ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart31a01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KPYR_MOUSE (P53657) Pyruvate kinase isozymes R/L (EC 2.7.1.40) (... 35 0.16
2KPYR_RAT (P12928) Pyruvate kinase isozymes R/L (EC 2.7.1.40) (L-PK) 34 0.21
3WD66_PHYPO (P90587) 66 kDa stress protein (p66) 33 0.62
4PKNH_MYCTU (Q11053) Probable serine/threonine-protein kinase pkn... 32 1.4
5CMGA_BOVIN (P05059) Chromogranin A precursor (CgA) (Pituitary se... 31 1.8
6KLF16_MOUSE (P58334) Krueppel-like factor 16 (Transcription fact... 31 2.4
7THIE_SYNPX (Q7U5U1) Thiamine-phosphate pyrophosphorylase (EC 2.5... 29 9.0

>KPYR_MOUSE (P53657) Pyruvate kinase isozymes R/L (EC 2.7.1.40) (L-PK)|
          Length = 574

 Score = 34.7 bits (78), Expect = 0.16
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 351 WPWAVENPRPQEKVATKG-PGN*AKLRRRALVTQYSKQLGTKF 226
           WPW  ++ +   K A  G PG  A   RRA V Q +++LGT F
Sbjct: 13  WPWIFKSQKDLAKSALSGAPGGPAGYLRRASVAQLTQELGTAF 55



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>KPYR_RAT (P12928) Pyruvate kinase isozymes R/L (EC 2.7.1.40) (L-PK)|
          Length = 574

 Score = 34.3 bits (77), Expect = 0.21
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 351 WPWAVENPRPQEKVATKG-PGN*AKLRRRALVTQYSKQLGTKF 226
           WPW   + +   K A  G PG  A   RRA V Q +++LGT F
Sbjct: 13  WPWIFRSQKDLAKSALSGAPGGPAGYLRRASVAQLTQELGTAF 55



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>WD66_PHYPO (P90587) 66 kDa stress protein (p66)|
          Length = 601

 Score = 32.7 bits (73), Expect = 0.62
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = -1

Query: 525 ATEHEETVFSLVRTEADEEDILTTPGRHPGFLPRLRMDPDGQHPGTDDHPRDI 367
           A ++   ++SL  T   E+ +L+    H GFL  +   PDG+H  + D  RDI
Sbjct: 460 AKDNSIHIYSLSGTTLSEQAVLSG---HRGFLTAIAYSPDGKHFASADQNRDI 509



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>PKNH_MYCTU (Q11053) Probable serine/threonine-protein kinase pknH (EC|
           2.7.11.1)
          Length = 626

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 15/45 (33%), Positives = 18/45 (40%)
 Frame = -1

Query: 453 PGRHPGFLPRLRMDPDGQHPGTDDHPRDILRGGPWPWAVENPRPQ 319
           P   P + P  +  P GQ PG    P      GP P +   P PQ
Sbjct: 330 PAPKPSYTPPAQPGPAGQRPGPTGQPSWAPNSGPMPASGPTPTPQ 374



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>CMGA_BOVIN (P05059) Chromogranin A precursor (CgA) (Pituitary secretory|
           protein I) (SP-I) [Contains: Vasostatin-1; Chromostatin;
           Chromacin; Pancreastatin; WE-14; Catestatin]
          Length = 449

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
 Frame = -1

Query: 483 EADEEDILTTPGRHPGFLPRLRMDPDGQHPGTDD------HPRDILRGGPWPWAVENPRP 322
           ++DE+     P   PG  P  +++ D Q PG ++      HP   L   P P   + P P
Sbjct: 141 KSDEDSDGDRPQASPGLGPGPKVEEDNQAPGEEEEAPSNAHP---LASLPSP---KYPGP 194

Query: 321 QEKVATKGPGN*AKLRRRALVTQYSKQ 241
           Q K  ++GP      R + L  +  +Q
Sbjct: 195 QAKEDSEGPSQGPASREKGLSAEQGRQ 221



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>KLF16_MOUSE (P58334) Krueppel-like factor 16 (Transcription factor BTEB4)|
           (Basic transcription element-binding protein 4)
           (BTE-binding protein 4) (Dopamine receptor-regulating
           factor)
          Length = 251

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 16/42 (38%), Positives = 18/42 (42%)
 Frame = -1

Query: 447 RHPGFLPRLRMDPDGQHPGTDDHPRDILRGGPWPWAVENPRP 322
           RHPGF P L   P  +     D     L G P P  V +P P
Sbjct: 207 RHPGFRPELLRRPGARSVSPSDSLPCSLAGSPTPSPVPSPAP 248



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>THIE_SYNPX (Q7U5U1) Thiamine-phosphate pyrophosphorylase (EC 2.5.1.3) (TMP|
           pyrophosphorylase) (TMP-PPase) (Thiamine-phosphate
           synthase)
          Length = 349

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 423 LRMDPDGQHPGTDDHPRDILRG 358
           L +D DG H G DD P D+ RG
Sbjct: 216 LAVDADGVHLGQDDLPTDVARG 237


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,506,175
Number of Sequences: 219361
Number of extensions: 1697525
Number of successful extensions: 4563
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4561
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 3970331829
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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