ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart31b02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 44.1 bits (22), Expect = 0.44 Identities = 28/30 (93%) Strand = Plus / Plus Query: 289 gttcttccacctcgtcgacctcgttctcgc 318 ||||||| ||||||||||||| |||||||| Sbjct: 2760563 gttcttcgacctcgtcgaccttgttctcgc 2760592
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 322 catgcgcgtggtggtggtgga 342 ||||||||||||||||||||| Sbjct: 2074901 catgcgcgtggtggtggtgga 2074921
>gb|AC146610.4| Mus musculus BAC clone RP23-68E7 from chromosome 7, complete sequence Length = 218291 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 172 ggttcaggaggcccttgaacc 192 ||||||||||||||||||||| Sbjct: 52487 ggttcaggaggcccttgaacc 52467
>gb|AC122523.5| Mus musculus BAC clone RP24-492N18 from chromosome 7, complete sequence Length = 163841 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 172 ggttcaggaggcccttgaacc 192 ||||||||||||||||||||| Sbjct: 131891 ggttcaggaggcccttgaacc 131871
>emb|BX842577.1| Mycobacterium tuberculosis H37Rv complete genome; segment 6/13 Length = 347496 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 322 catgcgcgtggtggtggtgga 342 ||||||||||||||||||||| Sbjct: 346419 catgcgcgtggtggtggtgga 346439
>emb|BX248340.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 7/14 Length = 291050 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 322 catgcgcgtggtggtggtgga 342 ||||||||||||||||||||| Sbjct: 154028 catgcgcgtggtggtggtgga 154048
>emb|BX510990.32| Zebrafish DNA sequence from clone CH211-67F13 in linkage group 13, complete sequence Length = 210138 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 432 tggcgaaaatggtggcggtggtgga 456 ||||||||||||||| ||||||||| Sbjct: 178482 tggcgaaaatggtgggggtggtgga 178506
>ref|XM_684462.1| PREDICTED: Danio rerio similar to KIAA1522 protein (LOC561062), mRNA Length = 4368 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 432 tggcgaaaatggtggcggtggtgga 456 ||||||||||||||| ||||||||| Sbjct: 2559 tggcgaaaatggtgggggtggtgga 2535
>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome Length = 1751080 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 101 gattaaccaaagtaattaaac 121 ||||||||||||||||||||| Sbjct: 320411 gattaaccaaagtaattaaac 320391
>ref|NM_001017003.2| Xenopus tropicalis hypothetical protein LOC549757 (LOC549757), mRNA Length = 1754 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 cagtacagggaacagattaa 106 |||||||||||||||||||| Sbjct: 533 cagtacagggaacagattaa 552
>gb|AC134922.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0004D06, complete sequence Length = 157547 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 ggcggcggccgccatggctg 248 |||||||||||||||||||| Sbjct: 29333 ggcggcggccgccatggctg 29314
>ref|XM_874176.1| PREDICTED: Bos taurus similar to heterogeneous nuclear ribonucleoprotein A3, transcript variant 8 (LOC506839), mRNA Length = 1377 Score = 40.1 bits (20), Expect = 6.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 425 gtggtggtggcgaaaatggtggcggtggtgga 456 |||||||||| | | ||||||||||||||||| Sbjct: 732 gtggtggtggtggatatggtggcggtggtgga 763
>ref|NM_028735.1| Mus musculus tetratricopeptide repeat domain 21A (ttc21a), mRNA Length = 4187 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 ggaacagcttcatcttcagg 368 |||||||||||||||||||| Sbjct: 795 ggaacagcttcatcttcagg 776
>gb|AC124662.10| Mus musculus chromosome 9, clone RP24-409K22, complete sequence Length = 235471 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 ggaacagcttcatcttcagg 368 |||||||||||||||||||| Sbjct: 36685 ggaacagcttcatcttcagg 36704
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 gcgccggccggcggtacgta 156 |||||||||||||||||||| Sbjct: 472526 gcgccggccggcggtacgta 472507
>gb|AC117245.3| Mus musculus BAC clone RP24-233B16 from 9, complete sequence Length = 177775 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 ggaacagcttcatcttcagg 368 |||||||||||||||||||| Sbjct: 153438 ggaacagcttcatcttcagg 153457
>gb|AC134924.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0076M06, complete sequence Length = 133581 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 ggcggcggccgccatggctg 248 |||||||||||||||||||| Sbjct: 129150 ggcggcggccgccatggctg 129131
>ref|XM_719606.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY00481) partial mRNA Length = 984 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 429 tggtggcgaaaatggtggcg 448 |||||||||||||||||||| Sbjct: 363 tggtggcgaaaatggtggcg 382
>emb|CR383684.7| Zebrafish DNA sequence from clone DKEYP-69E1 in linkage group 3, complete sequence Length = 111124 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 agcttcatcttcaggccttc 373 |||||||||||||||||||| Sbjct: 42077 agcttcatcttcaggccttc 42058
>emb|AL139280.8| Human DNA sequence from clone RP11-195B3 on chromosome 10 Contains a novel gene, complete sequence Length = 45462 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 tccttgtcctgccggtggcc 394 |||||||||||||||||||| Sbjct: 27304 tccttgtcctgccggtggcc 27323
>emb|BX640447.1| Bordetella bronchiseptica strain RB50, complete genome; segment 11/16 Length = 349442 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 ccttgtcctgccggtggccg 395 |||||||||||||||||||| Sbjct: 173188 ccttgtcctgccggtggccg 173207
>emb|BX640428.1| Bordetella parapertussis strain 12822, complete genome; segment 6/14 Length = 348525 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 ccttgtcctgccggtggccg 395 |||||||||||||||||||| Sbjct: 64931 ccttgtcctgccggtggccg 64912
>emb|BX640418.1| Bordetella pertussis strain Tohama I, complete genome; segment 8/12 Length = 349346 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 ccttgtcctgccggtggccg 395 |||||||||||||||||||| Sbjct: 48790 ccttgtcctgccggtggccg 48809
>emb|AL606456.2|OSJN00017 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0017I01, complete sequence Length = 133331 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 ggcggcggccgccatggctg 248 |||||||||||||||||||| Sbjct: 92328 ggcggcggccgccatggctg 92309
>gb|AC091181.8| Homo sapiens chromosome 17, clone RP11-426D19, complete sequence Length = 155923 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 436 gaaaatggtggcggtggtgg 455 |||||||||||||||||||| Sbjct: 72684 gaaaatggtggcggtggtgg 72703
>dbj|AK133304.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4932431P04 product:Hypothetical tetratricopeptide repeat homolog [Mus musculus], full insert sequence Length = 4042 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 ggaacagcttcatcttcagg 368 |||||||||||||||||||| Sbjct: 763 ggaacagcttcatcttcagg 744
>dbj|AK163163.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:A730057N22 product:Hypothetical tetratricopeptide repeat homolog [Mus musculus], full insert sequence Length = 3328 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 ggaacagcttcatcttcagg 368 |||||||||||||||||||| Sbjct: 644 ggaacagcttcatcttcagg 625
>ref|XM_683108.1| PREDICTED: Danio rerio similar to high-mobility group protein 2-like 1 isoform a (LOC559742), mRNA Length = 1887 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 agcttcatcttcaggccttc 373 |||||||||||||||||||| Sbjct: 662 agcttcatcttcaggccttc 643
>dbj|AK015017.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4921538N17 product:hypothetical TPR repeat containing protein, full insert sequence Length = 4126 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 ggaacagcttcatcttcagg 368 |||||||||||||||||||| Sbjct: 751 ggaacagcttcatcttcagg 732
>dbj|AK029952.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4932410I19 product:hypothetical Tetratricopeptide repeat (TPR) structure containing protein, full insert sequence Length = 4187 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 ggaacagcttcatcttcagg 368 |||||||||||||||||||| Sbjct: 795 ggaacagcttcatcttcagg 776
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 ggcggcggccgccatggctg 248 |||||||||||||||||||| Sbjct: 34786769 ggcggcggccgccatggctg 34786750
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 ggcggcggccgccatggctg 248 |||||||||||||||||||| Sbjct: 26327501 ggcggcggccgccatggctg 26327482
>gb|AE004672.1| Pseudomonas aeruginosa PAO1, section 233 of 529 of the complete genome Length = 10855 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 catgcgcgtggtggtggtgg 341 |||||||||||||||||||| Sbjct: 1125 catgcgcgtggtggtggtgg 1106
>dbj|AK120361.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013067O03, full insert sequence Length = 3399 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 ggcggcggccgccatggctg 248 |||||||||||||||||||| Sbjct: 135 ggcggcggccgccatggctg 116
>ref|XM_313005.2| Anopheles gambiae str. PEST ENSANGP00000020427 (ENSANGG00000017938), partial mRNA Length = 573 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 gaacagcttcatcttcaggc 369 |||||||||||||||||||| Sbjct: 78 gaacagcttcatcttcaggc 59
>dbj|AK107890.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-134-E06, full insert sequence Length = 833 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 ggcggcggccgccatggctg 248 |||||||||||||||||||| Sbjct: 126 ggcggcggccgccatggctg 107
>dbj|AK106728.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-H07, full insert sequence Length = 2386 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 ggcggcggccgccatggctg 248 |||||||||||||||||||| Sbjct: 2100 ggcggcggccgccatggctg 2119
>dbj|AK105350.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-A05, full insert sequence Length = 1300 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 ggcggcggccgccatggctg 248 |||||||||||||||||||| Sbjct: 57 ggcggcggccgccatggctg 38
>gb|AY105026.1| Zea mays PCO062519 mRNA sequence Length = 1503 Score = 40.1 bits (20), Expect = 6.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 163 tctagaatcggttcaggaggcccttgaaccag 194 ||||||| ||||||| ||||||||||| |||| Sbjct: 1086 tctagaaccggttcatgaggcccttgatccag 1055
>emb|AL732354.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0901F07, complete sequence Length = 110682 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 ggcggcggccgccatggctg 248 |||||||||||||||||||| Sbjct: 31971 ggcggcggccgccatggctg 31952
>emb|CR762314.2| Xenopus tropicalis finished cDNA, clone TGas109f05 Length = 1754 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 cagtacagggaacagattaa 106 |||||||||||||||||||| Sbjct: 533 cagtacagggaacagattaa 552
>emb|AJ890364.1| Emiliania huxleyi virus 86 isolate EhV86 Length = 407339 Score = 40.1 bits (20), Expect = 6.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 425 gtggtggtggcgaaaatggtggcggtggtgga 456 |||||||||||| | ||||||| ||||||||| Sbjct: 198938 gtggtggtggcggagatggtggtggtggtgga 198969
>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome Length = 5224283 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 329 gtggtggtggtggaaacgtcggaa 352 ||||||||||||||||| |||||| Sbjct: 490189 gtggtggtggtggaaacttcggaa 490166
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 ggcggcggccgccatggctg 248 |||||||||||||||||||| Sbjct: 26641759 ggcggcggccgccatggctg 26641740
>emb|CT027681.7| Mouse DNA sequence from clone RP24-330H24 on chromosome 16, complete sequence Length = 190475 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 cctcgccaagcttcctagcc 287 |||||||||||||||||||| Sbjct: 20391 cctcgccaagcttcctagcc 20372
>dbj|AP006685.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT45M12, TM0378b, complete sequence Length = 86433 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 425 gtggtggtggcgaaaatggtggcggtgg 452 ||||||||||||| |||| ||||||||| Sbjct: 62825 gtggtggtggcgataatgatggcggtgg 62798 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,811,289 Number of Sequences: 3902068 Number of extensions: 3811289 Number of successful extensions: 85308 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 84831 Number of HSP's gapped (non-prelim): 477 length of query: 503 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 481 effective length of database: 17,147,199,772 effective search space: 8247803090332 effective search space used: 8247803090332 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
