ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart31a09 |
|---|---|
| Clone Library Name | barley_pub |
>ATG10_HUMAN (Q9H0Y0) Autophagy-related protein 10 (APG10-like)| Length = 220 Score = 81.6 bits (200), Expect = 1e-15 Identities = 40/102 (39%), Positives = 62/102 (60%) Frame = -1 Query: 507 SYKVPVLYFXXXXXXXXXLTLDEIKKDLPSHSLQLLNESKWTFITREEHPHLSRPWFTLH 328 SY+VPVLYF LTL +I + + L + W IT++EHP L +P+F LH Sbjct: 105 SYQVPVLYFRASFLDGRPLTLKDIWEGVHECYKMRLLQGPWDTITQQEHPILGQPFFVLH 164 Query: 327 PCGTSDWMKLLLHKLGDKDRSLQYLSAWLSVVGQAVGLKIPL 202 PC T+++M +L ++++ Y+++WLS+VG VGL +PL Sbjct: 165 PCKTNEFMTPVLKNSQKINKNVNYITSWLSIVGPVVGLNLPL 206
>ATG10_MOUSE (Q8R1P4) Autophagy-related protein 10 (APG10-like) (mAPG10)| Length = 215 Score = 81.6 bits (200), Expect = 1e-15 Identities = 40/102 (39%), Positives = 62/102 (60%) Frame = -1 Query: 507 SYKVPVLYFXXXXXXXXXLTLDEIKKDLPSHSLQLLNESKWTFITREEHPHLSRPWFTLH 328 SY+VPVLYF L L++I + + L + W IT++EHP L +P+F LH Sbjct: 104 SYQVPVLYFRASFLDGRPLALEDIWEGVHECYKPRLLQGPWDTITQQEHPILGQPFFVLH 163 Query: 327 PCGTSDWMKLLLHKLGDKDRSLQYLSAWLSVVGQAVGLKIPL 202 PC T+++M +L +R++ Y+++WLS+VG VGL +PL Sbjct: 164 PCKTNEFMTAVLKNSQKINRNVNYITSWLSLVGPVVGLNLPL 205
>YCF1_OENBE (P31563) Hypothetical protein ycf1 (ORF 1005) (Fragment)| Length = 1005 Score = 30.0 bits (66), Expect = 3.7 Identities = 19/63 (30%), Positives = 32/63 (50%) Frame = -2 Query: 209 SRLSFIAIHRSTLFQYVVVHTIVMWMFPSAMMVSEMGSVHLFLYCFVYVQTFLSIT*PFC 30 +RLS+I I RS V+ + V W+ +++ G V ++L F+ +T IT C Sbjct: 156 TRLSYIYIFRSNNKMLFVLSSFVGWLIGHILVLKWAGLVFVWLLKFIRSKTMKYIT---C 212 Query: 29 NAI 21 N + Sbjct: 213 NVL 215
>ATG3_RAT (Q6AZ50) Autophagy-related protein 3 (APG3-like)| (Preconditioning-inducible gene 1 protein) Length = 314 Score = 29.6 bits (65), Expect = 4.9 Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 4/99 (4%) Frame = -1 Query: 504 YKVPVLYFXXXXXXXXXLTLDEIKKDLPSHSLQLLNESKWTFITREEHPHL-SRPWFTLH 328 Y+ P L+ LT++ + +D+ ++ +T E HPHL P ++H Sbjct: 210 YQTPRLWLFGYDEQRQPLTVEHMYEDISQDHVKKT-------VTIENHPHLPPPPMCSVH 262 Query: 327 PCGTSDWMKLLLHKLGDKDRSL---QYLSAWLSVVGQAV 220 PC ++ MK ++ + + L YL +L V QAV Sbjct: 263 PCRHAEVMKKIIETVAEGGGELGVHMYLLIFLKFV-QAV 300
>ATG3_MOUSE (Q9CPX6) Autophagy-related protein 3 (APG3-like)| Length = 314 Score = 29.6 bits (65), Expect = 4.9 Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 4/99 (4%) Frame = -1 Query: 504 YKVPVLYFXXXXXXXXXLTLDEIKKDLPSHSLQLLNESKWTFITREEHPHL-SRPWFTLH 328 Y+ P L+ LT++ + +D+ ++ +T E HPHL P ++H Sbjct: 210 YQTPRLWLFGYDEQRQPLTVEHMYEDISQDHVKKT-------VTIENHPHLPPPPMCSVH 262 Query: 327 PCGTSDWMKLLLHKLGDKDRSL---QYLSAWLSVVGQAV 220 PC ++ MK ++ + + L YL +L V QAV Sbjct: 263 PCRHAEVMKKIIETVAEGGGELGVHMYLLIFLKFV-QAV 300
>ATG3_HUMAN (Q9NT62) Autophagy-related protein 3 (APG3-like) (hApg3) (Protein| PC3-96) Length = 314 Score = 29.6 bits (65), Expect = 4.9 Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 4/99 (4%) Frame = -1 Query: 504 YKVPVLYFXXXXXXXXXLTLDEIKKDLPSHSLQLLNESKWTFITREEHPHL-SRPWFTLH 328 Y+ P L+ LT++ + +D+ ++ +T E HPHL P ++H Sbjct: 210 YQTPRLWLFGYDEQRQPLTVEHMYEDISQDHVKKT-------VTIENHPHLPPPPMCSVH 262 Query: 327 PCGTSDWMKLLLHKLGDKDRSL---QYLSAWLSVVGQAV 220 PC ++ MK ++ + + L YL +L V QAV Sbjct: 263 PCRHAEVMKKIIETVAEGGGELGVHMYLLIFLKFV-QAV 300
>LECS_SOPJA (P93535) Seed lectin precursor (LECSJASG)| Length = 292 Score = 29.6 bits (65), Expect = 4.9 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 4/37 (10%) Frame = -2 Query: 167 QYVVVHTIVMWMFPSAMMVSEMG----SVHLFLYCFV 69 QYV H ++ W F S + + G +VHL Y F+ Sbjct: 256 QYVETHDVLSWSFTSTLETGDCGAKDDNVHLVSYAFI 292
>ATG3_XENTR (Q5I0S6) Autophagy-related protein 3 (APG3-like)| Length = 312 Score = 29.6 bits (65), Expect = 4.9 Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 4/99 (4%) Frame = -1 Query: 504 YKVPVLYFXXXXXXXXXLTLDEIKKDLPSHSLQLLNESKWTFITREEHPHL-SRPWFTLH 328 Y+ P L+ LT++ + +D+ ++ +T E HPHL P ++H Sbjct: 208 YQTPRLWLFGYDEQRRPLTVENMYEDISQDHVKKT-------VTIENHPHLPPPPMCSVH 260 Query: 327 PCGTSDWMKLLLHKLGDKDRSL---QYLSAWLSVVGQAV 220 PC ++ MK ++ + + L YL +L V QAV Sbjct: 261 PCRHAEVMKKIIETVAEGGGELGVHMYLLIFLKFV-QAV 298
>TGB1_NMV (P15096) TGB1 helicase (EC 3.6.1.-) (Triple gene block 1 protein)| (TGBp1) (25 kDa protein) (ORF 2 protein) Length = 233 Score = 29.3 bits (64), Expect = 6.4 Identities = 17/66 (25%), Positives = 27/66 (40%) Frame = +2 Query: 245 HADKYCRDXXXXXXXXXXNFIQSLVPHGCKVNHGLLRWGCSSRVINVHFDSFNN*SE*EG 424 H + Y D I L+ HGC V WG + V++V+ S + S + Sbjct: 147 HENPYTTDPKGVVVAHEQEVINLLLQHGCPVTPTQHLWGLTIPVVSVYITSIASLSTVDR 206 Query: 425 RSFFIS 442 + F+S Sbjct: 207 ANLFLS 212
>ATG3_XENLA (Q6GQE7) Autophagy-related protein 3 (APG3-like)| Length = 313 Score = 29.3 bits (64), Expect = 6.4 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 4/57 (7%) Frame = -1 Query: 378 ITREEHPHL-SRPWFTLHPCGTSDWMKLLLHKLGDKDRSL---QYLSAWLSVVGQAV 220 +T E HPHL P ++HPC ++ MK ++ + + L YL +L V QAV Sbjct: 244 VTIENHPHLPPPPMCSVHPCRHAEVMKKIIETVAEGGGELGVHMYLLIFLKFV-QAV 299
>AP2_ARATH (P47927) Floral homeotic protein APETALA2| Length = 432 Score = 28.9 bits (63), Expect = 8.3 Identities = 19/58 (32%), Positives = 28/58 (48%) Frame = -1 Query: 384 TFITREEHPHLSRPWFTLHPCGTSDWMKLLLHKLGDKDRSLQYLSAWLSVVGQAVGLK 211 T +T+EE H+ R T P G+S + + LHK G W + +GQ +G K Sbjct: 199 TNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCG----------RWEARMGQFLGKK 246
>CCNE1_RAT (P39949) G1/S-specific cyclin-E1| Length = 396 Score = 28.9 bits (63), Expect = 8.3 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = -2 Query: 170 FQYVVVHTIVMWMFPSAMMVSEMGSVHL 87 +Q+ + V WM P AM++ EMGS L Sbjct: 305 YQWCDIEKCVKWMVPFAMVIREMGSSKL 332
>Y1218_ARCFU (O29050) Hypothetical protein AF1218| Length = 97 Score = 28.9 bits (63), Expect = 8.3 Identities = 20/56 (35%), Positives = 29/56 (51%) Frame = -1 Query: 447 LDEIKKDLPSHSLQLLNESKWTFITREEHPHLSRPWFTLHPCGTSDWMKLLLHKLG 280 L+ K L L++L E K F T E H LSR +++ P G S + L+ +LG Sbjct: 13 LERDKNGLRRELLRVLLEGK-KFTTSEIHDILSRRGYSISPRGVSAMVGLISARLG 67
>CCNE1_MOUSE (Q61457) G1/S-specific cyclin-E1| Length = 491 Score = 28.9 bits (63), Expect = 8.3 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = -2 Query: 170 FQYVVVHTIVMWMFPSAMMVSEMGSVHL 87 +Q+ + V WM P AM++ EMGS L Sbjct: 317 YQWCDIEKCVKWMVPFAMVIREMGSSKL 344 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,202,511 Number of Sequences: 219361 Number of extensions: 1475817 Number of successful extensions: 3450 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3375 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3450 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3696665728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
