ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart31a01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK068177.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 1e-26
2ref|NM_129078.2| Arabidopsis thaliana unknown protein AT2G35260 ... 46 0.12
3gb|AC004667.3| Arabidopsis thaliana chromosome 2 clone T4C15 map... 46 0.12
4gb|AY081832.1| Arabidopsis thaliana At2g35260/T4C15.7 mRNA, comp... 46 0.12
5gb|AF361619.1| Arabidopsis thaliana At2g35260/T4C15.7 mRNA, comp... 46 0.12
6gb|AC153156.1| Ornithorhynchus anatinus chromosome UNK clone OAB... 44 0.45
7ref|XM_783247.1| PREDICTED: Strongylocentrotus purpuratus simila... 44 0.45
8gb|AC160114.2| Mus musculus BAC clone RP24-70J8 from chromosome ... 42 1.8
9gb|AC132222.3| Mus musculus BAC clone RP24-549C2 from chromosome... 42 1.8
10emb|AL354873.19| Human DNA sequence from clone RP11-108K1 on chr... 42 1.8
11gb|AC004747.3| Arabidopsis thaliana chromosome 2 clone T19L18 ma... 42 1.8
12gb|AC018848.6|AC018848 Arabidopsis thaliana chromosome 1 BAC F5I... 42 1.8
13gb|AC018849.2|AC018849 Arabidopsis thaliana chromosome 1 BAC T21... 42 1.8
14gb|AC005881.3|AC005881 citb_79_e_16, complete sequence 42 1.8
15gb|AC099576.12| Mus musculus chromosome 3, clone RP23-93G15, com... 40 7.1
16gb|AC161264.2| Mus musculus BAC clone RP23-275J22 from chromosom... 40 7.1
17gb|AC122737.7| Mus musculus chromosome 3, clone RP23-302O3, comp... 40 7.1
18gb|AC123647.9| Mus musculus chromosome 3, clone RP23-105J10, com... 40 7.1
19gb|AC166261.6| Mus musculus BAC RP23-343K20 (Roswell Park Cance... 40 7.1
20ref|XM_911428.2| PREDICTED: Mus musculus elongation factor RNA p... 40 7.1
21gb|AC122499.4| Mus musculus BAC clone RP24-407O20 from chromosom... 40 7.1
22gb|AC126557.3| Mus musculus BAC clone RP23-201J9 from 3, complet... 40 7.1
23gb|AC122899.2| Mus musculus BAC clone RP23-74L7 from 3, complete... 40 7.1
24gb|AC098707.2| Mus musculus BAC clone RP23-1I13 from 18, complet... 40 7.1
25gb|AE014075.1| Escherichia coli CFT073, complete genome 40 7.1
26gb|AC114403.15| Mus musculus chromosome 1, clone RP23-197H1, com... 40 7.1
27gb|CP000243.1| Escherichia coli UTI89, complete genome 40 7.1
28emb|AL359513.12| Human DNA sequence from clone RP11-245D16 on ch... 40 7.1
29emb|AL353572.13| Human DNA sequence from clone RP11-350E12 on ch... 40 7.1
30gb|U00096.2| Escherichia coli K-12 MG1655, complete genome 40 7.1
31emb|CR380957.1| Candida glabrata strain CBS138 chromosome K comp... 40 7.1
32emb|AL773507.7| Mouse DNA sequence from clone RP23-322E14 on chr... 40 7.1
33gb|AC120053.4| Homo sapiens chromosome 8, clone CTD-2006H14, com... 40 7.1
34gb|AC010834.19| Homo sapiens chromosome 8, clone RP11-10N23, com... 40 7.1
35emb|BX530018.8| Zebrafish DNA sequence from clone DKEY-228B21 in... 40 7.1
36dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome 40 7.1
37dbj|AK027272.2| Homo sapiens cDNA FLJ14366 fis, A-HEMBA1001020 40 7.1
38dbj|AK144197.1| Mus musculus submandibular gland CRL-1734 SCA-9 ... 40 7.1
39dbj|AK156164.1| Mus musculus activated spleen cDNA, RIKEN full-l... 40 7.1
40dbj|AK163926.1| Mus musculus 0 day neonate cerebellum cDNA, RIKE... 40 7.1
41gb|AC156954.5| Mus musculus 6 BAC RP24-343M7 (Roswell Park Cance... 40 7.1
42gb|AC009242.5| Homo sapiens BAC clone RP11-557N21 from 2, comple... 40 7.1
43gb|AF294318.1|AF294318 Escherichia coli strain 536 transcription... 40 7.1
44gb|M94889.1|ECORFAH Escherichia coli RfaH (rfaH) gene, complete cds 40 7.1
45gb|AC153903.5| Mus musculus 6 BAC RP23-20C5 (Roswell Park Cancer... 40 7.1
46emb|X65013.1|ECHLYT E.coli DNA sequence of hlyT (rfaH, sfrB) loc... 40 7.1
47gb|M87049.1|ECOUW85 E. coli genomic sequence of the region from ... 40 7.1
48gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome 40 7.1
49gb|BC006925.1| Mus musculus elongation factor RNA polymerase II ... 40 7.1
50dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome 40 7.1
51gb|CP000034.1| Shigella dysenteriae Sd197, complete genome 40 7.1
52emb|AL732487.10| Mouse DNA sequence from clone RP23-188N15 on ch... 40 7.1
53gb|CP000036.1| Shigella boydii Sb227, complete genome 40 7.1
54gb|J02722.1|RATHOXA Rat heme oxygenase gene, complete cds 40 7.1
55emb|AJ429398.1|HSA429398 Homo sapiens CKAP2 gene for cytoskeleto... 40 7.1
56gb|CP000038.1| Shigella sonnei Ss046, complete genome 40 7.1 
>dbj|AK068177.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013131A16, full
            insert sequence
          Length = 1756

 Score =  129 bits (65), Expect = 1e-26
 Identities = 167/201 (83%)
 Strand = Plus / Minus

                                                                        
Query: 312  ccttctcctgtggtcttggattttccacagcccatggccaaggaccaccgcggagtatat 371
            ||||||||||||||| || |||||||||| |||||||| ||| || || |  ||||||||
Sbjct: 1443 ccttctcctgtggtcgtgtattttccacaacccatggcaaagcacaacggtagagtatat 1384

                                                                        
Query: 372  cccgtgggtgatcatcggtgccaggatgttgcccgtctggatccattcgaagccgaggta 431
             |||||||||||||| ||||| || || ||  | ||||||||||| || ||||| |||||
Sbjct: 1383 gccgtgggtgatcataggtgcaagaatattatctgtctggatccactcaaagccaaggta 1324

                                                                        
Query: 432  gaaagccaggatgccttccaggagtggtgagtatatcttcctcatctgcctccgttcgta 491
            |||||||| ||| ||||| || || || || |||||||||||||| |||| || ||| ||
Sbjct: 1323 gaaagccaagattccttcaagaagaggggaatatatcttcctcatttgccgcctttcata 1264

                                 
Query: 492  ccaagctgaaaacagtttctt 512
            ||| |||| ||| ||||||||
Sbjct: 1263 ccatgctgcaaatagtttctt 1243
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>ref|NM_129078.2| Arabidopsis thaliana unknown protein AT2G35260 mRNA, complete cds
          Length = 1623

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 149/191 (78%)
 Strand = Plus / Minus

                                                                        
Query: 310  aaccttctcctgtggtcttggattttccacagcccatggccaaggaccaccgcggagtat 369
            |||||||||| ||| || || ||||||||||||||||| || |  |  ||||| ||||||
Sbjct: 1203 aaccttctccggtgatcgtgaattttccacagcccatgccctaatatgaccgccgagtat 1144

                                                                        
Query: 370  atcccgtgggtgatcatcggtgccaggatgttgcccgtctggatccattcgaagccgagg 429
            || || || || ||||||||||| |  || ||  ||||||| | |||||| |  ||||| 
Sbjct: 1143 ataccatgcgtcatcatcggtgctaatatattatccgtctgaacccattcaataccgaga 1084

                                                                        
Query: 430  tagaaagccaggatgccttccaggagtggtgagtatatcttcctcatctgcctccgttcg 489
            ||||  || | ||  ||||| |||||||| ||||| |||||| ||||||| |||   || 
Sbjct: 1083 tagagggctaagagtccttcaaggagtggagagtaaatcttcttcatctgtctcttctca 1024

                       
Query: 490  taccaagctga 500
            |||||||||||
Sbjct: 1023 taccaagctga 1013
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>gb|AC004667.3| Arabidopsis thaliana chromosome 2 clone T4C15 map ve016, complete
             sequence
          Length = 91863

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 68/83 (81%)
 Strand = Plus / Plus

                                                                         
Query: 310   aaccttctcctgtggtcttggattttccacagcccatggccaaggaccaccgcggagtat 369
             |||||||||| ||| || || ||||||||||||||||| || |  |  ||||| ||||||
Sbjct: 18005 aaccttctccggtgatcgtgaattttccacagcccatgccctaatatgaccgccgagtat 18064

                                    
Query: 370   atcccgtgggtgatcatcggtgc 392
             || || || || |||||||||||
Sbjct: 18065 ataccatgcgtcatcatcggtgc 18087
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>gb|AY081832.1| Arabidopsis thaliana At2g35260/T4C15.7 mRNA, complete cds
          Length = 1149

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 149/191 (78%)
 Strand = Plus / Minus

                                                                        
Query: 310  aaccttctcctgtggtcttggattttccacagcccatggccaaggaccaccgcggagtat 369
            |||||||||| ||| || || ||||||||||||||||| || |  |  ||||| ||||||
Sbjct: 1097 aaccttctccggtgatcgtgaattttccacagcccatgccctaatatgaccgccgagtat 1038

                                                                        
Query: 370  atcccgtgggtgatcatcggtgccaggatgttgcccgtctggatccattcgaagccgagg 429
            || || || || ||||||||||| |  || ||  ||||||| | |||||| |  ||||| 
Sbjct: 1037 ataccatgcgtcatcatcggtgctaatatattatccgtctgaacccattcaataccgaga 978

                                                                        
Query: 430  tagaaagccaggatgccttccaggagtggtgagtatatcttcctcatctgcctccgttcg 489
            ||||  || | ||  ||||| |||||||| ||||| |||||| ||||||| |||   || 
Sbjct: 977  tagagggctaagagtccttcaaggagtggagagtaaatcttcttcatctgtctcttctca 918

                       
Query: 490  taccaagctga 500
            |||||||||||
Sbjct: 917  taccaagctga 907
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>gb|AF361619.1| Arabidopsis thaliana At2g35260/T4C15.7 mRNA, complete cds
          Length = 1440

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 149/191 (78%)
 Strand = Plus / Minus

                                                                        
Query: 310  aaccttctcctgtggtcttggattttccacagcccatggccaaggaccaccgcggagtat 369
            |||||||||| ||| || || ||||||||||||||||| || |  |  ||||| ||||||
Sbjct: 1203 aaccttctccggtgatcgtgaattttccacagcccatgccctaatatgaccgccgagtat 1144

                                                                        
Query: 370  atcccgtgggtgatcatcggtgccaggatgttgcccgtctggatccattcgaagccgagg 429
            || || || || ||||||||||| |  || ||  ||||||| | |||||| |  ||||| 
Sbjct: 1143 ataccatgcgtcatcatcggtgctaatatattatccgtctgaacccattcaataccgaga 1084

                                                                        
Query: 430  tagaaagccaggatgccttccaggagtggtgagtatatcttcctcatctgcctccgttcg 489
            ||||  || | ||  ||||| |||||||| ||||| |||||| ||||||| |||   || 
Sbjct: 1083 tagagggctaagagtccttcaaggagtggagagtaaatcttcttcatctgtctcttctca 1024

                       
Query: 490  taccaagctga 500
            |||||||||||
Sbjct: 1023 taccaagctga 1013
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>gb|AC153156.1| Ornithorhynchus anatinus chromosome UNK clone OABb-289A1, complete
             sequence
          Length = 109794

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 234   tccctagctgcttagaatattg 255
             ||||||||||||||||||||||
Sbjct: 59083 tccctagctgcttagaatattg 59104
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>ref|XM_783247.1| PREDICTED: Strongylocentrotus purpuratus similar to Solute carrier
            family 2, facilitated glucose transporter, member 5
            (Glucose transporter type 5, small intestine) (Fructose
            transporter) (LOC583334), mRNA
          Length = 1317

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 457  ggtgagtatatcttcctcatct 478
            ||||||||||||||||||||||
Sbjct: 1153 ggtgagtatatcttcctcatct 1174
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>gb|AC160114.2| Mus musculus BAC clone RP24-70J8 from chromosome 13, complete sequence
          Length = 237699

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 30     ttcatgaatacatacatacat 50
              |||||||||||||||||||||
Sbjct: 192031 ttcatgaatacatacatacat 192011
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>gb|AC132222.3| Mus musculus BAC clone RP24-549C2 from chromosome 5, complete sequence
          Length = 173603

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 30     ttcatgaatacatacatacat 50
              |||||||||||||||||||||
Sbjct: 123548 ttcatgaatacatacatacat 123568
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>emb|AL354873.19| Human DNA sequence from clone RP11-108K1 on chromosome 10 Contains a
              peptidylprolyl isomerase A (cyclophilin A) (PPIA)
              pseudogene, the 5' end of the ABLIM1 gene for actin binding
              LIM protein 1 and a CpG island, complete sequence
          Length = 187344

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 500    aaaacagtttcttcatgttct 520
              |||||||||||||||||||||
Sbjct: 185346 aaaacagtttcttcatgttct 185326
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>gb|AC004747.3| Arabidopsis thaliana chromosome 2 clone T19L18 map B68, complete
             sequence
          Length = 87080

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 37    atacatacatacattgaaaac 57
             |||||||||||||||||||||
Sbjct: 55253 atacatacatacattgaaaac 55233
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>gb|AC018848.6|AC018848 Arabidopsis thaliana chromosome 1 BAC F5I6 genomic sequence, complete
              sequence
          Length = 132990

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 74     ttctacatatacactaacaca 94
              |||||||||||||||||||||
Sbjct: 125268 ttctacatatacactaacaca 125288
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>gb|AC018849.2|AC018849 Arabidopsis thaliana chromosome 1 BAC T21F11 genomic sequence, complete
             sequence
          Length = 89811

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 74    ttctacatatacactaacaca 94
             |||||||||||||||||||||
Sbjct: 20882 ttctacatatacactaacaca 20862
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>gb|AC005881.3|AC005881 citb_79_e_16, complete sequence
          Length = 181773

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 500    aaaacagtttcttcatgttct 520
              |||||||||||||||||||||
Sbjct: 150933 aaaacagtttcttcatgttct 150953
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>gb|AC099576.12| Mus musculus chromosome 3, clone RP23-93G15, complete sequence
          Length = 156835

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    tcatgaatacatacatacat 50
             ||||||||||||||||||||
Sbjct: 86584 tcatgaatacatacatacat 86603
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>gb|AC161264.2| Mus musculus BAC clone RP23-275J22 from chromosome 9, complete sequence
          Length = 131422

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    ttcatgaatacatacataca 49
             ||||||||||||||||||||
Sbjct: 92379 ttcatgaatacatacataca 92360
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>gb|AC122737.7| Mus musculus chromosome 3, clone RP23-302O3, complete sequence
          Length = 179544

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 34     tgaatacatacatacattga 53
              ||||||||||||||||||||
Sbjct: 162481 tgaatacatacatacattga 162462
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>gb|AC123647.9| Mus musculus chromosome 3, clone RP23-105J10, complete sequence
          Length = 202415

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 34    tgaatacatacatacattga 53
             ||||||||||||||||||||
Sbjct: 47513 tgaatacatacatacattga 47494
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>gb|AC166261.6| Mus musculus  BAC RP23-343K20 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 190585

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 493    caagctgaaaacagtttcttcatgttct 520
              ||||||||||| |||||| |||||||||
Sbjct: 188058 caagctgaaaagagtttcctcatgttct 188085
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>ref|XM_911428.2| PREDICTED: Mus musculus elongation factor RNA polymerase II 2,
            transcript variant 5 (Ell2), mRNA
          Length = 4379

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 37   atacatacatacattgaaaa 56
            ||||||||||||||||||||
Sbjct: 3366 atacatacatacattgaaaa 3385
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>gb|AC122499.4| Mus musculus BAC clone RP24-407O20 from chromosome 9, complete sequence
          Length = 186516

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 225   aaaacttggtccctagctgc 244
             ||||||||||||||||||||
Sbjct: 48933 aaaacttggtccctagctgc 48952
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>gb|AC126557.3| Mus musculus BAC clone RP23-201J9 from 3, complete sequence
          Length = 176278

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 37    atacatacatacattgaaaa 56
             ||||||||||||||||||||
Sbjct: 57653 atacatacatacattgaaaa 57672
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>gb|AC122899.2| Mus musculus BAC clone RP23-74L7 from 3, complete sequence
          Length = 214857

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 37   atacatacatacattgaaaa 56
            ||||||||||||||||||||
Sbjct: 2091 atacatacatacattgaaaa 2072
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>gb|AC098707.2| Mus musculus BAC clone RP23-1I13 from 18, complete sequence
          Length = 230128

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 36    aatacatacatacattgaaa 55
             ||||||||||||||||||||
Sbjct: 47915 aatacatacatacattgaaa 47896
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>gb|AE014075.1| Escherichia coli CFT073, complete genome
          Length = 5231428

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 377     gggtgatcatcggtgccagg 396
               ||||||||||||||||||||
Sbjct: 4550571 gggtgatcatcggtgccagg 4550590
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>gb|AC114403.15| Mus musculus chromosome 1, clone RP23-197H1, complete sequence
          Length = 221305

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 500   aaaacagtttcttcatgttctgtc 523
             |||||||||||||||| |||||||
Sbjct: 70700 aaaacagtttcttcatattctgtc 70723
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>gb|CP000243.1| Escherichia coli UTI89, complete genome
          Length = 5065741

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 377     gggtgatcatcggtgccagg 396
               ||||||||||||||||||||
Sbjct: 4311146 gggtgatcatcggtgccagg 4311165
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>emb|AL359513.12| Human DNA sequence from clone RP11-245D16 on chromosome 13 Contains the
              gene for TMTSP for transmembrane molecule with
              thrombospondin module (LOC55901), the gene fpr CGI-145
              protein (LOC51028), the CKAP2 gene for cytoskeleton
              associated protein 2 (LB1, FLJ10749) and 3 CpG islands,
              complete sequence
          Length = 116430

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                  
Query: 90     acacacttatataagtactatgtatacactgtatat 125
              |||||| ||||||  || ||||||||||||||||||
Sbjct: 101248 acacacatatatatataatatgtatacactgtatat 101283
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>emb|AL353572.13| Human DNA sequence from clone RP11-350E12 on chromosome 9 Contains the
              gene for cell cycle related kinase (CCRK,CDCH), two novel
              pseudogenes, a 40S ribosomal protein S10 pseudogene
              (RPS10P3), a pseudogene similar to part of a novel protein
              and two CpG islands, complete sequence
          Length = 207295

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 139    tcctgcctgcatatgtacat 158
              ||||||||||||||||||||
Sbjct: 131267 tcctgcctgcatatgtacat 131286
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>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome
          Length = 4639675

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 377     gggtgatcatcggtgccagg 396
               ||||||||||||||||||||
Sbjct: 4022742 gggtgatcatcggtgccagg 4022761
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>emb|CR380957.1| Candida glabrata strain CBS138 chromosome K complete sequence
          Length = 1302002

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 249    aatattgggtgactagagct 268
              ||||||||||||||||||||
Sbjct: 692329 aatattgggtgactagagct 692348
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>emb|AL773507.7| Mouse DNA sequence from clone RP23-322E14 on chromosome 4 Contains a
             phospholipase A2, group XIIA (Pla2g12) pseudogene,
             complete sequence
          Length = 200646

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 36    aatacatacatacattgaaa 55
             ||||||||||||||||||||
Sbjct: 72548 aatacatacatacattgaaa 72567
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>gb|AC120053.4| Homo sapiens chromosome 8, clone CTD-2006H14, complete sequence
          Length = 124497

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 31    tcatgaatacatacatacat 50
             ||||||||||||||||||||
Sbjct: 28427 tcatgaatacatacatacat 28408
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>gb|AC010834.19| Homo sapiens chromosome 8, clone RP11-10N23, complete sequence
          Length = 175967

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    tcatgaatacatacatacat 50
             ||||||||||||||||||||
Sbjct: 42351 tcatgaatacatacatacat 42370
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>emb|BX530018.8| Zebrafish DNA sequence from clone DKEY-228B21 in linkage group 1,
            complete sequence
          Length = 221617

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 32   catgaatacatacatacatt 51
            ||||||||||||||||||||
Sbjct: 2642 catgaatacatacatacatt 2623
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>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome
          Length = 4646332

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 377     gggtgatcatcggtgccagg 396
               ||||||||||||||||||||
Sbjct: 3611962 gggtgatcatcggtgccagg 3611943
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>dbj|AK027272.2| Homo sapiens cDNA FLJ14366 fis, A-HEMBA1001020
          Length = 1893

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 421  aagccgaggtagaaagccag 440
            ||||||||||||||||||||
Sbjct: 1073 aagccgaggtagaaagccag 1092
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>dbj|AK144197.1| Mus musculus submandibular gland CRL-1734 SCA-9 clone 15 cDNA, RIKEN
            full-length enriched library, clone:G430091K06
            product:elongation factor RNA polymerase II 2, full
            insert sequence
          Length = 3527

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 37   atacatacatacattgaaaa 56
            ||||||||||||||||||||
Sbjct: 2650 atacatacatacattgaaaa 2669
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>dbj|AK156164.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
            library, clone:F830010C14 product:elongation factor RNA
            polymerase II 2, full insert sequence
          Length = 3649

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 37   atacatacatacattgaaaa 56
            ||||||||||||||||||||
Sbjct: 2653 atacatacatacattgaaaa 2672
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>dbj|AK163926.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:C230063O16 product:hypothetical
            protein, full insert sequence
          Length = 2695

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 30   ttcatgaatacatacataca 49
            ||||||||||||||||||||
Sbjct: 1935 ttcatgaatacatacataca 1954
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>gb|AC156954.5| Mus musculus 6 BAC RP24-343M7 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 179140

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 493    caagctgaaaacagtttcttcatgttct 520
              ||||||||||| |||||| |||||||||
Sbjct: 156899 caagctgaaaagagtttcctcatgttct 156872
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>gb|AC009242.5| Homo sapiens BAC clone RP11-557N21 from 2, complete sequence
          Length = 158395

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 421    aagccgaggtagaaagccag 440
              ||||||||||||||||||||
Sbjct: 125250 aagccgaggtagaaagccag 125231
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>gb|AF294318.1|AF294318 Escherichia coli strain 536 transcriptional activator RfaH (rfaH)
           gene, complete cds
          Length = 1620

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 377 gggtgatcatcggtgccagg 396
           ||||||||||||||||||||
Sbjct: 634 gggtgatcatcggtgccagg 615
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>gb|M94889.1|ECORFAH Escherichia coli RfaH (rfaH) gene, complete cds
          Length = 1321

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 377 gggtgatcatcggtgccagg 396
           ||||||||||||||||||||
Sbjct: 872 gggtgatcatcggtgccagg 853
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>gb|AC153903.5| Mus musculus 6 BAC RP23-20C5 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 210370

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 493   caagctgaaaacagtttcttcatgttct 520
             ||||||||||| |||||| |||||||||
Sbjct: 70797 caagctgaaaagagtttcctcatgttct 70770
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>emb|X65013.1|ECHLYT E.coli DNA sequence of hlyT (rfaH, sfrB) locus and ORF
          Length = 3591

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 377  gggtgatcatcggtgccagg 396
            ||||||||||||||||||||
Sbjct: 2073 gggtgatcatcggtgccagg 2054
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>gb|M87049.1|ECOUW85 E. coli genomic sequence of the region from 84.5 to 86.5 minutes
          Length = 91414

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 377   gggtgatcatcggtgccagg 396
             ||||||||||||||||||||
Sbjct: 77786 gggtgatcatcggtgccagg 77805
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>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome
          Length = 5528445

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 377     gggtgatcatcggtgccagg 396
               ||||||||||||||||||||
Sbjct: 4889792 gggtgatcatcggtgccagg 4889811
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>gb|BC006925.1| Mus musculus elongation factor RNA polymerase II 2, mRNA (cDNA clone
            IMAGE:3601737), complete cds
          Length = 2602

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 37   atacatacatacattgaaaa 56
            ||||||||||||||||||||
Sbjct: 1717 atacatacatacattgaaaa 1736
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>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome
          Length = 5498450

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 377     gggtgatcatcggtgccagg 396
               ||||||||||||||||||||
Sbjct: 4821028 gggtgatcatcggtgccagg 4821047
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>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome
          Length = 4369232

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 377     gggtgatcatcggtgccagg 396
               ||||||||||||||||||||
Sbjct: 3635555 gggtgatcatcggtgccagg 3635536
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>emb|AL732487.10| Mouse DNA sequence from clone RP23-188N15 on chromosome X, complete
             sequence
          Length = 173929

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    catgaatacatacatacatt 51
             ||||||||||||||||||||
Sbjct: 84853 catgaatacatacatacatt 84872
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>gb|CP000036.1| Shigella boydii Sb227, complete genome
          Length = 4519823

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 377     gggtgatcatcggtgccagg 396
               ||||||||||||||||||||
Sbjct: 3878155 gggtgatcatcggtgccagg 3878174
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>gb|J02722.1|RATHOXA Rat heme oxygenase gene, complete cds
          Length = 8377

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 32  catgaatacatacatacatt 51
           ||||||||||||||||||||
Sbjct: 270 catgaatacatacatacatt 289
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>emb|AJ429398.1|HSA429398 Homo sapiens CKAP2 gene for cytoskeleton associated protein 2, exons
             1-9
          Length = 21909

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                 
Query: 90    acacacttatataagtactatgtatacactgtatat 125
             |||||| ||||||  || ||||||||||||||||||
Sbjct: 11244 acacacatatatatataatatgtatacactgtatat 11279
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>gb|CP000038.1| Shigella sonnei Ss046, complete genome
          Length = 4825265

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 377     gggtgatcatcggtgccagg 396
               ||||||||||||||||||||
Sbjct: 4242163 gggtgatcatcggtgccagg 4242182


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,011,533
Number of Sequences: 3902068
Number of extensions: 5011533
Number of successful extensions: 288131
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 287781
Number of HSP's gapped (non-prelim): 346
length of query: 525
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 502
effective length of database: 17,143,297,704
effective search space: 8605935447408
effective search space used: 8605935447408
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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