ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart31a10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT018853.1| Zea mays clone EL01N0555H12.d mRNA sequence 50 0.005
2gb|AY106878.1| Zea mays PCO069584 mRNA sequence 50 0.005
3gb|AC163631.5| Mus musculus BAC clone RP23-147B15 from chromosom... 42 1.3
4gb|AC132604.4| Mus musculus BAC clone RP24-80P7 from chromosome ... 42 1.3
5ref|XM_947315.1| Theileria annulata strain Ankara topoisomerase-... 42 1.3
6emb|Z83845.14|HS407F17 Human DNA sequence from clone RP3-407F17 ... 42 1.3
7emb|BX640418.1| Bordetella pertussis strain Tohama I, complete g... 42 1.3
8gb|AC000039.3| Homo sapiens Cosmid Clone p129d11 unknown chromos... 42 1.3
9gb|AC016580.7|AC016580 Homo sapiens chromosome 5 clone CTD-2509J... 42 1.3
10gb|AC008935.8|AC008935 Homo sapiens chromosome 5 clone CTD-2308L... 42 1.3
11gb|AC008873.4|AC008873 Homo sapiens chromosome 5 clone CTD-2199H... 42 1.3
12gb|AF135154.1|AF135154 Bordetella pertussis ferric alcaligin sid... 42 1.3
13emb|AL122126.4|CNS01DT1 Human chromosome 14 DNA sequence BAC R-3... 42 1.3
14gb|AC102525.8| Mus musculus chromosome 8, clone RP24-133K20, com... 40 5.0
15gb|AC124106.10| Mus musculus chromosome 5, clone RP24-299A7, com... 40 5.0
16ref|XM_960548.1| Neurospora crassa OR74A hypothetical protein (N... 40 5.0
17gb|AE006108.1| Pasteurella multocida subsp. multocida str. Pm70 ... 40 5.0
18ref|XM_331708.1| Neurospora crassa OR74A hypothetical protein (N... 40 5.0
19ref|XM_654759.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 5.0
20emb|CR926129.9| Zebrafish DNA sequence from clone DKEY-261J15 in... 40 5.0
21emb|CR339054.14| Zebrafish DNA sequence from clone DKEY-151M22 i... 40 5.0
22ref|XM_737754.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 5.0
23ref|XM_739147.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 5.0
24gb|AC123687.20| Mus musculus chromosome 5, clone RP23-314A12, co... 40 5.0
25emb|AL158196.24| Human DNA sequence from clone RP11-90M2 on chro... 40 5.0
26emb|AL138752.5| Human DNA sequence from clone RP11-3J10 on chrom... 40 5.0
27gb|AY332722.1| Homo sapiens insulin-like growth factor 1 recepto... 40 5.0
28gb|AC090671.5| Homo sapiens 12 BAC RP11-755O11 (Roswell Park Can... 40 5.0
29dbj|AK126527.1| Homo sapiens cDNA FLJ44563 fis, clone UTERU3008917 40 5.0
30gb|AC055807.11| Homo sapiens chromosome 15, clone RP11-262P8, co... 40 5.0
31gb|AC069029.9| Homo sapiens chromosome 15, clone RP11-654A16, co... 40 5.0
32gb|AC058822.6| Homo sapiens BAC clone RP11-809N18 from 4, comple... 40 5.0
33emb|CR390077.1| Gallus gallus finished cDNA, clone ChEST997j11 40 5.0
34gb|AC123753.7| Mus musculus chromosome 5, clone RP24-200E3, comp... 40 5.0
35gb|AC177808.2| Pan troglodytes BAC clone CH251-703A9 from chromo... 40 5.0
36gb|AC104564.11| Homo sapiens chromosome 17, clone RP11-68I3, com... 40 5.0
37gb|AC008526.5|AC008526 Homo sapiens chromosome 5 clone CTC-470C1... 40 5.0
38emb|AJ277636.1|PMU277636 Pasteurella multocida mapB gene 40 5.0
39gb|AC006226.4|AC006226 Homo sapiens chromosome 4 clone C0011C13 ... 40 5.0
40emb|AL954867.12| Zebrafish DNA sequence from clone DKEY-1G17 in ... 40 5.0 
>gb|BT018853.1| Zea mays clone EL01N0555H12.d mRNA sequence
          Length = 1287

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 350 gggttctgtccaggctgctgtggac 374
           |||||||||||||||||||||||||
Sbjct: 907 gggttctgtccaggctgctgtggac 883
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>gb|AY106878.1| Zea mays PCO069584 mRNA sequence
          Length = 718

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 350 gggttctgtccaggctgctgtggac 374
           |||||||||||||||||||||||||
Sbjct: 493 gggttctgtccaggctgctgtggac 469
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>gb|AC163631.5| Mus musculus BAC clone RP23-147B15 from chromosome 13, complete
            sequence
          Length = 211368

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 90   taacagagcgaaataacatctcaat 114
            |||||||| ||||||||||||||||
Sbjct: 1315 taacagagagaaataacatctcaat 1291
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>gb|AC132604.4| Mus musculus BAC clone RP24-80P7 from chromosome 13, complete sequence
          Length = 164377

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 90     taacagagcgaaataacatctcaat 114
              |||||||| ||||||||||||||||
Sbjct: 100350 taacagagagaaataacatctcaat 100326
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>ref|XM_947315.1| Theileria annulata strain Ankara topoisomerase-related
            nucleotidyltransferase (TA12470) partial mRNA
          Length = 1599

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 335  tttttctactactgggggttc 355
            |||||||||||||||||||||
Sbjct: 982  tttttctactactgggggttc 1002
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>emb|Z83845.14|HS407F17 Human DNA sequence from clone RP3-407F17 on chromosome 22q13.1-13.2
           Contains the gene for TAB1 (TAK1 binding protein 1),
           ESTs, STSs, GSSs and two putative CpG islands, complete
           sequence
          Length = 69660

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 3   aacacatgagtaacagcataa 23
           |||||||||||||||||||||
Sbjct: 829 aacacatgagtaacagcataa 849
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>emb|BX640418.1| Bordetella pertussis strain Tohama I, complete genome; segment 8/12
          Length = 349346

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 246    tcctcccatcaaaagcaagag 266
              |||||||||||||||||||||
Sbjct: 175916 tcctcccatcaaaagcaagag 175936
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>gb|AC000039.3| Homo sapiens Cosmid Clone p129d11 unknown chromosomal location,
             complete sequence
          Length = 38381

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 3     aacacatgagtaacagcataa 23
             |||||||||||||||||||||
Sbjct: 26346 aacacatgagtaacagcataa 26366
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>gb|AC016580.7|AC016580 Homo sapiens chromosome 5 clone CTD-2509J24, complete sequence
          Length = 184118

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 270    tacactgacaaggcttttatctctt 294
              ||||| |||||||||||||||||||
Sbjct: 159156 tacacagacaaggcttttatctctt 159180
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>gb|AC008935.8|AC008935 Homo sapiens chromosome 5 clone CTD-2308L13, complete sequence
          Length = 102477

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 270   tacactgacaaggcttttatctctt 294
             ||||| |||||||||||||||||||
Sbjct: 32313 tacacagacaaggcttttatctctt 32289
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>gb|AC008873.4|AC008873 Homo sapiens chromosome 5 clone CTD-2199H11, complete sequence
          Length = 170358

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 270   tacactgacaaggcttttatctctt 294
             ||||| |||||||||||||||||||
Sbjct: 12135 tacacagacaaggcttttatctctt 12159
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>gb|AF135154.1|AF135154 Bordetella pertussis ferric alcaligin siderophore receptor (fauA)
            gene, complete cds; and putative multiple antibiotic
            resistance protein (mar) gene, partial cds
          Length = 2898

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 246  tcctcccatcaaaagcaagag 266
            |||||||||||||||||||||
Sbjct: 1674 tcctcccatcaaaagcaagag 1694
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>emb|AL122126.4|CNS01DT1 Human chromosome 14 DNA sequence BAC R-30H9 of library RPCI-11 from
            chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 150076

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 24   ttcatatcaaagaacgaacaaatgaaaca 52
            ||||||||||| ||| |||||||||||||
Sbjct: 9968 ttcatatcaaaaaacaaacaaatgaaaca 9940
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>gb|AC102525.8| Mus musculus chromosome 8, clone RP24-133K20, complete sequence
          Length = 162463

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 184   caaccaacagttaaacaagc 203
             ||||||||||||||||||||
Sbjct: 42823 caaccaacagttaaacaagc 42804
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>gb|AC124106.10| Mus musculus chromosome 5, clone RP24-299A7, complete sequence
          Length = 167372

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 41    acaaatgaaacagatacccatgca 64
             ||||||||||||||| ||||||||
Sbjct: 17124 acaaatgaaacagatgcccatgca 17147
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>ref|XM_960548.1| Neurospora crassa OR74A hypothetical protein (NCU02510.1) partial
            mRNA
          Length = 5037

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 354  tctgtccaggctgctgtgga 373
            ||||||||||||||||||||
Sbjct: 1240 tctgtccaggctgctgtgga 1221
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>gb|AE006108.1| Pasteurella multocida subsp. multocida str. Pm70 section 75 of 204 of
            the complete genome
          Length = 10903

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 189  aacagttaaacaagctttag 208
            ||||||||||||||||||||
Sbjct: 6559 aacagttaaacaagctttag 6540
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>ref|XM_331708.1| Neurospora crassa OR74A hypothetical protein (NCU02510.1) partial
            mRNA
          Length = 5037

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 354  tctgtccaggctgctgtgga 373
            ||||||||||||||||||||
Sbjct: 1240 tctgtccaggctgctgtgga 1221
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>ref|XM_654759.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN2247.2), mRNA
          Length = 2163

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 183 acaaccaacagttaaacaag 202
           ||||||||||||||||||||
Sbjct: 182 acaaccaacagttaaacaag 201
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>emb|CR926129.9| Zebrafish DNA sequence from clone DKEY-261J15 in linkage group 6,
            complete sequence
          Length = 142272

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 31   caaagaacgaacaaatgaaa 50
            ||||||||||||||||||||
Sbjct: 6172 caaagaacgaacaaatgaaa 6191
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>emb|CR339054.14| Zebrafish DNA sequence from clone DKEY-151M22 in linkage group 23,
              complete sequence
          Length = 184755

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      agaacacatgagtaacagca 20
              ||||||||||||||||||||
Sbjct: 161240 agaacacatgagtaacagca 161221
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>ref|XM_737754.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000116.04.0)
            partial mRNA
          Length = 2508

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 34   agaacgaacaaatgaaacag 53
            ||||||||||||||||||||
Sbjct: 1197 agaacgaacaaatgaaacag 1216
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>ref|XM_739147.1| Plasmodium chabaudi chabaudi hypothetical protein (PC301330.00.0)
            partial mRNA
          Length = 1842

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 34   agaacgaacaaatgaaacag 53
            ||||||||||||||||||||
Sbjct: 1197 agaacgaacaaatgaaacag 1216
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>gb|AC123687.20| Mus musculus chromosome 5, clone RP23-314A12, complete sequence
          Length = 189230

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 41     acaaatgaaacagatacccatgca 64
              ||||||||||||||| ||||||||
Sbjct: 186358 acaaatgaaacagatgcccatgca 186381
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>emb|AL158196.24| Human DNA sequence from clone RP11-90M2 on chromosome 13 Contains gene
             FLJ10956, the gene for HSPC126 protein (DRIP36), a novel
             gene similar to polymerase (RNA) II (DNA directed)
             polypeptide K, 7.0kDa (POLR2K), a novel gene and two CpG
             islands, complete sequence
          Length = 152594

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 280   aggcttttatctcttctcaa 299
             ||||||||||||||||||||
Sbjct: 96128 aggcttttatctcttctcaa 96147
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>emb|AL138752.5| Human DNA sequence from clone RP11-3J10 on chromosome 9p12-13.3 Contains
              the 3' end of the SHB gene for SHB (Src homology 2 domain
              containing) adaptor protein B, the MCART1 gene for
              mitochondrial carrier triple repeat 1 (MGC14836), a novel
              gene, a novel pseudogene, a phosphoribosylaminoimidazole
              carboxylase, phosphoribosylaminoimidazole
              succinocarboxamide synthetase (PAICS) pseudogene, a novel
              gene (MGC10765,FLJ23201), a mitochondrial ribosomal protein
              S10 (MRP-S10, FLJ10567, PNAS-122) (MRPS10) psueodgene, the
              gene for exosome component RRP40, a novel gene (FLJ31455)
              and four CpG islands, complete sequence
          Length = 189271

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 344    tactgggggttctgtccagg 363
              ||||||||||||||||||||
Sbjct: 152824 tactgggggttctgtccagg 152805
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>gb|AY332722.1| Homo sapiens insulin-like growth factor 1 receptor (IGF1R) gene, complete
              cds
          Length = 309626

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      agaacacatgagtaacagca 20
              ||||||||||||||||||||
Sbjct: 175496 agaacacatgagtaacagca 175477
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>gb|AC090671.5| Homo sapiens 12 BAC RP11-755O11 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 186298

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 60    atgcaagcaaagcaatttat 79
             ||||||||||||||||||||
Sbjct: 50145 atgcaagcaaagcaatttat 50164
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>dbj|AK126527.1| Homo sapiens cDNA FLJ44563 fis, clone UTERU3008917
          Length = 3622

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 344 tactgggggttctgtccagg 363
           ||||||||||||||||||||
Sbjct: 296 tactgggggttctgtccagg 277
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>gb|AC055807.11| Homo sapiens chromosome 15, clone RP11-262P8, complete sequence
          Length = 178201

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      agaacacatgagtaacagca 20
              ||||||||||||||||||||
Sbjct: 137686 agaacacatgagtaacagca 137667
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>gb|AC069029.9| Homo sapiens chromosome 15, clone RP11-654A16, complete sequence
          Length = 191018

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      agaacacatgagtaacagca 20
              ||||||||||||||||||||
Sbjct: 161133 agaacacatgagtaacagca 161152
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>gb|AC058822.6| Homo sapiens BAC clone RP11-809N18 from 4, complete sequence
          Length = 170212

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 311    aatggaagcaccaaaccagg 330
              ||||||||||||||||||||
Sbjct: 151128 aatggaagcaccaaaccagg 151109
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>emb|CR390077.1| Gallus gallus finished cDNA, clone ChEST997j11
          Length = 608

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 236 acagtccgtctcctcccatc 255
           ||||||||||||||||||||
Sbjct: 289 acagtccgtctcctcccatc 270
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>gb|AC123753.7| Mus musculus chromosome 5, clone RP24-200E3, complete sequence
          Length = 167457

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 41    acaaatgaaacagatacccatgca 64
             ||||||||||||||| ||||||||
Sbjct: 17124 acaaatgaaacagatgcccatgca 17147
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>gb|AC177808.2| Pan troglodytes BAC clone CH251-703A9 from chromosome unknown, complete
             sequence
          Length = 207792

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 311   aatggaagcaccaaaccagg 330
             ||||||||||||||||||||
Sbjct: 63941 aatggaagcaccaaaccagg 63922
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>gb|AC104564.11| Homo sapiens chromosome 17, clone RP11-68I3, complete sequence
          Length = 173058

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 90    taacagagcgaaataacatctcaa 113
             ||||||||||||| ||||||||||
Sbjct: 73807 taacagagcgaaacaacatctcaa 73830
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>gb|AC008526.5|AC008526 Homo sapiens chromosome 5 clone CTC-470C15, complete sequence
          Length = 168243

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 331   taggtttttctactactggg 350
             ||||||||||||||||||||
Sbjct: 39731 taggtttttctactactggg 39712
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>emb|AJ277636.1|PMU277636 Pasteurella multocida mapB gene
          Length = 8139

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 189  aacagttaaacaagctttag 208
            ||||||||||||||||||||
Sbjct: 4110 aacagttaaacaagctttag 4129
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>gb|AC006226.4|AC006226 Homo sapiens chromosome 4 clone C0011C13 map 4p16, complete sequence
          Length = 162349

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 68    aaagcaatttatgatctgaa 87
             ||||||||||||||||||||
Sbjct: 81082 aaagcaatttatgatctgaa 81063
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>emb|AL954867.12| Zebrafish DNA sequence from clone DKEY-1G17 in linkage group 6, complete
              sequence
          Length = 222787

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 31     caaagaacgaacaaatgaaa 50
              ||||||||||||||||||||
Sbjct: 135781 caaagaacgaacaaatgaaa 135800


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,681,451
Number of Sequences: 3902068
Number of extensions: 3681451
Number of successful extensions: 66032
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65980
Number of HSP's gapped (non-prelim): 52
length of query: 374
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 352
effective length of database: 17,147,199,772
effective search space: 6035814319744
effective search space used: 6035814319744
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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