>USP9X_MOUSE (P70398) Probable ubiquitin carboxyl-terminal hydrolase FAF-X (EC|
            3.1.2.15) (Ubiquitin thioesterase FAF-X)
            (Ubiquitin-specific-processing protease FAF-X)
            (Deubiquitinating enzyme FAF-X) (Fat facets
            protein-related, X-linked) (Ubiquitin-specif
          Length = 2559

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 208  ASFTYIALDNSPSPPIKSKSATLTRLLSLL 297
            A+F  ++LD  P PPIK + A L +L S++
Sbjct: 2203 ATFMLVSLDEGPGPPIKYQYAELGKLYSVV 2232

>USP9Y_HUMAN (O00507) Probable ubiquitin carboxyl-terminal hydrolase FAF-Y (EC|
            3.1.2.15) (Ubiquitin thioesterase FAF-Y)
            (Ubiquitin-specific-processing protease FAF-Y)
            (Deubiquitinating enzyme FAF-Y) (Fat facets
            protein-related, Y-linked) (Ubiquitin-specif
          Length = 2555

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 208  ASFTYIALDNSPSPPIKSKSATLTRLLSLL 297
            A+F  ++LD  P PPIK + A L +L S++
Sbjct: 2204 ATFMLVSLDEGPGPPIKYQYAELGKLYSVV 2233

>USP9X_HUMAN (Q93008) Probable ubiquitin carboxyl-terminal hydrolase FAF-X (EC|
            3.1.2.15) (Ubiquitin thioesterase FAF-X) (Ubiquitin
            specific-processing protease FAF-X) (Deubiquitinating
            enzyme FAF-X) (Fat facets protein related, X-linked)
            (Ubiquitin-specif
          Length = 2547

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 208  ASFTYIALDNSPSPPIKSKSATLTRLLSLL 297
            A+F  ++LD  P PPIK + A L +L S++
Sbjct: 2196 ATFMLVSLDEGPGPPIKYQYAELGKLYSVV 2225

>MARK3_MOUSE (Q03141) MAP/microtubule affinity-regulating kinase 3 (EC 2.7.11.1)|
           (MPK-10) (ELKL motif kinase 2)
          Length = 753

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +3

Query: 222 HRTGQQSVSSHQKQECYTDKA 284
           H  GQ+SVSS QKQ  Y+D A
Sbjct: 402 HHKGQRSVSSSQKQRRYSDHA 422

>MARK3_RAT (Q8VHF0) MAP/microtubule affinity-regulating kinase 3 (EC 2.7.11.1)|
          Length = 797

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +3

Query: 222 HRTGQQSVSSHQKQECYTDKA 284
           H  GQ+SVSS QKQ  Y+D A
Sbjct: 402 HHKGQRSVSSSQKQRRYSDHA 422

>CDR1_CANAL (P43071) Multidrug resistance protein CDR1|
          Length = 1501

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 311 NGSTKPGRFFYYWGFCPGC 367
           N    PGRFF+YW  C  C
Sbjct: 617 NFRRNPGRFFFYWLMCIWC 635

>ATG2_EMENI (Q5B1T9) Autophagy-related protein 2|
          Length = 2102

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +1

Query: 112 NTSASTSSNKAPTQQNSISLSLA*QPTVKQALASFTYIALDNSPSPPIKSKSA 270
           ++S      K P   ++I L+L  +P V    + FT      SPS P++SKS+
Sbjct: 248 SSSDELHPGKRPISLSAIELALVSEPIVFSNYSQFT---APTSPSSPLRSKSS 297

>CCPR_YEAST (P00431) Cytochrome c peroxidase, mitochondrial precursor (EC|
           1.11.1.5) (CCP)
          Length = 361

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +2

Query: 233 TTVRLLPSKARVLH*QGFYLFS 298
           T VRLLPS  R  H +  YLFS
Sbjct: 3   TAVRLLPSLGRTAHKRSLYLFS 24

>VATF_NEUCR (Q9Y756) Vacuolar ATP synthase subunit F (EC 3.6.3.14) (V-ATPase F|
           subunit) (Vacuolar proton pump F subunit) (V-ATPase 14
           kDa subunit)
          Length = 124

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 44  NETDTHASKAIYDLKLTERNNISI-QVQAHPATRPRH 151
           N+TD  A +A +D   TER +I I  +  H A R RH
Sbjct: 49  NKTDNAAIEAAFDRFTTERKDIGIVLINQHIADRIRH 85

>PLSX_CHLCV (Q821X8) Fatty acid/phospholipid synthesis protein plsX|
          Length = 316

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +1

Query: 199 QALASFTYIALDNSPSPPIKSKSATLTRLLSLLK 300
           + +AS +++A+D+SP   I+ KS+++   L  LK
Sbjct: 61  EIIASESFVAMDDSPLAAIRKKSSSMALGLDYLK 94

>YANB_SCHPO (Q10076) Hypothetical zinc finger protein C3H1.11 in chromosome I|
          Length = 582

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = +3

Query: 228 TGQQSVS----SHQKQECYTDKAFISSQGESSMEAPNQVGFSTTGGSVQ 362
           T QQSV+    S +    Y ++   S +  +SMEA  Q+G   T GS++
Sbjct: 352 TPQQSVTGSYNSGETMSTYLNQTNTSGRSPNSMEATEQIGTIGTDGSMK 400


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,066,213
Number of Sequences: 219361
Number of extensions: 813705
Number of successful extensions: 1879
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1879
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 1407308304
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)