ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart31a04 |
|---|---|
| Clone Library Name | barley_pub |
>BGLX_SALTY (Q56078) Periplasmic beta-glucosidase precursor (EC 3.2.1.21)| (Gentiobiase) (Cellobiase) (Beta-D-glucoside glucohydrolase) (T-cell inhibitor) Length = 765 Score = 53.9 bits (128), Expect = 2e-07 Identities = 33/83 (39%), Positives = 44/83 (53%), Gaps = 22/83 (26%) Frame = -1 Query: 321 DAFVAAWLPGTEG-QGVADVLFGDYGFSGKLARTWFKSVDQLP-----MNVG-------- 184 DA + W GTEG +ADVLFGDY SGKL ++ +SV Q+P +N G Sbjct: 565 DAILETWFAGTEGGNAIADVLFGDYNPSGKLPISFPRSVGQIPVYYSHLNTGRPYNPEKP 624 Query: 183 --------DKHYDPLFPFGFGLT 139 D+ PL+PFG+GL+ Sbjct: 625 NKYTSRYFDEANGPLYPFGYGLS 647
>BGLX_ECOLI (P33363) Periplasmic beta-glucosidase precursor (EC 3.2.1.21)| (Gentiobiase) (Cellobiase) (Beta-D-glucoside glucohydrolase) Length = 765 Score = 51.6 bits (122), Expect = 1e-06 Identities = 32/83 (38%), Positives = 43/83 (51%), Gaps = 22/83 (26%) Frame = -1 Query: 321 DAFVAAWLPGTEG-QGVADVLFGDYGFSGKLARTWFKSVDQLP-----MNVG-------- 184 DA + W GTEG +ADVLFGDY SGKL ++ +SV Q+P +N G Sbjct: 565 DAILETWFAGTEGGNAIADVLFGDYNPSGKLPMSFPRSVGQIPVYYSHLNTGRPYNADKP 624 Query: 183 --------DKHYDPLFPFGFGLT 139 D+ L+PFG+GL+ Sbjct: 625 NKYTSRYFDEANGALYPFGYGLS 647
>BGLS_AGRTU (P27034) Beta-glucosidase (EC 3.2.1.21) (Gentiobiase) (Cellobiase)| (Beta-D-glucoside glucohydrolase) Length = 818 Score = 48.5 bits (114), Expect = 1e-05 Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 28/148 (18%) Frame = -1 Query: 501 DYAIVVIGEPPYAETFG-DSLNLTIPAPGPSVIQTXXXXXXXXXXXXXXXXXXVEPYIGA 325 D ++++G +T G D ++ +P +I+ P++G Sbjct: 544 DIVLLLVGREGEWDTEGLDLPDMRLPGRQEELIEAVAETNPNVVVVLQTGGPIEMPWLGK 603 Query: 324 MDAFVAAWLPGTE-GQGVADVLFGDYGFSGKLARTWFKSVDQLP---------------- 196 + A + W PG E G +ADVLFGD +G+L +T+ K++ Sbjct: 604 VRAVLQMWYPGQELGNALADVLFGDVEPAGRLPQTFPKALTDNSAITDDPSIYPGQDGHV 663 Query: 195 -----MNVGDKHYD-----PLFPFGFGL 142 + VG +H+D PLFPFGFGL Sbjct: 664 RYAEGIFVGYRHHDTREIEPLFPFGFGL 691
>BGLS_KLUMA (P07337) Beta-glucosidase precursor (EC 3.2.1.21) (Gentiobiase)| (Cellobiase) (Beta-D-glucoside glucohydrolase) Length = 845 Score = 48.1 bits (113), Expect = 1e-05 Identities = 41/146 (28%), Positives = 64/146 (43%), Gaps = 24/146 (16%) Frame = -1 Query: 504 YDYAIVVIGEPPYAETFG-DSLNLTIPAPGPSVIQTXXXXXXXXXXXXXXXXXXVEPYIG 328 +D A+++IG ET G D N+ +P +++ P++ Sbjct: 574 HDKAVLIIGLNGEWETEGYDRENMDLPKRTNELVRAVLKANPNTVIVNQSGTPVEFPWLE 633 Query: 327 AMDAFVAAWLPGTE-GQGVADVLFGDYGFSGKLARTW-FKSVDQ---------------- 202 +A V AW G E G +ADVL+GD +GKL+ +W FK D Sbjct: 634 EANALVQAWYGGNELGNAIADVLYGDVVPNGKLSLSWPFKLQDNPAFLNFKTEFGRVVYG 693 Query: 201 LPMNVGDKHYDPL-----FPFGFGLT 139 + VG ++Y+ L FPFG+GL+ Sbjct: 694 EDIFVGYRYYEKLQRKVAFPFGYGLS 719
>BGLS_SCHCO (P29091) Beta-glucosidase (EC 3.2.1.21) (Gentiobiase) (Cellobiase)| (Beta-D-glucoside glucohydrolase) (Fragment) Length = 192 Score = 37.7 bits (86), Expect = 0.018 Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 1/45 (2%) Frame = -1 Query: 318 AFVAAWLPGTE-GQGVADVLFGDYGFSGKLARTWFKSVDQLPMNV 187 A V + LPG E G VAD+L+G Y SG+L T KS D P V Sbjct: 113 AVVWSGLPGQEAGNSVADILYGAYNPSGRLPYTIAKSADDYPAQV 157
>XYNB_PRUPE (P83344) Putative beta-D-xylosidase (EC 3.2.1.-) (PpAz152)| (Fragment) Length = 461 Score = 33.9 bits (76), Expect = 0.26 Identities = 26/81 (32%), Positives = 33/81 (40%), Gaps = 19/81 (23%) Frame = -1 Query: 324 MDAFVAAWLPGTEG-QGVADVLFGDYGFSGKLARTWFKS--VDQLPMNVGDKHYDP---- 166 + A + PG G +A+VLFG GKL TW+ V LPM DP Sbjct: 234 ISAIIWVGYPGQAGGTAIANVLFGTANPGGKLPMTWYPQNYVTHLPMTDMAMRADPARGY 293 Query: 165 ------------LFPFGFGLT 139 +FPFG GL+ Sbjct: 294 PGRTYRFYIGPVVFPFGLGLS 314
>BGLB_CLOTM (P14002) Thermostable beta-glucosidase B (EC 3.2.1.21)| (Gentiobiase) (Cellobiase) (Beta-D-glucoside glucohydrolase) Length = 754 Score = 33.5 bits (75), Expect = 0.33 Identities = 35/144 (24%), Positives = 55/144 (38%), Gaps = 23/144 (15%) Frame = -1 Query: 501 DYAIVVIGEPPYAETFG-DSLNLTIPAPGPSVIQTXXXXXXXXXXXXXXXXXXVEPYIGA 325 D A+V G P E+ G D +++IP +I+ P+I Sbjct: 405 DVAVVFAGLPDEYESEGFDRTHMSIPENQNRLIEAVAEVQSNIVVVLLNGSPVEMPWIDK 464 Query: 324 MDAFVAAWLPGTEGQGVADVLFGDYGFSGKLARTWFKSVDQLP----------------- 196 + + + A+L G G + + GKLA T+ + P Sbjct: 465 VKSVLEAYLGGQALGGRWRMCYSVKSIVGKLAETFPVKLSHNPSYLNFPGEDDRVEYKEG 524 Query: 195 MNVGDKHYD-----PLFPFGFGLT 139 + VG ++YD PLFPFG GL+ Sbjct: 525 LFVGYRYYDTKGIEPLFPFGHGLS 548
>Y2036_BORPE (Q7VWZ5) UPF0225 protein BP2036| Length = 133 Score = 31.2 bits (69), Expect = 1.7 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = -2 Query: 314 SSPRGCPVPRARAWPTCC 261 SSP GCP + RA+P CC Sbjct: 6 SSPAGCPCGKPRAYPDCC 23
>ACSA1_ACEXY (P21877) Cellulose synthase 1 [Includes: Cellulose synthase| catalytic domain [UDP-forming] (EC 2.4.1.12); Cyclic di-GMP-binding domain (Cellulose synthase 1 regulatory domain)] Length = 1550 Score = 31.2 bits (69), Expect = 1.7 Identities = 20/63 (31%), Positives = 24/63 (38%) Frame = +1 Query: 121 SLLGLRGEAKPKGKQRVVVLVADVHRQLVHRLEPRPGQLPGEPVVAEQHVGHALALGTGQ 300 +LL A+ R V A H+ L P P LP A+ G A A G G Sbjct: 747 ALLTFASSAQAASAPRAVAAKAPAHQPEASDLPPLPALLPATSGAAQAGAGDAGANGPGS 806 Query: 301 PRG 309 P G Sbjct: 807 PTG 809
>ACPD_VIBPA (Q87PP9) Putative acyl carrier protein phosphodiesterase (EC| 3.1.4.14) (ACP phosphodiesterase) Length = 194 Score = 30.8 bits (68), Expect = 2.2 Identities = 16/43 (37%), Positives = 22/43 (51%) Frame = -1 Query: 264 LFGDYGFSGKLARTWFKSVDQLPMNVGDKHYDPLFPFGFGLTT 136 + GDY S KL + K+VDQ + V D +PL F + T Sbjct: 11 ILGDYSQSNKLVEDFIKNVDQDKLTVRDLAANPLPVLDFAVAT 53
>RAPE_BACSU (P45943) Response regulator aspartate phosphatase E (EC 3.1.-.-)| Length = 375 Score = 30.0 bits (66), Expect = 3.7 Identities = 10/31 (32%), Positives = 21/31 (67%) Frame = +2 Query: 35 NHKRNVPHLSQSNRDTEYISSRSSHSHPTHF 127 NH++ +PHL ++ + E + S+++H + T F Sbjct: 192 NHEKALPHLQEALKGAELLKSKNTHIYATAF 222
>PKNS_MYCPN (P75524) Putative serine/threonine-protein kinase (EC 2.7.11.1)| Length = 389 Score = 30.0 bits (66), Expect = 3.7 Identities = 14/33 (42%), Positives = 18/33 (54%) Frame = -2 Query: 149 LASPRRPRSESGENEMTEMKCTPYLGWTVRDGV 51 L P R G+NEM E+ + YL W +R GV Sbjct: 329 LIKPVHERILEGQNEMRELMVSNYLPWYLRKGV 361
>DAPF_CHLPN (Q9Z833) Diaminopimelate epimerase (EC 5.1.1.7) (DAP epimerase)| Length = 257 Score = 30.0 bits (66), Expect = 3.7 Identities = 19/50 (38%), Positives = 23/50 (46%) Frame = +1 Query: 196 RQLVHRLEPRPGQLPGEPVVAEQHVGHALALGTGQPRGDERVHGADVRLH 345 R VHRLE RP LP E V V HA+ + D + G +R H Sbjct: 121 RASVHRLESRPDPLPKEVVCIHTGVPHAVVILPEISTLDLSILGPFLRYH 170
>B3GT6_MOUSE (Q91Z92) Beta-1,3-galactosyltransferase 6 (EC 2.4.1.134) (Beta| 3GalT6) (Galactosylxylosylprotein 3-beta-galactosyltransferase) (UDP-Gal:betaGal beta 1,3-galactosyltransferase polypeptide 6) (Galactosyltransferase II) (GAG GalTII) Length = 325 Score = 29.3 bits (64), Expect = 6.3 Identities = 20/60 (33%), Positives = 27/60 (45%) Frame = +1 Query: 139 GEAKPKGKQRVVVLVADVHRQLVHRLEPRPGQLPGEPVVAEQHVGHALALGTGQPRGDER 318 G A+P+ K + VLVA R + R R L E + V A+GTG +ER Sbjct: 43 GAARPRAKAFLAVLVASAPRAVERRTAVRSTWLAPERRGGPEDVWARFAVGTGGLGSEER 102
>Y3385_BORBR (Q7WH25) UPF0225 protein BB3385| Length = 133 Score = 28.9 bits (63), Expect = 8.2 Identities = 10/18 (55%), Positives = 12/18 (66%) Frame = -2 Query: 314 SSPRGCPVPRARAWPTCC 261 SSP CP + RA+P CC Sbjct: 6 SSPAACPCGKPRAYPDCC 23
>Y1723_BORPA (Q7W9N2) UPF0225 protein BPP1723| Length = 133 Score = 28.9 bits (63), Expect = 8.2 Identities = 10/18 (55%), Positives = 12/18 (66%) Frame = -2 Query: 314 SSPRGCPVPRARAWPTCC 261 SSP CP + RA+P CC Sbjct: 6 SSPAACPCGKPRAYPDCC 23
>PTF1A_RAT (Q64305) Pancreas transcription factor 1 subunit alpha| (Pancreas-specific transcription factor 1a) (bHLH transcription factor p48) (p48 DNA-binding subunit of transcription factor PTF1) (PTF1-p48) Length = 326 Score = 28.9 bits (63), Expect = 8.2 Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 2/78 (2%) Frame = +2 Query: 74 RDTEYISSRSSHSHPTHFLASVVRPNPKGNSGS*CLSPTFIGSWSTDLNHVLASFPENP* 253 RD + + + S H LA P P G+ G P GS+ D L +FP +P Sbjct: 63 RDGACLLLQPAPSAAPHALA----PPPLGDPGE----PEDSGSYCCDAGAPLGAFPYSPG 114 Query: 254 SPNSTSATPWPSV--PGS 301 SP S A P +V PG+ Sbjct: 115 SPPSCLAYPCTAVLSPGT 132
>ATX2L_MOUSE (Q7TQH0) Ataxin-2-like protein| Length = 1049 Score = 28.9 bits (63), Expect = 8.2 Identities = 15/42 (35%), Positives = 18/42 (42%) Frame = +1 Query: 238 PGEPVVAEQHVGHALALGTGQPRGDERVHGADVRLHHQRPAG 363 PG P +G A A G+G RG E + A HQ G Sbjct: 49 PGPPAAVSPCLGPAAAAGSGLRRGAESILAASAPPQHQERPG 90 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,033,868 Number of Sequences: 219361 Number of extensions: 1381428 Number of successful extensions: 4838 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 4587 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4819 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3638905326 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
