ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart31a03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_482956.1| Oryza sativa (japonica cultivar-group), mRNA 80 7e-12
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 80 7e-12
3dbj|AP003917.3| Oryza sativa (japonica cultivar-group) genomic D... 80 7e-12
4gb|AC145802.2| Xenopus tropicalis clone CH216-80C17, complete se... 42 1.6
5emb|AL606754.6| Human DNA sequence from clone RP11-479E16 on chr... 42 1.6
6dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 42 1.6
7dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 42 1.6
8dbj|AP004015.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
9ref|XM_566224.1| Anopheles gambiae str. PEST ENSANGP00000026283 ... 42 1.6
10ref|XM_310956.2| Anopheles gambiae str. PEST ENSANGP00000019430 ... 42 1.6
11gb|AE017221.1| Thermus thermophilus HB27, complete genome 42 1.6
12gb|AC152976.1| Mus musculus BAC RP23-103K17 (Roswell Park Cance... 40 6.3
13gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 6.3
14gb|AC115767.14| Mus musculus chromosome 6, clone RP23-83K15, com... 40 6.3
15gb|AC102668.12| Mus musculus chromosome 6, clone RP23-296I18, co... 40 6.3
16gb|AC122395.4| Mus musculus BAC clone RP24-86H17 from chromosome... 40 6.3
17gb|DQ462412.1| Spinibarbus sinensis neuropeptide Y mRNA, complet... 40 6.3
18ref|XM_739811.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 6.3
19emb|BX016260.1|CNS08KPK Single read from an extremity of a full-... 40 6.3
20emb|BX119976.8| Zebrafish DNA sequence from clone CH211-196F5 in... 40 6.3
21emb|CR762418.5| Zebrafish DNA sequence from clone RP71-15A9 in l... 40 6.3
22gb|AC107960.3| Homo sapiens chromosome 8, clone RP11-983C19, com... 40 6.3
23gb|AC107870.6| Homo sapiens chromosome 8, clone CTC-777N14, comp... 40 6.3
24gb|AC099818.2| Homo sapiens chromosome 8, clone RP11-99I9, compl... 40 6.3
25ref|NM_131074.1| Danio rerio neuropeptide Y (npy), mRNA 40 6.3
26gb|CP000249.1| Frankia sp. CcI3, complete genome 40 6.3
27dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome 40 6.3
28gb|AC098645.3| Papio anubis clone RP41-470J23, complete sequence 40 6.3
29gb|AF287347.1|AF287347 Cyprinus carpio neuropeptide Y mRNA, comp... 40 6.3
30gb|AF233874.1|AF233874 Danio rerio neuropeptide Y precursor gene... 40 6.3
31emb|BX640495.10| Zebrafish DNA sequence from clone CH211-107H7 i... 40 6.3
32emb|BX640464.10| Zebrafish DNA sequence from clone DKEY-22M8 in ... 40 6.3
33emb|BX510657.9| Zebrafish DNA sequence from clone CH211-142K18 i... 40 6.3
34dbj|AP005661.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 6.3
35gb|M87297.1|CRANPY Carassius auratus neuropeptide Y mRNA, comple... 40 6.3

>ref|XM_482956.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1218

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 157/196 (80%)
 Strand = Plus / Minus

                                                                        
Query: 227  ggcgtcggcggcgctcatcggagagctgccttgcgtacttggcgagctcctccgcgtttg 286
            |||| ||||| ||||| |||||||||||| ||||| ||||||| ||||  ||   ||| |
Sbjct: 1198 ggcgccggcgccgctcgtcggagagctgctttgcgaacttggcaagctgatctctgttcg 1139

                                                                        
Query: 287  tgcctccaccgggcacctccacattccggccggtctccaggtccaccccggacaccttct 346
            ||||| | |||| ||| ||||| |   |||||||||||||||| || |  || || ||||
Sbjct: 1138 tgccttcgccggccacatccacgtaatggccggtctccaggtctactcgtgagacgttct 1079

                                                                        
Query: 347  cggcgagaagctcatccccaatcttcaccaacctatccaagttggccttggagcagtcgt 406
             | ||||||||   ||||||||||||||||   |||||| |||  |||||||||||||||
Sbjct: 1078 tgtcgagaagcatttccccaatcttcaccaggttatccatgttttccttggagcagtcgt 1019

                            
Query: 407  cgatgaagcccgcact 422
            ||||  ||||||||||
Sbjct: 1018 cgatcgagcccgcact 1003



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 157/196 (80%)
 Strand = Plus / Plus

                                                                            
Query: 227      ggcgtcggcggcgctcatcggagagctgccttgcgtacttggcgagctcctccgcgtttg 286
                |||| ||||| ||||| |||||||||||| ||||| ||||||| ||||  ||   ||| |
Sbjct: 23538537 ggcgccggcgccgctcgtcggagagctgctttgcgaacttggcaagctgatctctgttcg 23538596

                                                                            
Query: 287      tgcctccaccgggcacctccacattccggccggtctccaggtccaccccggacaccttct 346
                ||||| | |||| ||| ||||| |   |||||||||||||||| || |  || || ||||
Sbjct: 23538597 tgccttcgccggccacatccacgtaatggccggtctccaggtctactcgtgagacgttct 23538656

                                                                            
Query: 347      cggcgagaagctcatccccaatcttcaccaacctatccaagttggccttggagcagtcgt 406
                 | ||||||||   ||||||||||||||||   |||||| |||  |||||||||||||||
Sbjct: 23538657 tgtcgagaagcatttccccaatcttcaccaggttatccatgttttccttggagcagtcgt 23538716

                                
Query: 407      cgatgaagcccgcact 422
                ||||  ||||||||||
Sbjct: 23538717 cgatcgagcccgcact 23538732



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 357      ctcatccccaatcttcaccaa 377
                |||||||||||||||||||||
Sbjct: 26302374 ctcatccccaatcttcaccaa 26302394



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>dbj|AP003917.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1666_A04
          Length = 90097

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 157/196 (80%)
 Strand = Plus / Plus

                                                                         
Query: 227   ggcgtcggcggcgctcatcggagagctgccttgcgtacttggcgagctcctccgcgtttg 286
             |||| ||||| ||||| |||||||||||| ||||| ||||||| ||||  ||   ||| |
Sbjct: 18312 ggcgccggcgccgctcgtcggagagctgctttgcgaacttggcaagctgatctctgttcg 18371

                                                                         
Query: 287   tgcctccaccgggcacctccacattccggccggtctccaggtccaccccggacaccttct 346
             ||||| | |||| ||| ||||| |   |||||||||||||||| || |  || || ||||
Sbjct: 18372 tgccttcgccggccacatccacgtaatggccggtctccaggtctactcgtgagacgttct 18431

                                                                         
Query: 347   cggcgagaagctcatccccaatcttcaccaacctatccaagttggccttggagcagtcgt 406
              | ||||||||   ||||||||||||||||   |||||| |||  |||||||||||||||
Sbjct: 18432 tgtcgagaagcatttccccaatcttcaccaggttatccatgttttccttggagcagtcgt 18491

                             
Query: 407   cgatgaagcccgcact 422
             ||||  ||||||||||
Sbjct: 18492 cgatcgagcccgcact 18507



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>gb|AC145802.2| Xenopus tropicalis clone CH216-80C17, complete sequence
          Length = 163910

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 45    aagcacatattatatgtgcta 65
             |||||||||||||||||||||
Sbjct: 98064 aagcacatattatatgtgcta 98084



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>emb|AL606754.6| Human DNA sequence from clone RP11-479E16 on chromosome X Contains the
             3' end of the gene for a novel protein (FLJ31204),
             complete sequence
          Length = 106636

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 41    tataaagcacatattatatgt 61
             |||||||||||||||||||||
Sbjct: 54287 tataaagcacatattatatgt 54307



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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 223     ttacggcgtcggcggcgctca 243
               |||||||||||||||||||||
Sbjct: 4049712 ttacggcgtcggcggcgctca 4049692



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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 314     ggccggtctccaggtccaccc 334
               |||||||||||||||||||||
Sbjct: 1129003 ggccggtctccaggtccaccc 1129023



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>dbj|AP004015.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1770_H02
          Length = 170648

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 357   ctcatccccaatcttcaccaa 377
             |||||||||||||||||||||
Sbjct: 31955 ctcatccccaatcttcaccaa 31975



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>ref|XM_566224.1| Anopheles gambiae str. PEST ENSANGP00000026283 (ENSANGG00000016941),
            partial mRNA
          Length = 1459

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 260  cgtacttggcgagctcctccgcgtt 284
            |||||||||| ||||||||||||||
Sbjct: 1264 cgtacttggccagctcctccgcgtt 1240



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>ref|XM_310956.2| Anopheles gambiae str. PEST ENSANGP00000019430 (ENSANGG00000016941),
            mRNA
          Length = 1731

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 260  cgtacttggcgagctcctccgcgtt 284
            |||||||||| ||||||||||||||
Sbjct: 1536 cgtacttggccagctcctccgcgtt 1512



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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 314    ggccggtctccaggtccaccc 334
              |||||||||||||||||||||
Sbjct: 802362 ggccggtctccaggtccaccc 802382



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>gb|AC152976.1| Mus musculus  BAC RP23-103K17 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 194151

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 39    catataaagcacatattata 58
             ||||||||||||||||||||
Sbjct: 70465 catataaagcacatattata 70446



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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 226    cggcgtcggcggcgctcatc 245
              ||||||||||||||||||||
Sbjct: 113747 cggcgtcggcggcgctcatc 113766



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>gb|AC115767.14| Mus musculus chromosome 6, clone RP23-83K15, complete sequence
          Length = 257790

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 39     catataaagcacatattata 58
              ||||||||||||||||||||
Sbjct: 255591 catataaagcacatattata 255610



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>gb|AC102668.12| Mus musculus chromosome 6, clone RP23-296I18, complete sequence
          Length = 186488

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 39     catataaagcacatattata 58
              ||||||||||||||||||||
Sbjct: 152716 catataaagcacatattata 152697



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>gb|AC122395.4| Mus musculus BAC clone RP24-86H17 from chromosome 9, complete sequence
          Length = 203891

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 67     taatgactcttgcacaagac 86
              ||||||||||||||||||||
Sbjct: 129318 taatgactcttgcacaagac 129337



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>gb|DQ462412.1| Spinibarbus sinensis neuropeptide Y mRNA, complete cds
          Length = 740

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 262 tacttggcgagctcctccgc 281
           ||||||||||||||||||||
Sbjct: 202 tacttggcgagctcctccgc 183



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>ref|XM_739811.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000210.02.0)
           partial mRNA
          Length = 888

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 48  cacatattatatgtgctaat 67
           ||||||||||||||||||||
Sbjct: 274 cacatattatatgtgctaat 255



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>emb|BX016260.1|CNS08KPK Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAA24BE12 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 974

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 299 gcacctccacattccggccggtct 322
           ||||||||||||||| ||||||||
Sbjct: 310 gcacctccacattcccgccggtct 287



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>emb|BX119976.8| Zebrafish DNA sequence from clone CH211-196F5 in linkage group 20
             Contains the gene for a novel protein (zgc:63952), the 3'
             end of the gene for a novel protein similar to mouse and
             human importin 4 (IPO4), three genes for transposase, a
             novel gene and six CpG islands, complete sequence
          Length = 190000

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 190   caattgctagtttggtttgaggca 213
             |||||||| |||||||||||||||
Sbjct: 60892 caattgctggtttggtttgaggca 60869



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>emb|CR762418.5| Zebrafish DNA sequence from clone RP71-15A9 in linkage group 19,
             complete sequence
          Length = 147881

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 262   tacttggcgagctcctccgc 281
             ||||||||||||||||||||
Sbjct: 57178 tacttggcgagctcctccgc 57197



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>gb|AC107960.3| Homo sapiens chromosome 8, clone RP11-983C19, complete sequence
          Length = 180854

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 164   ttgaacacatacattaaact 183
             ||||||||||||||||||||
Sbjct: 37889 ttgaacacatacattaaact 37870



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>gb|AC107870.6| Homo sapiens chromosome 8, clone CTC-777N14, complete sequence
          Length = 73460

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 164   ttgaacacatacattaaact 183
             ||||||||||||||||||||
Sbjct: 50721 ttgaacacatacattaaact 50702



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>gb|AC099818.2| Homo sapiens chromosome 8, clone RP11-99I9, complete sequence
          Length = 160046

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 164    ttgaacacatacattaaact 183
              ||||||||||||||||||||
Sbjct: 151905 ttgaacacatacattaaact 151886



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>ref|NM_131074.1| Danio rerio neuropeptide Y (npy), mRNA
          Length = 1033

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 262 tacttggcgagctcctccgc 281
           ||||||||||||||||||||
Sbjct: 204 tacttggcgagctcctccgc 185



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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 292     ccaccgggcacctccacattccggccgg 319
               |||||||||| ||| |||||||||||||
Sbjct: 3069891 ccaccgggcagctcgacattccggccgg 3069864



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>dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome
          Length = 2088737

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 339     caccttctcggcgagaagct 358
               ||||||||||||||||||||
Sbjct: 1880735 caccttctcggcgagaagct 1880754



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>gb|AC098645.3| Papio anubis clone RP41-470J23, complete sequence
          Length = 193317

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 111    ataattaaatcaaacaaaca 130
              ||||||||||||||||||||
Sbjct: 124975 ataattaaatcaaacaaaca 124994



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>gb|AF287347.1|AF287347 Cyprinus carpio neuropeptide Y mRNA, complete cds
          Length = 730

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 262 tacttggcgagctcctccgc 281
           ||||||||||||||||||||
Sbjct: 211 tacttggcgagctcctccgc 192



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>gb|AF233874.1|AF233874 Danio rerio neuropeptide Y precursor gene, complete cds
          Length = 2987

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 262 tacttggcgagctcctccgc 281
           ||||||||||||||||||||
Sbjct: 879 tacttggcgagctcctccgc 860



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>emb|BX640495.10| Zebrafish DNA sequence from clone CH211-107H7 in linkage group 20,
             complete sequence
          Length = 73842

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 41    tataaagcacatattatatg 60
             ||||||||||||||||||||
Sbjct: 27565 tataaagcacatattatatg 27584



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>emb|BX640464.10| Zebrafish DNA sequence from clone DKEY-22M8 in linkage group 19, complete
              sequence
          Length = 255824

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 262    tacttggcgagctcctccgc 281
              ||||||||||||||||||||
Sbjct: 226591 tacttggcgagctcctccgc 226610



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>emb|BX510657.9| Zebrafish DNA sequence from clone CH211-142K18 in linkage group 20,
             complete sequence
          Length = 163967

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    ttttcatgtcatataaagca 49
             ||||||||||||||||||||
Sbjct: 59860 ttttcatgtcatataaagca 59879



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>dbj|AP005661.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1182F3, complete
             sequence
          Length = 151887

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 164   ttgaacacatacattaaact 183
             ||||||||||||||||||||
Sbjct: 81263 ttgaacacatacattaaact 81244



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>gb|M87297.1|CRANPY Carassius auratus neuropeptide Y mRNA, complete cds
          Length = 1051

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 262 tacttggcgagctcctccgc 281
           ||||||||||||||||||||
Sbjct: 190 tacttggcgagctcctccgc 171


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,976,743
Number of Sequences: 3902068
Number of extensions: 3976743
Number of successful extensions: 96460
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96110
Number of HSP's gapped (non-prelim): 347
length of query: 469
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 447
effective length of database: 17,147,199,772
effective search space: 7664798298084
effective search space used: 7664798298084
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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