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 aaatttccccccaagttacc 132 |||||||||||||||||||| Sbjct: 77542 aaatttccccccaagttacc 77561
>gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete genome Length = 2809422 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 acaccatcctcatcattcat 176 |||||||||||||||||||| Sbjct: 486621 acaccatcctcatcattcat 486602
>gb|AC160646.2| Gallus gallus BAC clone CH261-24P2 from chromosome unknown, complete sequence Length = 212960 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 cacattgcatttcaaatttc 119 |||||||||||||||||||| Sbjct: 26652 cacattgcatttcaaatttc 26633
>gb|AC009202.7| Drosophila melanogaster, chromosome 2L, region 36D-36D, BAC clone BACR06C11, complete sequence Length = 174500 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 cattgcatttcaaatttccc 121 |||||||||||||||||||| Sbjct: 148936 cattgcatttcaaatttccc 148917
>gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, complete genome Length = 2821361 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 acaccatcctcatcattcat 176 |||||||||||||||||||| Sbjct: 406295 acaccatcctcatcattcat 406276
>gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, complete genome Length = 2872769 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 acaccatcctcatcattcat 176 |||||||||||||||||||| Sbjct: 470365 acaccatcctcatcattcat 470346
>dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome Length = 2814816 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 acaccatcctcatcattcat 176 |||||||||||||||||||| Sbjct: 463718 acaccatcctcatcattcat 463699
>gb|AC115004.14| Mus musculus chromosome 3, clone RP24-182K13, complete sequence Length = 141316 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 gaccagcagaatccagggac 304 |||||||||||||||||||| Sbjct: 79236 gaccagcagaatccagggac 79217
>gb|AC011662.1|AC011662 Drosophila melanogaster, chromosome 2L, region 36D-, BAC clones BACR01G10 and BACR05I08, complete sequence Length = 294942 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 cattgcatttcaaatttccc 121 |||||||||||||||||||| Sbjct: 16921 cattgcatttcaaatttccc 16902
>gb|AE003656.2| Drosophila melanogaster chromosome 2L, section 65 of 83 of the complete sequence Length = 251192 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 cattgcatttcaaatttccc 121 |||||||||||||||||||| Sbjct: 179433 cattgcatttcaaatttccc 179414
>emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA252, complete genome Length = 2902619 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 acaccatcctcatcattcat 176 |||||||||||||||||||| Sbjct: 471601 acaccatcctcatcattcat 471582
>emb|AL732627.14| Mouse DNA sequence from clone RP23-183L6 on chromosome 4, complete sequence Length = 202365 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 gaccagcagaatccagggac 304 |||||||||||||||||||| Sbjct: 57930 gaccagcagaatccagggac 57949
>gb|AC164108.2| Mus musculus BAC clone RP24-96K15 from chromosome 16, complete sequence Length = 180800 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 gaccagcagaatccagggac 304 |||||||||||||||||||| Sbjct: 46705 gaccagcagaatccagggac 46724 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,100,485 Number of Sequences: 3902068 Number of extensions: 3100485 Number of successful extensions: 61954 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61860 Number of HSP's gapped (non-prelim): 93 length of query: 378 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 356 effective length of database: 17,147,199,772 effective search space: 6104403118832 effective search space used: 6104403118832 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)