ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart30h07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK060161.1| Oryza sativa (japonica cultivar-group) cDNA clon... 276 6e-71
2ref|XM_466313.1| Oryza sativa (japonica cultivar-group), mRNA 270 4e-69
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 186 4e-44
4dbj|AP006068.3| Oryza sativa (japonica cultivar-group) genomic D... 186 4e-44
5dbj|AP006069.3| Oryza sativa (japonica cultivar-group) genomic D... 186 4e-44
6gb|AY109533.1| Zea mays CL775_1 mRNA sequence 115 1e-22
7dbj|AK069926.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 1e-16
8dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
9emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4,... 82 2e-12
10gb|AY104980.1| Zea mays PCO111857 mRNA sequence 76 1e-10
11dbj|AP004926.1| Lotus japonicus genomic DNA, chromosome 4, clone... 62 2e-06
12dbj|AP004625.1| Lotus japonicus genomic DNA, chromosome 5, clone... 62 2e-06
13emb|AJ292768.1|NPL292768 Nicotiana plumbaginifolia partial mRNA ... 60 7e-06
14gb|AF029351.1|AF029351 Nicotiana tabacum putative RNA binding pr... 60 7e-06
15gb|DQ284479.1| Solanum tuberosum clone 150D12 DNA binding protei... 54 4e-04
16dbj|AK122097.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.026
17gb|U90212.1|NTU90212 Nicotiana tabacum DNA binding protein ACBF ... 48 0.026
18gb|AE017197.1| Rickettsia typhi str. Wilmington complete genome 40 6.3
19gb|AY506544.1| Lycopersicon esculentum DNA-binding protein mRNA,... 40 6.3
20gb|AC109280.9| Mus musculus chromosome 18, clone RP23-400B7, com... 40 6.3
21gb|AC154125.7| Mus musculus chromosome 18, clone RP23-121M18, co... 40 6.3
22gb|AC012322.8| Homo sapiens chromosome 16 clone RP11-562N11, com... 40 6.3
23gb|AC067751.7| Homo sapiens chromosome 10 clone RP11-357K14, com... 40 6.3
24gb|AC009109.9| Homo sapiens chromosome 16 clone RP11-467L24, com... 40 6.3
25gb|AC136603.3| Homo sapiens chromosome 16 clone RP11-133M8, comp... 40 6.3
26gb|AF179633.1|AF179633 Homo sapiens chromosome 16 map 16q23.3-q2... 40 6.3
27gb|AC147446.3| Gallus gallus BAC clone CH261-7A22 from chromosom... 40 6.3
28gb|AC152058.8| Mus musculus BAC clone RP24-327D15 from chromosom... 40 6.3
29dbj|AP000350.1| Homo sapiens genomic DNA, chromosome 22q11.2, cl... 40 6.3 
>dbj|AK060161.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-H10, full
           insert sequence
          Length = 1037

 Score =  276 bits (139), Expect = 6e-71
 Identities = 202/223 (90%)
 Strand = Plus / Minus

                                                                       
Query: 245 tcatcagctcactagttgctggttaccgtagaaagggtaggctccataagccgcagcata 304
           |||||| ||||| || ||||||||||||||| |||||||||||||||| || || |||||
Sbjct: 783 tcatcaactcacaagctgctggttaccgtagtaagggtaggctccatatgctgctgcata 724

                                                                       
Query: 305 cacgtttgggtgtggaactggcgacgcatagccatatccaccgtagaaaggcatgccata 364
           || |||||||||||||| |||||||||||||||||||||||||||||||||  | || ||
Sbjct: 723 catgtttgggtgtggaagtggcgacgcatagccatatccaccgtagaaaggtgtaccgta 664

                                                                       
Query: 365 gtacatgccattccgtcgatggccagaatcacccctagactgtttgcttgctggactgcg 424
           |||||||||||| || || ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 663 gtacatgccattgcgccggtggccggaatcacccctagactgtttgcttgctggactgcg 604

                                                      
Query: 425 gccccaagaaagacgaacagcctgcttcccaattgttgatcca 467
           |||||| |||||||| || |||||||| |||||||||||||||
Sbjct: 603 gccccaggaaagacgcactgcctgctttccaattgttgatcca 561



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 56/65 (86%), Gaps = 1/65 (1%)
 Strand = Plus / Minus

                                                                       
Query: 147 tttatggccatctatag-tatgtcatcccatgatagtattcttactggaccaaaaccttg 205
           ||||||||||||||||  ||| ||||| || | || ||| |||||||||||||||||| |
Sbjct: 875 tttatggccatctataaatatctcatcacacgctactatgcttactggaccaaaacctcg 816

                
Query: 206 ttttc 210
           |||||
Sbjct: 815 ttttc 811



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 9    agttttattagcaagtcaaaatttctt 35
            |||||||||||| ||||||||||||||
Sbjct: 1017 agttttattagcgagtcaaaatttctt 991
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>ref|XM_466313.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1191

 Score =  270 bits (136), Expect = 4e-69
 Identities = 196/216 (90%)
 Strand = Plus / Minus

                                                                        
Query: 252  ctcactagttgctggttaccgtagaaagggtaggctccataagccgcagcatacacgttt 311
            ||||| || ||||||||||||||| |||||||||||||||| || || ||||||| ||||
Sbjct: 1187 ctcacaagctgctggttaccgtagtaagggtaggctccatatgctgctgcatacatgttt 1128

                                                                        
Query: 312  gggtgtggaactggcgacgcatagccatatccaccgtagaaaggcatgccatagtacatg 371
            |||||||||| |||||||||||||||||||||||||||||||||  | || |||||||||
Sbjct: 1127 gggtgtggaagtggcgacgcatagccatatccaccgtagaaaggtgtaccgtagtacatg 1068

                                                                        
Query: 372  ccattccgtcgatggccagaatcacccctagactgtttgcttgctggactgcggccccaa 431
            ||||| || || ||||| ||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 1067 ccattgcgccggtggccggaatcacccctagactgtttgcttgctggactgcggccccag 1008

                                                
Query: 432  gaaagacgaacagcctgcttcccaattgttgatcca 467
            |||||||| || |||||||| |||||||||||||||
Sbjct: 1007 gaaagacgcactgcctgctttccaattgttgatcca 972
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  186 bits (94), Expect = 4e-44
 Identities = 145/162 (89%)
 Strand = Plus / Minus

                                                                            
Query: 245      tcatcagctcactagttgctggttaccgtagaaagggtaggctccataagccgcagcata 304
                |||||| ||||| || ||||||||||||||| |||||||||||||||| || || |||||
Sbjct: 21621515 tcatcaactcacaagctgctggttaccgtagtaagggtaggctccatatgctgctgcata 21621456

                                                                            
Query: 305      cacgtttgggtgtggaactggcgacgcatagccatatccaccgtagaaaggcatgccata 364
                || |||||||||||||| |||||||||||||||||||||||||||||||||  | || ||
Sbjct: 21621455 catgtttgggtgtggaagtggcgacgcatagccatatccaccgtagaaaggtgtaccgta 21621396

                                                          
Query: 365      gtacatgccattccgtcgatggccagaatcacccctagactg 406
                |||||||||||| || || ||||| |||||||||||||||||
Sbjct: 21621395 gtacatgccattgcgccggtggccggaatcacccctagactg 21621354



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 60/64 (93%)
 Strand = Plus / Minus

                                                                            
Query: 404      ctgtttgcttgctggactgcggccccaagaaagacgaacagcctgcttcccaattgttga 463
                ||||||||||||||||||||||||||| |||||||| || |||||||| |||||||||||
Sbjct: 21618661 ctgtttgcttgctggactgcggccccaggaaagacgcactgcctgctttccaattgttga 21618602

                    
Query: 464      tcca 467
                ||||
Sbjct: 21618601 tcca 21618598



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 56/65 (86%), Gaps = 1/65 (1%)
 Strand = Plus / Minus

                                                                            
Query: 147      tttatggccatctatag-tatgtcatcccatgatagtattcttactggaccaaaaccttg 205
                ||||||||||||||||  ||| ||||| || | || ||| |||||||||||||||||| |
Sbjct: 21621607 tttatggccatctataaatatctcatcacacgctactatgcttactggaccaaaacctcg 21621548

                     
Query: 206      ttttc 210
                |||||
Sbjct: 21621547 ttttc 21621543



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                           
Query: 9        agttttattagcaagtcaaaatttctt 35
                |||||||||||| ||||||||||||||
Sbjct: 21621749 agttttattagcgagtcaaaatttctt 21621723
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>dbj|AP006068.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0020D05
          Length = 158760

 Score =  186 bits (94), Expect = 4e-44
 Identities = 145/162 (89%)
 Strand = Plus / Minus

                                                                          
Query: 245    tcatcagctcactagttgctggttaccgtagaaagggtaggctccataagccgcagcata 304
              |||||| ||||| || ||||||||||||||| |||||||||||||||| || || |||||
Sbjct: 110465 tcatcaactcacaagctgctggttaccgtagtaagggtaggctccatatgctgctgcata 110406

                                                                          
Query: 305    cacgtttgggtgtggaactggcgacgcatagccatatccaccgtagaaaggcatgccata 364
              || |||||||||||||| |||||||||||||||||||||||||||||||||  | || ||
Sbjct: 110405 catgtttgggtgtggaagtggcgacgcatagccatatccaccgtagaaaggtgtaccgta 110346

                                                        
Query: 365    gtacatgccattccgtcgatggccagaatcacccctagactg 406
              |||||||||||| || || ||||| |||||||||||||||||
Sbjct: 110345 gtacatgccattgcgccggtggccggaatcacccctagactg 110304



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 60/64 (93%)
 Strand = Plus / Minus

                                                                          
Query: 404    ctgtttgcttgctggactgcggccccaagaaagacgaacagcctgcttcccaattgttga 463
              ||||||||||||||||||||||||||| |||||||| || |||||||| |||||||||||
Sbjct: 107611 ctgtttgcttgctggactgcggccccaggaaagacgcactgcctgctttccaattgttga 107552

                  
Query: 464    tcca 467
              ||||
Sbjct: 107551 tcca 107548



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 56/65 (86%), Gaps = 1/65 (1%)
 Strand = Plus / Minus

                                                                          
Query: 147    tttatggccatctatag-tatgtcatcccatgatagtattcttactggaccaaaaccttg 205
              ||||||||||||||||  ||| ||||| || | || ||| |||||||||||||||||| |
Sbjct: 110557 tttatggccatctataaatatctcatcacacgctactatgcttactggaccaaaacctcg 110498

                   
Query: 206    ttttc 210
              |||||
Sbjct: 110497 ttttc 110493



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 9      agttttattagcaagtcaaaatttctt 35
              |||||||||||| ||||||||||||||
Sbjct: 110699 agttttattagcgagtcaaaatttctt 110673
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>dbj|AP006069.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
            clone:P0025F02
          Length = 156545

 Score =  186 bits (94), Expect = 4e-44
 Identities = 145/162 (89%)
 Strand = Plus / Minus

                                                                        
Query: 245  tcatcagctcactagttgctggttaccgtagaaagggtaggctccataagccgcagcata 304
            |||||| ||||| || ||||||||||||||| |||||||||||||||| || || |||||
Sbjct: 2912 tcatcaactcacaagctgctggttaccgtagtaagggtaggctccatatgctgctgcata 2853

                                                                        
Query: 305  cacgtttgggtgtggaactggcgacgcatagccatatccaccgtagaaaggcatgccata 364
            || |||||||||||||| |||||||||||||||||||||||||||||||||  | || ||
Sbjct: 2852 catgtttgggtgtggaagtggcgacgcatagccatatccaccgtagaaaggtgtaccgta 2793

                                                      
Query: 365  gtacatgccattccgtcgatggccagaatcacccctagactg 406
            |||||||||||| || || ||||| |||||||||||||||||
Sbjct: 2792 gtacatgccattgcgccggtggccggaatcacccctagactg 2751



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 54/58 (93%)
 Strand = Plus / Minus

                                                                     
Query: 404 ctgtttgcttgctggactgcggccccaagaaagacgaacagcctgcttcccaattgtt 461
           ||||||||||||||||||||||||||| |||||||| || |||||||| |||||||||
Sbjct: 58  ctgtttgcttgctggactgcggccccaggaaagacgcactgcctgctttccaattgtt 1



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 56/65 (86%), Gaps = 1/65 (1%)
 Strand = Plus / Minus

                                                                        
Query: 147  tttatggccatctatag-tatgtcatcccatgatagtattcttactggaccaaaaccttg 205
            ||||||||||||||||  ||| ||||| || | || ||| |||||||||||||||||| |
Sbjct: 3004 tttatggccatctataaatatctcatcacacgctactatgcttactggaccaaaacctcg 2945

                 
Query: 206  ttttc 210
            |||||
Sbjct: 2944 ttttc 2940



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 9    agttttattagcaagtcaaaatttctt 35
            |||||||||||| ||||||||||||||
Sbjct: 3146 agttttattagcgagtcaaaatttctt 3120
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>gb|AY109533.1| Zea mays CL775_1 mRNA sequence
          Length = 1689

 Score =  115 bits (58), Expect = 1e-22
 Identities = 88/98 (89%)
 Strand = Plus / Minus

                                                                        
Query: 370  tgccattccgtcgatggccagaatcacccctagactgtttgcttgctggactgcggcccc 429
            ||||||| || || |||||||||||||||||||||||||| ||||| || ||||||||||
Sbjct: 1253 tgccattgcgccggtggccagaatcacccctagactgtttacttgcagggctgcggcccc 1194

                                                  
Query: 430  aagaaagacgaacagcctgcttcccaattgttgatcca 467
            | ||||| ||||| |||||||||||||| |||||||||
Sbjct: 1193 aggaaagtcgaactgcctgcttcccaatagttgatcca 1156



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 106/128 (82%)
 Strand = Plus / Minus

                                                                        
Query: 246  catcagctcactagttgctggttaccgtagaaagggtaggctccataagccgcagcatac 305
            |||||||||||||| |||||||| || ||| | ||||||||| | || ||||| || |||
Sbjct: 1389 catcagctcactagctgctggttcccatagtacgggtaggcttcgtaggccgcggcgtac 1330

                                                                        
Query: 306  acgtttgggtgtggaactggcgacgcatagccatatccaccgtagaaaggcatgccatag 365
            | ||||||||| ||||  || || || |||||||||||||||||||| ||  | || |||
Sbjct: 1329 atgtttgggtgcggaatcggggaggcgtagccatatccaccgtagaatggtgtcccgtag 1270

                    
Query: 366  tacatgcc 373
            ||||||||
Sbjct: 1269 tacatgcc 1262



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 81   tttaggttctactggcaacacaaatctgcag 111
            ||||||||||||| ||| |||||||||||||
Sbjct: 1576 tttaggttctactagcagcacaaatctgcag 1546
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>dbj|AK069926.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036B01, full
            insert sequence
          Length = 1632

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 168/208 (80%)
 Strand = Plus / Minus

                                                                        
Query: 250  agctcactagttgctggttaccgtagaaagggtaggctccataagccgcagcatacacgt 309
            |||||||||| |||||  | || |||| ||||||||||||||| || |||||||||| ||
Sbjct: 1356 agctcactagctgctgactgccatagacagggtaggctccatatgcagcagcatacatgt 1297

                                                                        
Query: 310  ttgggtgtggaactggcgacgcatagccatatccaccgtagaaaggcatgccatagtaca 369
            | ||||| || || || || ||||| || |||||||||||||| ||| | ||||||||||
Sbjct: 1296 tagggtgcgggacgggggaggcataaccgtatccaccgtagaatggcgtcccatagtaca 1237

                                                                        
Query: 370  tgccattccgtcgatggccagaatcacccctagactgtttgcttgctggactgcggcccc 429
            |    || | |||   |||||||||| ||||||||||| |   || ||| ||||||||||
Sbjct: 1236 tattgtttcttcggctgccagaatcagccctagactgtctatgtgatgggctgcggcccc 1177

                                        
Query: 430  aagaaagacgaacagcctgcttcccaat 457
            | ||||| ||||| |||||||| |||||
Sbjct: 1176 atgaaaggcgaactgcctgctttccaat 1149



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 12   tttattagcaagtcaaaatttctt 35
            ||||||||||||||||||||||||
Sbjct: 1596 tttattagcaagtcaaaatttctt 1573
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 101/121 (83%)
 Strand = Plus / Minus

                                                                            
Query: 250      agctcactagttgctggttaccgtagaaagggtaggctccataagccgcagcatacacgt 309
                |||||||||| |||||  | || |||| ||||||||||||||| || |||||||||| ||
Sbjct: 22393482 agctcactagctgctgactgccatagacagggtaggctccatatgcagcagcatacatgt 22393423

                                                                            
Query: 310      ttgggtgtggaactggcgacgcatagccatatccaccgtagaaaggcatgccatagtaca 369
                | ||||| || || || || ||||| || |||||||||||||| ||| | ||||||||||
Sbjct: 22393422 tagggtgcgggacgggggaggcataaccgtatccaccgtagaatggcgtcccatagtaca 22393363

                 
Query: 370      t 370
                |
Sbjct: 22393362 t 22393362



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                        
Query: 12       tttattagcaagtcaaaatttctt 35
                ||||||||||||||||||||||||
Sbjct: 22393722 tttattagcaagtcaaaatttctt 22393699



 Score = 44.1 bits (22), Expect = 0.41
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                      
Query: 420      ctgcggccccaagaaagacgaacagcctgcttcccaat 457
                ||||||||||| ||||| ||||| |||||||| |||||
Sbjct: 22392056 ctgcggccccatgaaaggcgaactgcctgctttccaat 22392019
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>emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064H22,
              complete sequence
          Length = 147214

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 101/121 (83%)
 Strand = Plus / Minus

                                                                          
Query: 250    agctcactagttgctggttaccgtagaaagggtaggctccataagccgcagcatacacgt 309
              |||||||||| |||||  | || |||| ||||||||||||||| || |||||||||| ||
Sbjct: 144388 agctcactagctgctgactgccatagacagggtaggctccatatgcagcagcatacatgt 144329

                                                                          
Query: 310    ttgggtgtggaactggcgacgcatagccatatccaccgtagaaaggcatgccatagtaca 369
              | ||||| || || || || ||||| || |||||||||||||| ||| | ||||||||||
Sbjct: 144328 tagggtgcgggacgggggaggcataaccgtatccaccgtagaatggcgtcccatagtaca 144269

               
Query: 370    t 370
              |
Sbjct: 144268 t 144268



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 12     tttattagcaagtcaaaatttctt 35
              ||||||||||||||||||||||||
Sbjct: 144628 tttattagcaagtcaaaatttctt 144605



 Score = 44.1 bits (22), Expect = 0.41
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                    
Query: 420    ctgcggccccaagaaagacgaacagcctgcttcccaat 457
              ||||||||||| ||||| ||||| |||||||| |||||
Sbjct: 142962 ctgcggccccatgaaaggcgaactgcctgctttccaat 142925
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>gb|AY104980.1| Zea mays PCO111857 mRNA sequence
          Length = 1651

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 101/122 (82%)
 Strand = Plus / Minus

                                                                        
Query: 250  agctcactagttgctggttaccgtagaaagggtaggctccataagccgcagcatacacgt 309
            |||||||||| |||||||| || || |  ||||| |  ||||| || ||||| |||| ||
Sbjct: 1332 agctcactagctgctggttgccatatagcgggtacgtgccatacgctgcagcgtacatgt 1273

                                                                        
Query: 310  ttgggtgtggaactggcgacgcatagccatatccaccgtagaaaggcatgccatagtaca 369
            |||||||||| || || || |||||||||||||| |||||||| ||  ||||||||||||
Sbjct: 1272 ttgggtgtggcaccggggaggcatagccatatccgccgtagaatggtgtgccatagtaca 1213

              
Query: 370  tg 371
            ||
Sbjct: 1212 tg 1211



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 12   tttattagcaagtcaaaatttctt 35
            ||||||| ||||||||||||||||
Sbjct: 1599 tttattaccaagtcaaaatttctt 1576
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>dbj|AP004926.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT13P22, TM0079c,
            complete sequence
          Length = 109022

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 40/43 (93%)
 Strand = Plus / Plus

                                                       
Query: 415  ctggactgcggccccaagaaagacgaacagcctgcttcccaat 457
            ||||||||||||||||||||||||| || | ||||||||||||
Sbjct: 7052 ctggactgcggccccaagaaagacgcactgtctgcttcccaat 7094
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>dbj|AP004625.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT14E05b, TM0089b,
             complete sequence
          Length = 126514

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Plus

                                                                
Query: 412   ttgctggactgcggccccaagaaagacgaacagcctgcttcccaattgttg 462
             |||||||| |||||||||||||||||||||| |  ||||| ||||||||||
Sbjct: 61096 ttgctggattgcggccccaagaaagacgaactgtttgctttccaattgttg 61146
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>emb|AJ292768.1|NPL292768 Nicotiana plumbaginifolia partial mRNA for RNA Binding Protein 47
            (rbp47 gene)
          Length = 1621

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                      
Query: 412  ttgctggactgcggccccaagaaagacgaacagcctgcttcccaattgttgatccact 469
            |||||||||| || ||||| ||||||||||| |||||||| |||||| ||| ||||||
Sbjct: 1232 ttgctggacttcgcccccaggaaagacgaactgcctgcttgccaattattgctccact 1175
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>gb|AF029351.1|AF029351 Nicotiana tabacum putative RNA binding protein (QRRBP-1) mRNA,
            partial cds
          Length = 1682

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                      
Query: 412  ttgctggactgcggccccaagaaagacgaacagcctgcttcccaattgttgatccact 469
            |||||||||| || ||||| ||||||||||| |||||||| |||||| ||| ||||||
Sbjct: 1272 ttgctggacttcgtccccaggaaagacgaactgcctgcttgccaattattgctccact 1215
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>gb|DQ284479.1| Solanum tuberosum clone 150D12 DNA binding protein ACBF-like mRNA,
            complete cds
          Length = 1562

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                           
Query: 412  ttgctggactgcggccccaagaaagacgaacagcctgcttcccaatt 458
            |||||||||| || ||||| ||||||||||| |||||||| ||||||
Sbjct: 1212 ttgctggacttcgcccccaggaaagacgaactgcctgctttccaatt 1166
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>dbj|AK122097.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125F07, full
           insert sequence
          Length = 239

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 12  tttattagcaagtcaaaatttctt 35
           ||||||||||||||||||||||||
Sbjct: 220 tttattagcaagtcaaaatttctt 197
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>gb|U90212.1|NTU90212 Nicotiana tabacum DNA binding protein ACBF mRNA, complete cds
          Length = 1556

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 426  ccccaagaaagacgaacagcctgcttcccaattgttgatccact 469
            ||||| ||||||||||| |||||||| |||||| ||| ||||||
Sbjct: 1133 ccccaggaaagacgaactgcctgcttgccaattattgctccact 1090
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>gb|AE017197.1| Rickettsia typhi str. Wilmington complete genome
          Length = 1111496

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 106    ctgcagacatcacatacata 125
              ||||||||||||||||||||
Sbjct: 817446 ctgcagacatcacatacata 817465
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>gb|AY506544.1| Lycopersicon esculentum DNA-binding protein mRNA, complete cds
          Length = 1503

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 403  actgtttgcttgctggactgcggccccaagaaagacgaac 442
            |||| ||| |||||||| |||| ||||| |||||||||||
Sbjct: 1166 actgcttgtttgctggattgcgaccccaggaaagacgaac 1127
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>gb|AC109280.9| Mus musculus chromosome 18, clone RP23-400B7, complete sequence
          Length = 213683

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 112  acatcacatacatatacctgtctctctc 139
            ||||| ||||||||||||| ||||||||
Sbjct: 6658 acatctcatacatatacctctctctctc 6631
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>gb|AC154125.7| Mus musculus chromosome 18, clone RP23-121M18, complete sequence
          Length = 207258

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 112    acatcacatacatatacctgtctctctc 139
              ||||| ||||||||||||| ||||||||
Sbjct: 147894 acatctcatacatatacctctctctctc 147867
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>gb|AC012322.8| Homo sapiens chromosome 16 clone RP11-562N11, complete sequence
          Length = 186151

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 5      caatagttttattagcaagt 24
              ||||||||||||||||||||
Sbjct: 166695 caatagttttattagcaagt 166676
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>gb|AC067751.7| Homo sapiens chromosome 10 clone RP11-357K14, complete sequence
          Length = 180882

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 93     tggcaacacaaatctgcaga 112
              ||||||||||||||||||||
Sbjct: 122639 tggcaacacaaatctgcaga 122620
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>gb|AC009109.9| Homo sapiens chromosome 16 clone RP11-467L24, complete sequence
          Length = 150086

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     caatagttttattagcaagt 24
             ||||||||||||||||||||
Sbjct: 86680 caatagttttattagcaagt 86661
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>gb|AC136603.3| Homo sapiens chromosome 16 clone RP11-133M8, complete sequence
          Length = 183708

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 213   ctggtgttgggaggaaacag 232
             ||||||||||||||||||||
Sbjct: 26986 ctggtgttgggaggaaacag 26967
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>gb|AF179633.1|AF179633 Homo sapiens chromosome 16 map 16q23.3-q24.1 sequence
          Length = 96371

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 213   ctggtgttgggaggaaacag 232
             ||||||||||||||||||||
Sbjct: 33827 ctggtgttgggaggaaacag 33808
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>gb|AC147446.3| Gallus gallus BAC clone CH261-7A22 from chromosome unknown, complete
             sequence
          Length = 182128

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 439   gaacagcctgcttcccaatt 458
             ||||||||||||||||||||
Sbjct: 72534 gaacagcctgcttcccaatt 72553
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>gb|AC152058.8| Mus musculus BAC clone RP24-327D15 from chromosome 10, complete
             sequence
          Length = 204754

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   cagacatcacatacatatac 128
             ||||||||||||||||||||
Sbjct: 77875 cagacatcacatacatatac 77894
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>dbj|AP000350.1| Homo sapiens genomic DNA, chromosome 22q11.2, clone KB1125A3
          Length = 162328

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 204    tgttttctactggtgttggg 223
              ||||||||||||||||||||
Sbjct: 137685 tgttttctactggtgttggg 137666


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,776,608
Number of Sequences: 3902068
Number of extensions: 3776608
Number of successful extensions: 61423
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61293
Number of HSP's gapped (non-prelim): 125
length of query: 470
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 448
effective length of database: 17,147,199,772
effective search space: 7681945497856
effective search space used: 7681945497856
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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