ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart30h10 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 226 bits (114), Expect = 5e-56 Identities = 243/286 (84%) Strand = Plus / Plus Query: 159 agggcagaagggcgtgccgggcttctccctgtggctggggattacgaagtgcctgatccg 218 ||||||||| ||||||||| ||| || | |||||||||||| |||||| | | ||| || Sbjct: 5454826 agggcagaacggcgtgccgtccttgtcgcggtggctggggatgacgaagcggcggatgcg 5454885 Query: 219 gccgacctgctcggcgaggtacgcgtcgcaaaggaacgccttggagaacctgtcctccac 278 || ||||||||| ||||||| ||||||| ||||||||||||||||| ||||||| || Sbjct: 5454886 ccccacctgctcgacgaggtagccgtcgcagaggaacgccttggagaaggtgtcctcgac 5454945 Query: 279 cgtccggtccacgtcgtgcacgaacacgtcggtggcgccgtctccgggccgccgcgcgcg 338 ||||| |||||||| |||||||| ||||||||||| | |||||| || ||||| Sbjct: 5454946 gtggcggtcgacgtcgtggacgaacacctcggtggcgcccgccccgggcgtcctggcgcg 5455005 Query: 339 cgccaccatgccggcggtgtagatggcgcccatcctcccgggcgcctccggcgtccaccc 398 |||| ||||||| ||||||||||| || ||||||||||| |||| ||||||||||||||| Sbjct: 5455006 cgccgccatgcccgcggtgtagatcgcccccatcctccccggcgactccggcgtccaccc 5455065 Query: 399 cgtgggcgcgtccaccatgaccaggtcccactccacctcgtggaac 444 ||| |||||||||||||||| |||||||||||||||||||||||| Sbjct: 5455066 cgtcggcgcgtccaccatgatgaggtcccactccacctcgtggaac 5455111
>dbj|AK069867.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038F14, full insert sequence Length = 1521 Score = 226 bits (114), Expect = 5e-56 Identities = 243/286 (84%) Strand = Plus / Minus Query: 159 agggcagaagggcgtgccgggcttctccctgtggctggggattacgaagtgcctgatccg 218 ||||||||| ||||||||| ||| || | |||||||||||| |||||| | | ||| || Sbjct: 1003 agggcagaacggcgtgccgtccttgtcgcggtggctggggatgacgaagcggcggatgcg 944 Query: 219 gccgacctgctcggcgaggtacgcgtcgcaaaggaacgccttggagaacctgtcctccac 278 || ||||||||| ||||||| ||||||| ||||||||||||||||| ||||||| || Sbjct: 943 ccccacctgctcgacgaggtagccgtcgcagaggaacgccttggagaaggtgtcctcgac 884 Query: 279 cgtccggtccacgtcgtgcacgaacacgtcggtggcgccgtctccgggccgccgcgcgcg 338 ||||| |||||||| |||||||| ||||||||||| | |||||| || ||||| Sbjct: 883 gtggcggtcgacgtcgtggacgaacacctcggtggcgcccgccccgggcgtcctggcgcg 824 Query: 339 cgccaccatgccggcggtgtagatggcgcccatcctcccgggcgcctccggcgtccaccc 398 |||| ||||||| ||||||||||| || ||||||||||| |||| ||||||||||||||| Sbjct: 823 cgccgccatgcccgcggtgtagatcgcccccatcctccccggcgactccggcgtccaccc 764 Query: 399 cgtgggcgcgtccaccatgaccaggtcccactccacctcgtggaac 444 ||| |||||||||||||||| |||||||||||||||||||||||| Sbjct: 763 cgtcggcgcgtccaccatgatgaggtcccactccacctcgtggaac 718
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 226 bits (114), Expect = 5e-56 Identities = 243/286 (84%) Strand = Plus / Plus Query: 159 agggcagaagggcgtgccgggcttctccctgtggctggggattacgaagtgcctgatccg 218 ||||||||| ||||||||| ||| || | |||||||||||| |||||| | | ||| || Sbjct: 5454815 agggcagaacggcgtgccgtccttgtcgcggtggctggggatgacgaagcggcggatgcg 5454874 Query: 219 gccgacctgctcggcgaggtacgcgtcgcaaaggaacgccttggagaacctgtcctccac 278 || ||||||||| ||||||| ||||||| ||||||||||||||||| ||||||| || Sbjct: 5454875 ccccacctgctcgacgaggtagccgtcgcagaggaacgccttggagaaggtgtcctcgac 5454934 Query: 279 cgtccggtccacgtcgtgcacgaacacgtcggtggcgccgtctccgggccgccgcgcgcg 338 ||||| |||||||| |||||||| ||||||||||| | |||||| || ||||| Sbjct: 5454935 gtggcggtcgacgtcgtggacgaacacctcggtggcgcccgccccgggcgtcctggcgcg 5454994 Query: 339 cgccaccatgccggcggtgtagatggcgcccatcctcccgggcgcctccggcgtccaccc 398 |||| ||||||| ||||||||||| || ||||||||||| |||| ||||||||||||||| Sbjct: 5454995 cgccgccatgcccgcggtgtagatcgcccccatcctccccggcgactccggcgtccaccc 5455054 Query: 399 cgtgggcgcgtccaccatgaccaggtcccactccacctcgtggaac 444 ||| |||||||||||||||| |||||||||||||||||||||||| Sbjct: 5455055 cgtcggcgcgtccaccatgatgaggtcccactccacctcgtggaac 5455100
>emb|BX664711.2|CNS09SC1 Oryza sativa chromosome 12, . BAC B1001E08 of chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 141841 Score = 226 bits (114), Expect = 5e-56 Identities = 243/286 (84%) Strand = Plus / Minus Query: 159 agggcagaagggcgtgccgggcttctccctgtggctggggattacgaagtgcctgatccg 218 ||||||||| ||||||||| ||| || | |||||||||||| |||||| | | ||| || Sbjct: 10982 agggcagaacggcgtgccgtccttgtcgcggtggctggggatgacgaagcggcggatgcg 10923 Query: 219 gccgacctgctcggcgaggtacgcgtcgcaaaggaacgccttggagaacctgtcctccac 278 || ||||||||| ||||||| ||||||| ||||||||||||||||| ||||||| || Sbjct: 10922 ccccacctgctcgacgaggtagccgtcgcagaggaacgccttggagaaggtgtcctcgac 10863 Query: 279 cgtccggtccacgtcgtgcacgaacacgtcggtggcgccgtctccgggccgccgcgcgcg 338 ||||| |||||||| |||||||| ||||||||||| | |||||| || ||||| Sbjct: 10862 gtggcggtcgacgtcgtggacgaacacctcggtggcgcccgccccgggcgtcctggcgcg 10803 Query: 339 cgccaccatgccggcggtgtagatggcgcccatcctcccgggcgcctccggcgtccaccc 398 |||| ||||||| ||||||||||| || ||||||||||| |||| ||||||||||||||| Sbjct: 10802 cgccgccatgcccgcggtgtagatcgcccccatcctccccggcgactccggcgtccaccc 10743 Query: 399 cgtgggcgcgtccaccatgaccaggtcccactccacctcgtggaac 444 ||| |||||||||||||||| |||||||||||||||||||||||| Sbjct: 10742 cgtcggcgcgtccaccatgatgaggtcccactccacctcgtggaac 10697
>emb|BX649218.2|CNS09SBX Oryza sativa chromosome 12, . BAC B1280F04 of chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 160556 Score = 226 bits (114), Expect = 5e-56 Identities = 243/286 (84%) Strand = Plus / Plus Query: 159 agggcagaagggcgtgccgggcttctccctgtggctggggattacgaagtgcctgatccg 218 ||||||||| ||||||||| ||| || | |||||||||||| |||||| | | ||| || Sbjct: 7631 agggcagaacggcgtgccgtccttgtcgcggtggctggggatgacgaagcggcggatgcg 7690 Query: 219 gccgacctgctcggcgaggtacgcgtcgcaaaggaacgccttggagaacctgtcctccac 278 || ||||||||| ||||||| ||||||| ||||||||||||||||| ||||||| || Sbjct: 7691 ccccacctgctcgacgaggtagccgtcgcagaggaacgccttggagaaggtgtcctcgac 7750 Query: 279 cgtccggtccacgtcgtgcacgaacacgtcggtggcgccgtctccgggccgccgcgcgcg 338 ||||| |||||||| |||||||| ||||||||||| | |||||| || ||||| Sbjct: 7751 gtggcggtcgacgtcgtggacgaacacctcggtggcgcccgccccgggcgtcctggcgcg 7810 Query: 339 cgccaccatgccggcggtgtagatggcgcccatcctcccgggcgcctccggcgtccaccc 398 |||| ||||||| ||||||||||| || ||||||||||| |||| ||||||||||||||| Sbjct: 7811 cgccgccatgcccgcggtgtagatcgcccccatcctccccggcgactccggcgtccaccc 7870 Query: 399 cgtgggcgcgtccaccatgaccaggtcccactccacctcgtggaac 444 ||| |||||||||||||||| |||||||||||||||||||||||| Sbjct: 7871 cgtcggcgcgtccaccatgatgaggtcccactccacctcgtggaac 7916
>gb|AC135460.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0091I11, complete sequence Length = 135993 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 245 cgcaaaggaacgccttggagaacctgtcctccaccgtccggtccacgtcgtgcacgaaca 304 |||| ||||||||| | ||||||||||||| ||||| | ||||||||||||||| | || Sbjct: 29735 cgcacaggaacgccgtcgagaacctgtcctgcaccggcttgtccacgtcgtgcaccacca 29794 Query: 305 cgtc 308 |||| Sbjct: 29795 cgtc 29798
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 245 cgcaaaggaacgccttggagaacctgtcctccaccgtccggtccacgtcgtgcacgaaca 304 |||| ||||||||| | ||||||||||||| ||||| | ||||||||||||||| | || Sbjct: 7570649 cgcacaggaacgccgtcgagaacctgtcctgcaccggcttgtccacgtcgtgcaccacca 7570708 Query: 305 cgtc 308 |||| Sbjct: 7570709 cgtc 7570712 Score = 42.1 bits (21), Expect = 1.6 Identities = 42/49 (85%) Strand = Plus / Minus Query: 283 cggtccacgtcgtgcacgaacacgtcggtggcgccgtctccgggccgcc 331 ||||| |||||||| | ||||||||||||| |||| || ||| |||||| Sbjct: 16691336 cggtcgacgtcgtggaggaacacgtcggtgtcgccctcgccgcgccgcc 16691288
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 245 cgcaaaggaacgccttggagaacctgtcctccaccgtccggtccacgtcgtgcacgaaca 304 |||| ||||||||| | ||||||||||||| ||||| | ||||||||||||||| | || Sbjct: 7640736 cgcacaggaacgccgtcgagaacctgtcctgcaccggcttgtccacgtcgtgcaccacca 7640795 Query: 305 cgtc 308 |||| Sbjct: 7640796 cgtc 7640799 Score = 42.1 bits (21), Expect = 1.6 Identities = 42/49 (85%) Strand = Plus / Minus Query: 283 cggtccacgtcgtgcacgaacacgtcggtggcgccgtctccgggccgcc 331 ||||| |||||||| | ||||||||||||| |||| || ||| |||||| Sbjct: 16785159 cggtcgacgtcgtggaggaacacgtcggtgtcgccctcgccgcgccgcc 16785111
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 288 cacgtcgtgcacgaacacgtcg 309 |||||||||||||||||||||| Sbjct: 2472965 cacgtcgtgcacgaacacgtcg 2472986
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 288 cacgtcgtgcacgaacacgtcg 309 |||||||||||||||||||||| Sbjct: 1048865 cacgtcgtgcacgaacacgtcg 1048886
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 288 cacgtcgtgcacgaacacgtcg 309 |||||||||||||||||||||| Sbjct: 2706103 cacgtcgtgcacgaacacgtcg 2706124
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 288 cacgtcgtgcacgaacacgtcg 309 |||||||||||||||||||||| Sbjct: 147041 cacgtcgtgcacgaacacgtcg 147020
>gb|AF510029.1| Gleditsia microphylla clone 2 26S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 18S ribosomal RNA gene, partial sequence Length = 696 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Minus Query: 312 ggcgccgtctccgggccgccgcgcgcgcgc 341 ||||||||||||||||||||| | |||||| Sbjct: 238 ggcgccgtctccgggccgccgggagcgcgc 209
>gb|AF510028.1| Gleditsia microphylla clone 1 26S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 18S ribosomal RNA gene, partial sequence Length = 696 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Minus Query: 312 ggcgccgtctccgggccgccgcgcgcgcgc 341 ||||||||||||||||||||| | |||||| Sbjct: 238 ggcgccgtctccgggccgccgggagcgcgc 209
>gb|AF510027.1| Gleditsia microphylla 26S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 18S ribosomal RNA gene, partial sequence Length = 695 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Minus Query: 312 ggcgccgtctccgggccgccgcgcgcgcgc 341 ||||||||||||||||||||| | |||||| Sbjct: 238 ggcgccgtctccgggccgccgggagcgcgc 209
>gb|AF510026.1| Gleditsia fera clone 2 26S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 18S ribosomal RNA gene, partial sequence Length = 696 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Minus Query: 312 ggcgccgtctccgggccgccgcgcgcgcgc 341 ||||||||||||||||||||| | |||||| Sbjct: 238 ggcgccgtctccgggccgccgggagcgcgc 209
>gb|AF510025.1| Gleditsia fera clone 1 26S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 18S ribosomal RNA gene, partial sequence Length = 696 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Minus Query: 312 ggcgccgtctccgggccgccgcgcgcgcgc 341 ||||||||||||||||||||| | |||||| Sbjct: 238 ggcgccgtctccgggccgccgggagcgcgc 209
>gb|AF510024.1| Gleditsia australis clone 3 26S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 18S ribosomal RNA gene, partial sequence Length = 695 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Minus Query: 312 ggcgccgtctccgggccgccgcgcgcgcgc 341 ||||||||||||||||||||| | |||||| Sbjct: 237 ggcgccgtctccgggccgccgggagcgcgc 208
>gb|AF510023.1| Gleditsia australis clone 2 26S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 18S ribosomal RNA gene, partial sequence Length = 695 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Minus Query: 312 ggcgccgtctccgggccgccgcgcgcgcgc 341 ||||||||||||||||||||| | |||||| Sbjct: 237 ggcgccgtctccgggccgccgggagcgcgc 208
>gb|AF510022.1| Gleditsia australis clone 1 26S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 18S ribosomal RNA gene, partial sequence Length = 695 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Minus Query: 312 ggcgccgtctccgggccgccgcgcgcgcgc 341 ||||||||||||||||||||| | |||||| Sbjct: 237 ggcgccgtctccgggccgccgggagcgcgc 208
>gb|AF510021.1| Gleditsia australis 26S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 18S ribosomal RNA gene, partial sequence Length = 539 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Minus Query: 312 ggcgccgtctccgggccgccgcgcgcgcgc 341 ||||||||||||||||||||| | |||||| Sbjct: 128 ggcgccgtctccgggccgccgggagcgcgc 99
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Minus Query: 348 gccggcggtgtagatggcgcccatcctccc 377 ||||||||||||||||||| ||| |||||| Sbjct: 24736831 gccggcggtgtagatggcgaccaacctccc 24736802
>dbj|AK109232.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-156-F04, full insert sequence Length = 600 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Minus Query: 348 gccggcggtgtagatggcgcccatcctccc 377 ||||||||||||||||||| ||| |||||| Sbjct: 488 gccggcggtgtagatggcgtccaacctccc 459
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Minus Query: 221 cgacctgctcggcgaggtacgcgtcg 246 |||||||||||||||||| ||||||| Sbjct: 244625 cgacctgctcggcgaggtccgcgtcg 244600
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 288 cacgtcgtgcacgaacacgtcg 309 |||||||||||||||||||||| Sbjct: 766048 cacgtcgtgcacgaacacgtcg 766027
>emb|AL606629.3|OSJN00061 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0091E11, complete sequence Length = 133856 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Minus Query: 348 gccggcggtgtagatggcgcccatcctccc 377 ||||||||||||||||||| ||| |||||| Sbjct: 126354 gccggcggtgtagatggcgaccaacctccc 126325
>gb|AC109302.9| Mus musculus chromosome 3, clone RP24-331E17, complete sequence Length = 165229 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 74 ttcagtatatatatatgctgt 94 ||||||||||||||||||||| Sbjct: 76476 ttcagtatatatatatgctgt 76496
>gb|AC134400.4| Mus musculus chromosome 3, clone RP24-284D6, complete sequence Length = 190390 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 74 ttcagtatatatatatgctgt 94 ||||||||||||||||||||| Sbjct: 33252 ttcagtatatatatatgctgt 33232
>gb|AC136378.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0047D03, complete sequence Length = 126165 Score = 42.1 bits (21), Expect = 1.6 Identities = 42/49 (85%) Strand = Plus / Minus Query: 283 cggtccacgtcgtgcacgaacacgtcggtggcgccgtctccgggccgcc 331 ||||| |||||||| | ||||||||||||| |||| || ||| |||||| Sbjct: 72450 cggtcgacgtcgtggaggaacacgtcggtgtcgccctcgccgcgccgcc 72402
>gb|AC136787.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0052B22, complete sequence Length = 156725 Score = 42.1 bits (21), Expect = 1.6 Identities = 42/49 (85%) Strand = Plus / Minus Query: 283 cggtccacgtcgtgcacgaacacgtcggtggcgccgtctccgggccgcc 331 ||||| |||||||| | ||||||||||||| |||| || ||| |||||| Sbjct: 6951 cggtcgacgtcgtggaggaacacgtcggtgtcgccctcgccgcgccgcc 6903
>gb|AC161866.4| Mus musculus chromosome 3, clone RP24-145B15, complete sequence Length = 148729 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 74 ttcagtatatatatatgctgt 94 ||||||||||||||||||||| Sbjct: 102430 ttcagtatatatatatgctgt 102410
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 215 tccggccgacctgctcggcga 235 ||||||||||||||||||||| Sbjct: 1640582 tccggccgacctgctcggcga 1640602
>gb|AE005040.1| Halobacterium sp. NRC-1 section 71 of 170 of the complete genome Length = 10881 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 218 ggccgacctgctcggcgaggtacgc 242 |||||||||||| |||||||||||| Sbjct: 6394 ggccgacctgcttggcgaggtacgc 6418
>dbj|AK108872.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-152-C10, full insert sequence Length = 1378 Score = 42.1 bits (21), Expect = 1.6 Identities = 42/49 (85%) Strand = Plus / Minus Query: 283 cggtccacgtcgtgcacgaacacgtcggtggcgccgtctccgggccgcc 331 ||||| |||||||| | ||||||||||||| |||| || ||| |||||| Sbjct: 838 cggtcgacgtcgtggaggaacacgtcggtgtcgccctcgccgcgccgcc 790
>gb|AC118132.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0003A09, complete sequence Length = 167222 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 gcgccgtctccgggccgccg 332 |||||||||||||||||||| Sbjct: 75820 gcgccgtctccgggccgccg 75801
>ref|NM_192262.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 4488 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 258 cttggagaacctgtcctccaccgt 281 |||||||||||||||| ||||||| Sbjct: 3444 cttggagaacctgtccaccaccgt 3421
>ref|NM_174674.2| Bos taurus tumor necrosis factor receptor superfamily, member 1A (TNFRSF1A), mRNA Length = 2440 Score = 40.1 bits (20), Expect = 6.2 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Plus Query: 367 cccatcctcccgggcgcctccggcgtccaccc 398 |||||||||||||| ||||||||| ||||||| Sbjct: 1239 cccatcctcccggg-gcctccggcctccaccc 1269
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome Length = 943016 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 316 ccgtctccgggccgccgcgcgcgc 339 ||||| |||||||||||||||||| Sbjct: 906683 ccgtcgccgggccgccgcgcgcgc 906706
>gb|AC121364.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0052E20, complete sequence Length = 162434 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 cgaacacgtcggtggcgccg 318 |||||||||||||||||||| Sbjct: 24660 cgaacacgtcggtggcgccg 24641 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 cgaacacgtcggtggcgccg 318 |||||||||||||||||||| Sbjct: 17990 cgaacacgtcggtggcgccg 17971
>gb|AC112159.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1058_C01, complete sequence Length = 114236 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 cgaacacgtcggtggcgccg 318 |||||||||||||||||||| Sbjct: 112681 cgaacacgtcggtggcgccg 112662
>gb|AC112949.9| Mus musculus chromosome 17, clone RP23-294D3, complete sequence Length = 169739 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 ttcatcaagtgccacataac 34 |||||||||||||||||||| Sbjct: 139751 ttcatcaagtgccacataac 139770
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 326 gccgccgcgcgcgcgccacc 345 |||||||||||||||||||| Sbjct: 35223671 gccgccgcgcgcgcgccacc 35223690 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 gcgccgtctccgggccgccg 332 |||||||||||||||||||| Sbjct: 2038397 gcgccgtctccgggccgccg 2038378
>gb|AC092852.6| Oryza sativa chromosome 3 BAC OSJNBa0032G11 genomic sequence, complete sequence Length = 156606 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 326 gccgccgcgcgcgcgccacc 345 |||||||||||||||||||| Sbjct: 102432 gccgccgcgcgcgcgccacc 102451
>ref|XM_841423.1| Trypanosoma brucei TREU927 phospholipase A1 (Tb927.1.4830) partial mRNA Length = 903 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 ataacataattaattacctc 49 |||||||||||||||||||| Sbjct: 530 ataacataattaattacctc 511
>gb|AF434166.1| Oncorhynchus mykiss sodium bicarbonate cotransporter (NBC) mRNA, complete cds Length = 4050 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 cgtcggtggcgccgtctccg 324 |||||||||||||||||||| Sbjct: 293 cgtcggtggcgccgtctccg 274
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 gccgcgcgcgcgccaccatg 348 |||||||||||||||||||| Sbjct: 2267392 gccgcgcgcgcgccaccatg 2267411
>emb|BX914201.6| Zebrafish DNA sequence from clone DKEYP-108B3 in linkage group 21, complete sequence Length = 162420 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 cagtatatatatatgctgtg 95 |||||||||||||||||||| Sbjct: 142296 cagtatatatatatgctgtg 142315
>emb|Z98551.1|PFMAL3P6 Plasmodium falciparum MAL3P6, complete sequence Length = 164399 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 83 tatatatgctgtgtcttgaggtat 106 |||||||||||| ||||||||||| Sbjct: 98423 tatatatgctgtttcttgaggtat 98400
>emb|AJ851566.1| Gallus gallus mRNA for hypothetical protein, clone 7j8 Length = 5523 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 335 cgcgcgccaccatgccggcggtgt 358 |||||||||| ||||||||||||| Sbjct: 103 cgcgcgccacgatgccggcggtgt 126
>ref|NM_001012896.1| Gallus gallus adaptor-related protein complex 2, alpha 2 subunit (AP2A2), mRNA Length = 5523 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 335 cgcgcgccaccatgccggcggtgt 358 |||||||||| ||||||||||||| Sbjct: 103 cgcgcgccacgatgccggcggtgt 126
>emb|X02492.1|HSIFNIN3 Human interferon-inducible mRNA fragment (cDNA 6-16) Length = 777 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 ccgcgcgcgcgccaccatgc 349 |||||||||||||||||||| Sbjct: 54 ccgcgcgcgcgccaccatgc 73
>gb|BC113278.1| Bos taurus tumor necrosis factor receptor superfamily, member 1A, mRNA (cDNA clone MGC:138050 IMAGE:8082065), complete cds Length = 2253 Score = 40.1 bits (20), Expect = 6.2 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Plus Query: 367 cccatcctcccgggcgcctccggcgtccaccc 398 |||||||||||||| ||||||||| ||||||| Sbjct: 1055 cccatcctcccggg-gcctccggcctccaccc 1085
>emb|AJ716154.1| Trypanosoma brucei PLA1 gene for phospholipase A1, strain 427 Length = 903 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 ataacataattaattacctc 49 |||||||||||||||||||| Sbjct: 530 ataacataattaattacctc 511
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 327 ccgccgcgcgcgcgccaccatgccggcg 354 ||||||||||||||||||| ||||||| Sbjct: 894922 ccgccgcgcgcgcgccacccggccggcg 894895
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 cgaacacgtcggtggcgccg 318 |||||||||||||||||||| Sbjct: 22920647 cgaacacgtcggtggcgccg 22920628 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 cgaacacgtcggtggcgccg 318 |||||||||||||||||||| Sbjct: 22913977 cgaacacgtcggtggcgccg 22913958
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 326 gccgccgcgcgcgcgccacc 345 |||||||||||||||||||| Sbjct: 35313743 gccgccgcgcgcgcgccacc 35313762 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 gcgccgtctccgggccgccg 332 |||||||||||||||||||| Sbjct: 2038409 gcgccgtctccgggccgccg 2038390
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 258 cttggagaacctgtcctccaccgt 281 |||||||||||||||| ||||||| Sbjct: 25706881 cttggagaacctgtccaccaccgt 25706858
>gb|AC104650.2| Homo sapiens BAC clone RP11-117J13 from 4, complete sequence Length = 163948 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 334 gcgcgcgccaccatgccggc 353 |||||||||||||||||||| Sbjct: 156518 gcgcgcgccaccatgccggc 156537
>dbj|AB040742.1| Oryza sativa RRJ2 premature mRNA for pyruvate decarboxylase, partial cds Length = 2233 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 cgaacacgtcggtggcgccg 318 |||||||||||||||||||| Sbjct: 240 cgaacacgtcggtggcgccg 221
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 gggcgcgtccaccatgacca 421 |||||||||||||||||||| Sbjct: 6274677 gggcgcgtccaccatgacca 6274696 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 316 ccgtctccgggccgccgcgcgcgc 339 ||||| |||||||||||||||||| Sbjct: 1842025 ccgtccccgggccgccgcgcgcgc 1842048
>gb|AE004516.1| Pseudomonas aeruginosa PAO1, section 77 of 529 of the complete genome Length = 10476 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 425 cccactccacctcgtggaac 444 |||||||||||||||||||| Sbjct: 5718 cccactccacctcgtggaac 5737
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 cgggccgccgcgcgcgcgcc 342 |||||||||||||||||||| Sbjct: 2677639 cgggccgccgcgcgcgcgcc 2677620 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 332 gcgcgcgcgccaccatgccggcggtgta 359 |||||||||||| | ||||||||||||| Sbjct: 1211483 gcgcgcgcgccatcgtgccggcggtgta 1211456
>dbj|AP003607.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0004A09 Length = 158826 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 258 cttggagaacctgtcctccaccgt 281 |||||||||||||||| ||||||| Sbjct: 153687 cttggagaacctgtccaccaccgt 153664
>dbj|AP003855.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0039G05 Length = 138429 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 258 cttggagaacctgtcctccaccgt 281 |||||||||||||||| ||||||| Sbjct: 9345 cttggagaacctgtccaccaccgt 9322
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 cggccgacctgctcggcgag 236 |||||||||||||||||||| Sbjct: 4928739 cggccgacctgctcggcgag 4928758
>gb|U90937.1|BTU90937 Bos taurus tumor necrosis factor-receptor I (TNF-RI) mRNA, complete cds Length = 2440 Score = 40.1 bits (20), Expect = 6.2 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Plus Query: 367 cccatcctcccgggcgcctccggcgtccaccc 398 |||||||||||||| ||||||||| ||||||| Sbjct: 1239 cccatcctcccggg-gcctccggcctccaccc 1269
>dbj|AK101272.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033033A07, full insert sequence Length = 2203 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 cgaacacgtcggtggcgccg 318 |||||||||||||||||||| Sbjct: 307 cgaacacgtcggtggcgccg 288
>dbj|AK100678.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023113E15, full insert sequence Length = 2224 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 cgaacacgtcggtggcgccg 318 |||||||||||||||||||| Sbjct: 328 cgaacacgtcggtggcgccg 309
>dbj|AK100501.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099J05, full insert sequence Length = 3062 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 cgaacacgtcggtggcgccg 318 |||||||||||||||||||| Sbjct: 1045 cgaacacgtcggtggcgccg 1026
>emb|AL391153.3|CNS06C7Z Human chromosome 14 DNA sequence BAC C-2576L4 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 172336 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 334 gcgcgcgccaccatgccggc 353 |||||||||||||||||||| Sbjct: 78241 gcgcgcgccaccatgccggc 78222
>gb|U15756.1|TBU15756 Trypanosoma brucei cDNA clone SL-1A-3 Length = 515 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 ataacataattaattacctc 49 |||||||||||||||||||| Sbjct: 384 ataacataattaattacctc 403
>dbj|AK065303.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002N24, full insert sequence Length = 1979 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 gcgccgtctccgggccgccg 332 |||||||||||||||||||| Sbjct: 752 gcgccgtctccgggccgccg 733
>emb|CT025726.15| Mouse DNA sequence from clone RP23-299H17 on chromosome 17, complete sequence Length = 127014 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 ttcatcaagtgccacataac 34 |||||||||||||||||||| Sbjct: 83183 ttcatcaagtgccacataac 83164
>gb|AC004168.2|AC004168 Homo sapiens chromosome 4 clone B159L21 map 4q25, complete sequence Length = 185566 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 334 gcgcgcgccaccatgccggc 353 |||||||||||||||||||| Sbjct: 7388 gcgcgcgccaccatgccggc 7369
>gb|U26660.1|OSU26660 Oryza sativa pyruvate decarboxylase (Pdc1) gene, complete cds Length = 4233 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 cgaacacgtcggtggcgccg 318 |||||||||||||||||||| Sbjct: 1510 cgaacacgtcggtggcgccg 1491
>gb|U07339.1|OSU07339 Oryza sativa pyruvate decarboxylase 1 (pdc1) mRNA, complete cds Length = 2128 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 cgaacacgtcggtggcgccg 318 |||||||||||||||||||| Sbjct: 295 cgaacacgtcggtggcgccg 276 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,844,027 Number of Sequences: 3902068 Number of extensions: 12844027 Number of successful extensions: 95526 Number of sequences better than 10.0: 76 Number of HSP's better than 10.0 without gapping: 78 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 92571 Number of HSP's gapped (non-prelim): 2948 length of query: 461 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 439 effective length of database: 17,147,199,772 effective search space: 7527620699908 effective search space used: 7527620699908 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
