>INO80_NEUCR (Q872I5) Putative DNA helicase ino-80 (EC 3.6.1.-)|
          Length = 2001

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 31/98 (31%), Positives = 39/98 (39%), Gaps = 7/98 (7%)
 Frame = -3

Query: 564 LRSGARKTRTRSHPLQSFRAPSP--ASPPTCPGCARS**S*SMLLHHT*CSLLQPLWLKK 391
           LRS  R+     HPL S   P+P  ASPPT    A +  + + L      S   P     
Sbjct: 105 LRSPTREPSEYRHPLSSLATPAPFAASPPTSIANANNTNNNNALGAAGSLSSQPPPPPPT 164

Query: 390 APRRV-----PKTAHQPQQMEPSNLQRAKKYPPTAPPP 292
            PR +     P   HQ Q   P+    A    P+ PPP
Sbjct: 165 GPRSILNPPTPSQQHQQQHHHPNPFVAAS--APSLPPP 200

>TPM4_DROME (P49455) Tropomyosin 1, isoforms 33/34 (Tropomyosin II)|
          Length = 518

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = -2

Query: 400 AKEGTKEGAKDGAPAPANGAKQPAESKEVPANG 302
           A EG    A +GA  PA GA  PAE    PA+G
Sbjct: 407 AAEGEAAPAAEGAAPPAEGAAPPAEGAVPPADG 439

>COMP_RAT (P35444) Cartilage oligomeric matrix protein precursor (COMP)|
          Length = 755

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -1

Query: 350 KWSQA--TCREQRSTRQRPRHRDGEGAACXXXXXXSRV 243
           KW  A   CR Q++  Q+   RDG+G AC       R+
Sbjct: 341 KWGDACDNCRSQKNDDQKDTDRDGQGDACDDDIDGDRI 378

>SP96_DICDI (P14328) Spore coat protein SP96|
          Length = 600

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 21/69 (30%), Positives = 27/69 (39%)
 Frame = -1

Query: 539 GQEAIHCSHSGPQARQAHRPVPDAPGPSEAEACSSTTHDAASSSPXXXXXXXXXXXXXRT 360
           G  A+  S SG  A  +         PS + A SS +  AASSSP              +
Sbjct: 442 GSSAVSSSASGSSAASS--------SPSSSAASSSPSSSAASSSPSSSAASSSPSSSASS 493

Query: 359 SPSKWSQAT 333
           S S  S A+
Sbjct: 494 SSSPSSSAS 502

>PACC_ASPGI (Q5XL24) pH-response transcription factor pacC/RIM101|
          Length = 678

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 25/92 (27%), Positives = 29/92 (31%), Gaps = 8/92 (8%)
 Frame = -1

Query: 536 QEAIHCSHSGPQARQAHRPVPDAPGPSEAEACSS--------TTHDAASSSPXXXXXXXX 381
           Q   H  H G   R  H P    P PS A A +S         TH  ++ +P        
Sbjct: 374 QPGAHYVHGGMSYRTTHSPPSQLP-PSHATATTSAATMMSHPATHSPSTGTPALTPPSSA 432

Query: 380 XXXXXRTSPSKWSQATCREQRSTRQRPRHRDG 285
                  SP   S A        R  P H DG
Sbjct: 433 QSYTSGRSPISMSSA-------HRVSPPHHDG 457

>COMP_BOVIN (P35445) Cartilage oligomeric matrix protein (COMP) (Fragment)|
          Length = 439

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = -1

Query: 362 TSPSKWSQA--TCREQRSTRQRPRHRDGEGAACXXXXXXSRV 243
           T   KW  A   CR Q++  Q+   +DG G AC       R+
Sbjct: 21  TDGDKWGDACDNCRSQKNDDQKDTDKDGRGDACDDDIDGDRI 62

>COMP_HUMAN (P49747) Cartilage oligomeric matrix protein precursor (COMP)|
          Length = 757

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = -1

Query: 362 TSPSKWSQA--TCREQRSTRQRPRHRDGEGAACXXXXXXSRV 243
           T   KW  A   CR Q++  Q+   +DG G AC       R+
Sbjct: 339 TDEDKWGDACDNCRSQKNDDQKDTDQDGRGDACDDDIDGDRI 380

>BRD4_MOUSE (Q9ESU6) Bromodomain-containing protein 4 (Mitotic|
           chromosome-associated protein) (MCAP)
          Length = 1400

 Score = 23.9 bits (50), Expect(2) = 7.2
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -3

Query: 387 PRRVPKTAHQPQQMEPSNLQRAKKYPPTAPP 295
           P++ P    QP    P   Q+ +  PP  PP
Sbjct: 755 PQQPPPPPQQPPPPPPPQQQQQQPPPPPPPP 785



 Score = 23.9 bits (50), Expect(2) = 7.2
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 524 HCSHSGPQARQAHRPVPDAPGP 459
           H  H  PQ + A  PVP  P P
Sbjct: 739 HHHHHHPQMQPAPAPVPQQPPP 760

>VPS64_YEAST (Q03944) Vacuolar protein sorting protein 64 (Factor arrest protein|
           9)
          Length = 604

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 399 LKKAPRRVPKTAHQPQQMEPSNLQRAKKYPPTAPP 295
           L+K  R  P+  H P   + SN Q   K P T+PP
Sbjct: 4   LEKRRRPPPQLQHSPYVRDQSNSQGMTKTPETSPP 38

>EBNA4_EBV (P03203) Epstein-Barr nuclear antigen 4 (EBV nuclear antigen 4)|
           (EBNA-4) (EBNA-3B)
          Length = 938

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 22/73 (30%), Positives = 26/73 (35%)
 Frame = -3

Query: 510 RAPSPASPPTCPGCARS**S*SMLLHHT*CSLLQPLWLKKAPRRVPKTAHQPQQMEPSNL 331
           RAP+P SPP  P   R                       + PR  P T   P Q+ P   
Sbjct: 699 RAPTPMSPPEVPPVPR-----------------------QRPRGAP-TPTPPPQVPPVPR 734

Query: 330 QRAKKYPPTAPPP 292
           QR +  P   PPP
Sbjct: 735 QRPRGAPTPTPPP 747

>WBS18_HUMAN (Q96LL9) Williams-Beuren syndrome chromosome region 18 protein|
          Length = 226

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 509 GPQARQAHRPVPDAPGPSEAEACSSTTHDAASSSP 405
           GP  R +  P PD PG       +S THD + +SP
Sbjct: 122 GPGVRPSRTPAPD-PGSPRTPPPTSRTHDGSRASP 155


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,173,964
Number of Sequences: 219361
Number of extensions: 1473083
Number of successful extensions: 6519
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6482
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4700377760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)